RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 NISCHQ9Y2I1 1504 aa46.2■■■■■ 4.99
CLN3-205ENST00000359984 CCDC180Q9P1Z9 1646 aa40.49■■■■■ 4.07
CLN3-205ENST00000359984 ABCC9O60706 1549 aa38.76■■■■□ 3.79
CLN3-205ENST00000359984 ZCCHC6Q5VYS8 1495 aaKnown RBP38.71■■■■□ 3.79
CLN3-205ENST00000359984 DCAF8L2P0C7V8 631 aa38.31■■■■□ 3.72
CLN3-205ENST00000359984 DCAF1Q9Y4B6 1507 aa38.2■■■■□ 3.71
CLN3-205ENST00000359984 MYO15BQ96JP2 1530 aa37.95■■■■□ 3.67
CLN3-205ENST00000359984 NACADO15069 1562 aa37.86■■■■□ 3.65
CLN3-205ENST00000359984 RB1CC1Q8TDY2 1594 aa37.64■■■■□ 3.62
CLN3-205ENST00000359984 SHROOM4Q9ULL8 1493 aa37.31■■■■□ 3.56
CLN3-205ENST00000359984 SCRIBQ14160 1630 aa37.16■■■■□ 3.54
CLN3-205ENST00000359984 UNC13AQ9UPW8 1703 aa36.82■■■■□ 3.48
CLN3-205ENST00000359984 BICRAQ9NZM4 1560 aa36.52■■■■□ 3.44
CLN3-205ENST00000359984 PABPN1Q86U42 306 aaKnown RBP eCLIP36.47■■■■□ 3.43
CLN3-205ENST00000359984 CECR2Q9BXF3 1484 aa35.94■■■■□ 3.34
CLN3-205ENST00000359984 BAZ1AQ9NRL2 1556 aaPredicted RBP35.7■■■■□ 3.31
CLN3-205ENST00000359984 MROH2BQ7Z745 1585 aa35.67■■■■□ 3.3
CLN3-205ENST00000359984 RSF1Q96T23 1441 aaPredicted RBP35.66■■■■□ 3.3
CLN3-205ENST00000359984 SUPT5HO00267 1087 aaKnown RBP35.66■■■■□ 3.3
CLN3-205ENST00000359984 SMARCA4P51532 1647 aa35.6■■■■□ 3.29
CLN3-205ENST00000359984 EIF4G1Q04637 1599 aaKnown RBP35.46■■■■□ 3.27
CLN3-205ENST00000359984 WIZO95785 1651 aa35.33■■■■□ 3.25
CLN3-205ENST00000359984 PEG3Q9GZU2 1588 aa35.2■■■■□ 3.23
CLN3-205ENST00000359984 ATAD2BQ9ULI0 1458 aa35.17■■■■□ 3.22
CLN3-205ENST00000359984 SMARCA2P51531 1590 aa35.11■■■■□ 3.21
CLN3-205ENST00000359984 CC2D2AQ9P2K1 1620 aa35.05■■■■□ 3.2
CLN3-205ENST00000359984 TOP2AP11388 1531 aaKnown RBP34.97■■■■□ 3.19
CLN3-205ENST00000359984 NCAPD3P42695 1498 aa34.97■■■■□ 3.19
CLN3-205ENST00000359984 BAZ1BQ9UIG0 1483 aaKnown RBP34.92■■■■□ 3.18
CLN3-205ENST00000359984 HMGXB3Q12766 1538 aa34.84■■■■□ 3.17
CLN3-205ENST00000359984 DNAJC5BQ9UF47 199 aa34.68■■■■□ 3.14
CLN3-205ENST00000359984 CCDC88BA6NC98 1476 aa34.62■■■■□ 3.13
CLN3-205ENST00000359984 CFTRP13569 1480 aa34.04■■■■□ 3.04
CLN3-205ENST00000359984 CADPSQ9ULU8 1353 aa34.03■■■■□ 3.04
CLN3-205ENST00000359984 CHIC1Q5VXU3 224 aa33.9■■■■□ 3.02
CLN3-205ENST00000359984 NESP48681 1621 aa33.87■■■■□ 3.01
CLN3-205ENST00000359984 LAMC3Q9Y6N6 1575 aa33.82■■■■□ 3
CLN3-205ENST00000359984 PRDM2Q13029 1718 aa33.76■■■□□ 2.99
CLN3-205ENST00000359984 ABCC8Q09428 1581 aa33.69■■■□□ 2.98
CLN3-205ENST00000359984 FANCD2Q9BXW9 1451 aa33.63■■■□□ 2.97
CLN3-205ENST00000359984 PDS5BQ9NTI5 1447 aa33.6■■■□□ 2.97
CLN3-205ENST00000359984 TRIM41Q8WV44 630 aa33.58■■■□□ 2.97
CLN3-205ENST00000359984 WRNQ14191 1432 aaPredicted RBP eCLIP33.56■■■□□ 2.96
CLN3-205ENST00000359984 CEP164Q9UPV0 1460 aa33.46■■■□□ 2.95
CLN3-205ENST00000359984 SYNJ1O43426 1573 aa33.43■■■□□ 2.94
CLN3-205ENST00000359984 KIF21AQ7Z4S6 1674 aa33.42■■■□□ 2.94
CLN3-205ENST00000359984 CUX1P39880 1505 aa33.38■■■□□ 2.93
CLN3-205ENST00000359984 TOP2BQ02880 1626 aa33.34■■■□□ 2.93
CLN3-205ENST00000359984 BIVM-ERCC5R4GMW8 1640 aa33.3■■■□□ 2.92
CLN3-205ENST00000359984 ERCC6Q03468 1493 aa33.27■■■□□ 2.92
CLN3-205ENST00000359984 URB2Q14146 1524 aaKnown RBP33.25■■■□□ 2.91
CLN3-205ENST00000359984 DNMBPQ6XZF7 1577 aa33.23■■■□□ 2.91
CLN3-205ENST00000359984 TOPBP1Q92547 1522 aa33.22■■■□□ 2.91
CLN3-205ENST00000359984 MRC2Q9UBG0 1479 aa33.19■■■□□ 2.9
CLN3-205ENST00000359984 FGD5Q6ZNL6 1462 aa33.09■■■□□ 2.89
CLN3-205ENST00000359984 THOC2Q8NI27 1593 aaKnown RBP33.03■■■□□ 2.88
CLN3-205ENST00000359984 WDR62O43379 1518 aa33.03■■■□□ 2.88
CLN3-205ENST00000359984 POLA1P09884 1462 aaPredicted RBP33.01■■■□□ 2.88
CLN3-205ENST00000359984 SOGA1O94964 1423 aa32.99■■■□□ 2.87
CLN3-205ENST00000359984 FAM9AQ8IZU1 332 aaPredicted RBP32.94■■■□□ 2.86
CLN3-205ENST00000359984 RAD54L2Q9Y4B4 1467 aa32.9■■■□□ 2.86
CLN3-205ENST00000359984 RUSC2Q8N2Y8 1516 aa32.89■■■□□ 2.86
CLN3-205ENST00000359984 CUX2O14529 1486 aa32.82■■■□□ 2.84
CLN3-205ENST00000359984 EEA1Q15075 1411 aa32.82■■■□□ 2.84
CLN3-205ENST00000359984 ABCA10Q8WWZ4 1543 aa32.8■■■□□ 2.84
CLN3-205ENST00000359984 KIF27Q86VH2 1401 aa32.76■■■□□ 2.84
CLN3-205ENST00000359984 TARBP1Q13395 1621 aaKnown RBP32.75■■■□□ 2.83
CLN3-205ENST00000359984 CSRNP3Q8WYN3 585 aa32.71■■■□□ 2.83
CLN3-205ENST00000359984 IFT140Q96RY7 1462 aa32.71■■■□□ 2.83
CLN3-205ENST00000359984 WDR97A6NE52 1622 aa32.7■■■□□ 2.83
CLN3-205ENST00000359984 TDRD9Q8NDG6 1382 aaKnown RBP32.64■■■□□ 2.82
CLN3-205ENST00000359984 LOC105371045A0A1W2PR82 267 aa32.58■■■□□ 2.81
CLN3-205ENST00000359984 ABCA5Q8WWZ7 1642 aa32.55■■■□□ 2.8
CLN3-205ENST00000359984 IGF1RP08069 1367 aa32.55■■■□□ 2.8
CLN3-205ENST00000359984 ZNF608Q9ULD9 1512 aaPredicted RBP32.54■■■□□ 2.8
CLN3-205ENST00000359984 GAPVD1Q14C86 1478 aa32.53■■■□□ 2.8
CLN3-205ENST00000359984 AQRO60306 1485 aaKnown RBP eCLIP32.51■■■□□ 2.86e-6■■■■□ 25.1
CLN3-205ENST00000359984 EHMT2Q96KQ7 1210 aa32.48■■■□□ 2.79
CLN3-205ENST00000359984 PRXQ9BXM0 1461 aa32.42■■■□□ 2.78
CLN3-205ENST00000359984 ERICH3Q5RHP9 1530 aa32.4■■■□□ 2.78
CLN3-205ENST00000359984 KIF21BO75037 1637 aa32.4■■■□□ 2.78
CLN3-205ENST00000359984 EIF4G3O43432 1585 aaKnown RBP32.4■■■□□ 2.78
CLN3-205ENST00000359984 CARMIL1Q5VZK9 1371 aa32.37■■■□□ 2.77
CLN3-205ENST00000359984 GRIN2BQ13224 1484 aa32.36■■■□□ 2.77
CLN3-205ENST00000359984 PBRM1Q86U86 1689 aa32.34■■■□□ 2.77
CLN3-205ENST00000359984 RAPGEF2Q9Y4G8 1499 aa32.33■■■□□ 2.77
CLN3-205ENST00000359984 GOLGA3Q08378 1498 aa32.33■■■□□ 2.77
CLN3-205ENST00000359984 CUL7Q14999 1698 aa32.29■■■□□ 2.76
CLN3-205ENST00000359984 UBTFP17480 764 aaKnown RBP32.23■■■□□ 2.75
CLN3-205ENST00000359984 SNAPC4Q5SXM2 1469 aa32.19■■■□□ 2.74
CLN3-205ENST00000359984 FHAD1B1AJZ9 1412 aa32.19■■■□□ 2.74
CLN3-205ENST00000359984 ADAMTS12P58397 1594 aa32.17■■■□□ 2.74
CLN3-205ENST00000359984 TNIKQ9UKE5 1360 aa32.15■■■□□ 2.74
CLN3-205ENST00000359984 MAGI1Q96QZ7 1491 aaPredicted RBP32.13■■■□□ 2.73
CLN3-205ENST00000359984 SYNJ2O15056 1496 aa32.02■■■□□ 2.72
CLN3-205ENST00000359984 CHMP7Q8WUX9 453 aaPredicted RBP31.97■■■□□ 2.71
CLN3-205ENST00000359984 GRIN2AQ12879 1464 aa31.96■■■□□ 2.71
CLN3-205ENST00000359984 FBLN2P98095 1184 aa31.93■■■□□ 2.7
CLN3-205ENST00000359984 CEP162Q5TB80 1403 aa31.93■■■□□ 2.7
CLN3-205ENST00000359984 RANGAP1P46060 587 aaPredicted RBP31.84■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms