RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 NISCHQ9Y2I1 1504 aa42.88■■■■■ 4.45
CLN3-204ENST00000357857 CCDC180Q9P1Z9 1646 aa37.57■■■■□ 3.61
CLN3-204ENST00000357857 ZCCHC6Q5VYS8 1495 aaKnown RBP35.98■■■■□ 3.35
CLN3-204ENST00000357857 ABCC9O60706 1549 aa35.63■■■■□ 3.29
CLN3-204ENST00000357857 DCAF1Q9Y4B6 1507 aa35.48■■■■□ 3.27
CLN3-204ENST00000357857 DCAF8L2P0C7V8 631 aa35.41■■■■□ 3.26
CLN3-204ENST00000357857 MYO15BQ96JP2 1530 aa35.14■■■■□ 3.22
CLN3-204ENST00000357857 NACADO15069 1562 aa35■■■■□ 3.19
CLN3-204ENST00000357857 RB1CC1Q8TDY2 1594 aa34.76■■■■□ 3.16
CLN3-204ENST00000357857 SHROOM4Q9ULL8 1493 aa34.76■■■■□ 3.16
CLN3-204ENST00000357857 SCRIBQ14160 1630 aa34.47■■■■□ 3.11
CLN3-204ENST00000357857 UNC13AQ9UPW8 1703 aa34.11■■■■□ 3.05
CLN3-204ENST00000357857 BICRAQ9NZM4 1560 aa33.7■■■□□ 2.99
CLN3-204ENST00000357857 PABPN1Q86U42 306 aaKnown RBP eCLIP33.52■■■□□ 2.96
CLN3-204ENST00000357857 SUPT5HO00267 1087 aaKnown RBP33.33■■■□□ 2.93
CLN3-204ENST00000357857 CECR2Q9BXF3 1484 aa33.31■■■□□ 2.92
CLN3-204ENST00000357857 RSF1Q96T23 1441 aaPredicted RBP33.15■■■□□ 2.9
CLN3-204ENST00000357857 BAZ1AQ9NRL2 1556 aaPredicted RBP33.14■■■□□ 2.9
CLN3-204ENST00000357857 MROH2BQ7Z745 1585 aa33.11■■■□□ 2.89
CLN3-204ENST00000357857 SMARCA4P51532 1647 aa33.04■■■□□ 2.88
CLN3-204ENST00000357857 WIZO95785 1651 aa32.86■■■□□ 2.85
CLN3-204ENST00000357857 EIF4G1Q04637 1599 aaKnown RBP32.7■■■□□ 2.83
CLN3-204ENST00000357857 PEG3Q9GZU2 1588 aa32.64■■■□□ 2.82
CLN3-204ENST00000357857 SMARCA2P51531 1590 aa32.53■■■□□ 2.8
CLN3-204ENST00000357857 ATAD2BQ9ULI0 1458 aa32.51■■■□□ 2.8
CLN3-204ENST00000357857 TOP2AP11388 1531 aaKnown RBP32.51■■■□□ 2.8
CLN3-204ENST00000357857 BAZ1BQ9UIG0 1483 aaKnown RBP32.33■■■□□ 2.77
CLN3-204ENST00000357857 CC2D2AQ9P2K1 1620 aa32.28■■■□□ 2.76
CLN3-204ENST00000357857 NCAPD3P42695 1498 aa32.27■■■□□ 2.76
CLN3-204ENST00000357857 HMGXB3Q12766 1538 aa32.25■■■□□ 2.75
CLN3-204ENST00000357857 CCDC88BA6NC98 1476 aa32.14■■■□□ 2.74
CLN3-204ENST00000357857 DNAJC5BQ9UF47 199 aa31.94■■■□□ 2.7
CLN3-204ENST00000357857 CHIC1Q5VXU3 224 aa31.8■■■□□ 2.68
CLN3-204ENST00000357857 CFTRP13569 1480 aa31.49■■■□□ 2.63
CLN3-204ENST00000357857 PRDM2Q13029 1718 aa31.45■■■□□ 2.62
CLN3-204ENST00000357857 CADPSQ9ULU8 1353 aa31.42■■■□□ 2.62
CLN3-204ENST00000357857 ABCC8Q09428 1581 aa31.4■■■□□ 2.62
CLN3-204ENST00000357857 TRIM41Q8WV44 630 aa31.37■■■□□ 2.61
CLN3-204ENST00000357857 LAMC3Q9Y6N6 1575 aa31.25■■■□□ 2.59
CLN3-204ENST00000357857 WRNQ14191 1432 aaPredicted RBP eCLIP31.22■■■□□ 2.59
CLN3-204ENST00000357857 NESP48681 1621 aa31.21■■■□□ 2.59
CLN3-204ENST00000357857 SYNJ1O43426 1573 aa31.13■■■□□ 2.57
CLN3-204ENST00000357857 FANCD2Q9BXW9 1451 aa31.08■■■□□ 2.57
CLN3-204ENST00000357857 TOP2BQ02880 1626 aa31.03■■■□□ 2.56
CLN3-204ENST00000357857 BIVM-ERCC5R4GMW8 1640 aa31.03■■■□□ 2.56
CLN3-204ENST00000357857 CUX1P39880 1505 aa30.98■■■□□ 2.55
CLN3-204ENST00000357857 PDS5BQ9NTI5 1447 aa30.98■■■□□ 2.55
CLN3-204ENST00000357857 CEP164Q9UPV0 1460 aa30.93■■■□□ 2.54
CLN3-204ENST00000357857 KIF21AQ7Z4S6 1674 aa30.91■■■□□ 2.54
CLN3-204ENST00000357857 DNMBPQ6XZF7 1577 aa30.8■■■□□ 2.52
CLN3-204ENST00000357857 FAM9AQ8IZU1 332 aaPredicted RBP30.77■■■□□ 2.52
CLN3-204ENST00000357857 SOGA1O94964 1423 aa30.74■■■□□ 2.51
CLN3-204ENST00000357857 TOPBP1Q92547 1522 aa30.74■■■□□ 2.51
CLN3-204ENST00000357857 URB2Q14146 1524 aaKnown RBP30.71■■■□□ 2.51
CLN3-204ENST00000357857 EEA1Q15075 1411 aa30.68■■■□□ 2.5
CLN3-204ENST00000357857 FGD5Q6ZNL6 1462 aa30.67■■■□□ 2.5
CLN3-204ENST00000357857 RUSC2Q8N2Y8 1516 aa30.64■■■□□ 2.5
CLN3-204ENST00000357857 MRC2Q9UBG0 1479 aa30.61■■■□□ 2.49
CLN3-204ENST00000357857 ERCC6Q03468 1493 aa30.6■■■□□ 2.49
CLN3-204ENST00000357857 POLA1P09884 1462 aaPredicted RBP30.56■■■□□ 2.48
CLN3-204ENST00000357857 LOC105371045A0A1W2PR82 267 aa30.55■■■□□ 2.48
CLN3-204ENST00000357857 CSRNP3Q8WYN3 585 aa30.49■■■□□ 2.47
CLN3-204ENST00000357857 WDR62O43379 1518 aa30.47■■■□□ 2.47
CLN3-204ENST00000357857 KIF27Q86VH2 1401 aa30.46■■■□□ 2.47
CLN3-204ENST00000357857 THOC2Q8NI27 1593 aaKnown RBP30.44■■■□□ 2.46
CLN3-204ENST00000357857 RAD54L2Q9Y4B4 1467 aa30.44■■■□□ 2.46
CLN3-204ENST00000357857 CUX2O14529 1486 aa30.43■■■□□ 2.46
CLN3-204ENST00000357857 ABCA10Q8WWZ4 1543 aa30.41■■■□□ 2.46
CLN3-204ENST00000357857 WDR97A6NE52 1622 aa30.38■■■□□ 2.45
CLN3-204ENST00000357857 EHMT2Q96KQ7 1210 aa30.32■■■□□ 2.44
CLN3-204ENST00000357857 KIF21BO75037 1637 aa30.32■■■□□ 2.44
CLN3-204ENST00000357857 TARBP1Q13395 1621 aaKnown RBP30.31■■■□□ 2.44
CLN3-204ENST00000357857 GOLGA3Q08378 1498 aa30.25■■■□□ 2.43
CLN3-204ENST00000357857 ABCA5Q8WWZ7 1642 aa30.2■■■□□ 2.43
CLN3-204ENST00000357857 IFT140Q96RY7 1462 aa30.2■■■□□ 2.43
CLN3-204ENST00000357857 PRXQ9BXM0 1461 aa30.19■■■□□ 2.42
CLN3-204ENST00000357857 IGF1RP08069 1367 aa30.18■■■□□ 2.42
CLN3-204ENST00000357857 ERICH3Q5RHP9 1530 aa30.15■■■□□ 2.42
CLN3-204ENST00000357857 TDRD9Q8NDG6 1382 aaKnown RBP30.14■■■□□ 2.42
CLN3-204ENST00000357857 RAPGEF2Q9Y4G8 1499 aa30.14■■■□□ 2.42
CLN3-204ENST00000357857 GAPVD1Q14C86 1478 aa30.12■■■□□ 2.41
CLN3-204ENST00000357857 UBTFP17480 764 aaKnown RBP30.08■■■□□ 2.41
CLN3-204ENST00000357857 TNIKQ9UKE5 1360 aa30.08■■■□□ 2.41
CLN3-204ENST00000357857 CUL7Q14999 1698 aa30.06■■■□□ 2.4
CLN3-204ENST00000357857 PBRM1Q86U86 1689 aa30.04■■■□□ 2.4
CLN3-204ENST00000357857 CARMIL1Q5VZK9 1371 aa30.04■■■□□ 2.4
CLN3-204ENST00000357857 ZNF608Q9ULD9 1512 aaPredicted RBP30.01■■■□□ 2.4
CLN3-204ENST00000357857 AQRO60306 1485 aaKnown RBP eCLIP30■■■□□ 2.396e-6■■■■□ 25.1
CLN3-204ENST00000357857 EIF4G3O43432 1585 aaKnown RBP29.96■■■□□ 2.39
CLN3-204ENST00000357857 GRIN2BQ13224 1484 aa29.93■■■□□ 2.38
CLN3-204ENST00000357857 CEP162Q5TB80 1403 aa29.91■■■□□ 2.38
CLN3-204ENST00000357857 ADAMTS12P58397 1594 aa29.83■■■□□ 2.37
CLN3-204ENST00000357857 FHAD1B1AJZ9 1412 aa29.79■■■□□ 2.36
CLN3-204ENST00000357857 SNAPC4Q5SXM2 1469 aa29.75■■■□□ 2.35
CLN3-204ENST00000357857 CLIP1P30622 1438 aa29.73■■■□□ 2.35
CLN3-204ENST00000357857 CTTNBP2Q8WZ74 1663 aa29.72■■■□□ 2.35
CLN3-204ENST00000357857 MAGI1Q96QZ7 1491 aaPredicted RBP29.71■■■□□ 2.35
CLN3-204ENST00000357857 RANGAP1P46060 587 aaPredicted RBP29.62■■■□□ 2.33
CLN3-204ENST00000357857 SYNJ2O15056 1496 aa29.59■■■□□ 2.33
CLN3-204ENST00000357857 GRIN2AQ12879 1464 aa29.56■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms