RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 NISCHQ9Y2I1 1504 aa34.2■■■■□ 3.07
CLN3-251ENST00000636853 CCDC180Q9P1Z9 1646 aa29.47■■■□□ 2.31
CLN3-251ENST00000636853 ZCCHC6Q5VYS8 1495 aaKnown RBP28.81■■■□□ 2.2
CLN3-251ENST00000636853 SHROOM4Q9ULL8 1493 aa28.53■■■□□ 2.16
CLN3-251ENST00000636853 DCAF8L2P0C7V8 631 aa28.39■■■□□ 2.13
CLN3-251ENST00000636853 DCAF1Q9Y4B6 1507 aa28.13■■■□□ 2.09
CLN3-251ENST00000636853 ABCC9O60706 1549 aa27.71■■■□□ 2.03
CLN3-251ENST00000636853 SUPT5HO00267 1087 aaKnown RBP27.67■■■□□ 2.02
CLN3-251ENST00000636853 MYO15BQ96JP2 1530 aa27.58■■■□□ 2
CLN3-251ENST00000636853 SCRIBQ14160 1630 aa27.4■■□□□ 1.98
CLN3-251ENST00000636853 NACADO15069 1562 aa27.37■■□□□ 1.97
CLN3-251ENST00000636853 RB1CC1Q8TDY2 1594 aa27.05■■□□□ 1.92
CLN3-251ENST00000636853 RSF1Q96T23 1441 aaPredicted RBP26.77■■□□□ 1.88
CLN3-251ENST00000636853 CECR2Q9BXF3 1484 aa26.66■■□□□ 1.86
CLN3-251ENST00000636853 CHIC1Q5VXU3 224 aa26.64■■□□□ 1.85
CLN3-251ENST00000636853 UNC13AQ9UPW8 1703 aa26.63■■□□□ 1.85
CLN3-251ENST00000636853 MROH2BQ7Z745 1585 aa26.52■■□□□ 1.84
CLN3-251ENST00000636853 WIZO95785 1651 aa26.36■■□□□ 1.81
CLN3-251ENST00000636853 BAZ1AQ9NRL2 1556 aaPredicted RBP26.33■■□□□ 1.81
CLN3-251ENST00000636853 PABPN1Q86U42 306 aaKnown RBP eCLIP26.31■■□□□ 1.8
CLN3-251ENST00000636853 BICRAQ9NZM4 1560 aa26.3■■□□□ 1.8
CLN3-251ENST00000636853 SMARCA4P51532 1647 aa26.19■■□□□ 1.78
CLN3-251ENST00000636853 TOP2AP11388 1531 aaKnown RBP25.97■■□□□ 1.75
CLN3-251ENST00000636853 TRIM41Q8WV44 630 aa25.88■■□□□ 1.73
CLN3-251ENST00000636853 CCDC88BA6NC98 1476 aa25.8■■□□□ 1.72
CLN3-251ENST00000636853 SMARCA2P51531 1590 aa25.79■■□□□ 1.72
CLN3-251ENST00000636853 LOC105371045A0A1W2PR82 267 aa25.77■■□□□ 1.72
CLN3-251ENST00000636853 PEG3Q9GZU2 1588 aa25.76■■□□□ 1.71
CLN3-251ENST00000636853 EIF4G1Q04637 1599 aaKnown RBP25.74■■□□□ 1.71
CLN3-251ENST00000636853 ATAD2BQ9ULI0 1458 aa25.66■■□□□ 1.7
CLN3-251ENST00000636853 FAM9AQ8IZU1 332 aaPredicted RBP25.57■■□□□ 1.68
CLN3-251ENST00000636853 BAZ1BQ9UIG0 1483 aaKnown RBP25.54■■□□□ 1.68
CLN3-251ENST00000636853 ABCC8Q09428 1581 aa25.49■■□□□ 1.67
CLN3-251ENST00000636853 EHMT2Q96KQ7 1210 aa25.32■■□□□ 1.64
CLN3-251ENST00000636853 NCAPD3P42695 1498 aa25.29■■□□□ 1.64
CLN3-251ENST00000636853 HMGXB3Q12766 1538 aa25.26■■□□□ 1.63
CLN3-251ENST00000636853 WRNQ14191 1432 aaPredicted RBP eCLIP25.17■■□□□ 1.62
CLN3-251ENST00000636853 SOGA1O94964 1423 aa25.11■■□□□ 1.61
CLN3-251ENST00000636853 PCGF6Q9BYE7 350 aa25.09■■□□□ 1.61
CLN3-251ENST00000636853 SYNJ1O43426 1573 aa25.08■■□□□ 1.61
CLN3-251ENST00000636853 RUSC2Q8N2Y8 1516 aa25.02■■□□□ 1.6
CLN3-251ENST00000636853 CC2D2AQ9P2K1 1620 aa25■■□□□ 1.59
CLN3-251ENST00000636853 EEA1Q15075 1411 aa24.95■■□□□ 1.58
CLN3-251ENST00000636853 CSRNP3Q8WYN3 585 aa24.93■■□□□ 1.58
CLN3-251ENST00000636853 CFTRP13569 1480 aa24.9■■□□□ 1.58
CLN3-251ENST00000636853 TOP2BQ02880 1626 aa24.86■■□□□ 1.57
CLN3-251ENST00000636853 TRIM26Q12899 539 aaPredicted RBP24.82■■□□□ 1.56
CLN3-251ENST00000636853 BIVM-ERCC5R4GMW8 1640 aa24.81■■□□□ 1.56
CLN3-251ENST00000636853 CUX1P39880 1505 aa24.75■■□□□ 1.55
CLN3-251ENST00000636853 PRDM2Q13029 1718 aa24.74■■□□□ 1.55
CLN3-251ENST00000636853 TNIKQ9UKE5 1360 aa24.74■■□□□ 1.55
CLN3-251ENST00000636853 CADPSQ9ULU8 1353 aa24.74■■□□□ 1.55
CLN3-251ENST00000636853 UBTFP17480 764 aaKnown RBP24.73■■□□□ 1.55
CLN3-251ENST00000636853 GOLGA3Q08378 1498 aa24.72■■□□□ 1.55
CLN3-251ENST00000636853 CEP162Q5TB80 1403 aa24.7■■□□□ 1.54
CLN3-251ENST00000636853 HRCP23327 699 aa24.66■■□□□ 1.54
CLN3-251ENST00000636853 CEP164Q9UPV0 1460 aa24.66■■□□□ 1.54
CLN3-251ENST00000636853 KIF21BO75037 1637 aa24.65■■□□□ 1.54
CLN3-251ENST00000636853 PPARGC1BQ86YN6 1023 aaKnown RBP24.61■■□□□ 1.53
CLN3-251ENST00000636853 RAPGEF2Q9Y4G8 1499 aa24.55■■□□□ 1.52
CLN3-251ENST00000636853 FANCD2Q9BXW9 1451 aa24.49■■□□□ 1.51
CLN3-251ENST00000636853 NESP48681 1621 aa24.49■■□□□ 1.51
CLN3-251ENST00000636853 KIF27Q86VH2 1401 aa24.47■■□□□ 1.51
CLN3-251ENST00000636853 DNAJC5BQ9UF47 199 aa24.45■■□□□ 1.5
CLN3-251ENST00000636853 PRXQ9BXM0 1461 aa24.42■■□□□ 1.5
CLN3-251ENST00000636853 FGD5Q6ZNL6 1462 aa24.4■■□□□ 1.5
CLN3-251ENST00000636853 CLIP1P30622 1438 aa24.39■■□□□ 1.49
CLN3-251ENST00000636853 ERICH3Q5RHP9 1530 aa24.37■■□□□ 1.49
CLN3-251ENST00000636853 CUX2O14529 1486 aa24.36■■□□□ 1.49
CLN3-251ENST00000636853 RANGAP1P46060 587 aaPredicted RBP24.35■■□□□ 1.49
CLN3-251ENST00000636853 LAMC3Q9Y6N6 1575 aa24.34■■□□□ 1.49
CLN3-251ENST00000636853 TTBK1Q5TCY1 1321 aaPredicted RBP24.34■■□□□ 1.49
CLN3-251ENST00000636853 DNMBPQ6XZF7 1577 aa24.3■■□□□ 1.48
CLN3-251ENST00000636853 TOPBP1Q92547 1522 aa24.27■■□□□ 1.48
CLN3-251ENST00000636853 IGF1RP08069 1367 aa24.25■■□□□ 1.47
CLN3-251ENST00000636853 VPS8Q8N3P4 1428 aa24.21■■□□□ 1.47
CLN3-251ENST00000636853 RAD54L2Q9Y4B4 1467 aa24.21■■□□□ 1.47
CLN3-251ENST00000636853 POLA1P09884 1462 aaPredicted RBP24.2■■□□□ 1.47
CLN3-251ENST00000636853 PDS5BQ9NTI5 1447 aa24.17■■□□□ 1.46
CLN3-251ENST00000636853 URB2Q14146 1524 aaKnown RBP24.17■■□□□ 1.46
CLN3-251ENST00000636853 CARMIL1Q5VZK9 1371 aa24.13■■□□□ 1.45
CLN3-251ENST00000636853 ABCA10Q8WWZ4 1543 aa24.13■■□□□ 1.45
CLN3-251ENST00000636853 KIF21AQ7Z4S6 1674 aa24.12■■□□□ 1.45
CLN3-251ENST00000636853 ARAP1Q96P48 1450 aa24.09■■□□□ 1.45
CLN3-251ENST00000636853 APLP2Q06481 763 aa24.04■■□□□ 1.44
CLN3-251ENST00000636853 ARHGAP35Q9NRY4 1499 aa24■■□□□ 1.43
CLN3-251ENST00000636853 ZEB1P37275 1124 aaPredicted RBP23.99■■□□□ 1.43
CLN3-251ENST00000636853 WDR97A6NE52 1622 aa23.99■■□□□ 1.43
CLN3-251ENST00000636853 TDRD9Q8NDG6 1382 aaKnown RBP23.94■■□□□ 1.42
CLN3-251ENST00000636853 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.93■■□□□ 1.42
CLN3-251ENST00000636853 CUL7Q14999 1698 aa23.91■■□□□ 1.42
CLN3-251ENST00000636853 ABCA5Q8WWZ7 1642 aa23.89■■□□□ 1.42
CLN3-251ENST00000636853 GAPVD1Q14C86 1478 aa23.87■■□□□ 1.41
CLN3-251ENST00000636853 TARBP1Q13395 1621 aaKnown RBP23.85■■□□□ 1.41
CLN3-251ENST00000636853 MRC2Q9UBG0 1479 aa23.84■■□□□ 1.41
CLN3-251ENST00000636853 CCER1Q8TC90 406 aaPredicted RBP23.84■■□□□ 1.41
CLN3-251ENST00000636853 KANK4Q5T7N3 995 aaPredicted RBP23.82■■□□□ 1.4
CLN3-251ENST00000636853 HNRNPUL2Q1KMD3 747 aaKnown RBP23.77■■□□□ 1.4
CLN3-251ENST00000636853 P3H3Q8IVL6 736 aa23.77■■□□□ 1.4
CLN3-251ENST00000636853 CTTNBP2Q8WZ74 1663 aa23.76■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms