RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 NISCHQ9Y2I1 1504 aa19.64■□□□□ 0.74
CLN3-244ENST00000636147 SUPT5HO00267 1087 aaKnown RBP18.71■□□□□ 0.59
CLN3-244ENST00000636147 SHROOM4Q9ULL8 1493 aa18.57■□□□□ 0.56
CLN3-244ENST00000636147 DCAF8L2P0C7V8 631 aa18.39■□□□□ 0.53
CLN3-244ENST00000636147 PCGF6Q9BYE7 350 aa18.23■□□□□ 0.51
CLN3-244ENST00000636147 HRCP23327 699 aa17.97■□□□□ 0.47
CLN3-244ENST00000636147 PPARGC1BQ86YN6 1023 aaKnown RBP17.88■□□□□ 0.45
CLN3-244ENST00000636147 EHMT2Q96KQ7 1210 aa17.77■□□□□ 0.44
CLN3-244ENST00000636147 CHIC1Q5VXU3 224 aa17.6■□□□□ 0.41
CLN3-244ENST00000636147 LOC105371045A0A1W2PR82 267 aa17.53■□□□□ 0.4
CLN3-244ENST00000636147 FAM9AQ8IZU1 332 aaPredicted RBP17.5■□□□□ 0.39
CLN3-244ENST00000636147 PELP1Q8IZL8 1130 aaKnown RBP17.43■□□□□ 0.38
CLN3-244ENST00000636147 TRIM26Q12899 539 aaPredicted RBP17.34■□□□□ 0.37
CLN3-244ENST00000636147 ZEB1P37275 1124 aaPredicted RBP17.28■□□□□ 0.36
CLN3-244ENST00000636147 TTBK1Q5TCY1 1321 aaPredicted RBP17.25■□□□□ 0.35
CLN3-244ENST00000636147 TRIM41Q8WV44 630 aa17.14■□□□□ 0.33
CLN3-244ENST00000636147 CCER1Q8TC90 406 aaPredicted RBP17.12■□□□□ 0.33
CLN3-244ENST00000636147 MYO15BQ96JP2 1530 aa17.09■□□□□ 0.33
CLN3-244ENST00000636147 CENPBP07199 599 aaPredicted RBP17.06■□□□□ 0.32
CLN3-244ENST00000636147 YTHDC1Q96MU7 727 aaKnown RBP16.99■□□□□ 0.31
CLN3-244ENST00000636147 SCAF1Q9H7N4 1312 aaKnown RBP16.9■□□□□ 0.3
CLN3-244ENST00000636147 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.9■□□□□ 0.3
CLN3-244ENST00000636147 GTF3C3Q9Y5Q9 886 aa16.82■□□□□ 0.28
CLN3-244ENST00000636147 MYT1Q01538 1121 aa16.77■□□□□ 0.28
CLN3-244ENST00000636147 DIEXFQ68CQ4 756 aaKnown RBP16.75■□□□□ 0.27
CLN3-244ENST00000636147 DCAF1Q9Y4B6 1507 aa16.74■□□□□ 0.27
CLN3-244ENST00000636147 ACIN1Q9UKV3 1341 aaKnown RBP16.71■□□□□ 0.27
CLN3-244ENST00000636147 NEUROD1Q13562 356 aa16.67■□□□□ 0.26
CLN3-244ENST00000636147 RANGAP1P46060 587 aaPredicted RBP16.61■□□□□ 0.25
CLN3-244ENST00000636147 UBTFP17480 764 aaKnown RBP16.56■□□□□ 0.24
CLN3-244ENST00000636147 APLP2Q06481 763 aa16.54■□□□□ 0.24
CLN3-244ENST00000636147 ZCCHC6Q5VYS8 1495 aaKnown RBP16.51■□□□□ 0.23
CLN3-244ENST00000636147 HNRNPUL2Q1KMD3 747 aaKnown RBP16.48■□□□□ 0.23
CLN3-244ENST00000636147 ZNF316A6NFI3 1004 aaPredicted RBP16.33■□□□□ 0.2
CLN3-244ENST00000636147 CCDC180Q9P1Z9 1646 aa16.32■□□□□ 0.2
CLN3-244ENST00000636147 MIER1Q8N108 512 aa16.17■□□□□ 0.18
CLN3-244ENST00000636147 BCANQ96GW7 911 aa16.17■□□□□ 0.18
CLN3-244ENST00000636147 ITGAEP38570 1179 aa16.14■□□□□ 0.17
CLN3-244ENST00000636147 NEFLP07196 543 aa16.11■□□□□ 0.17
CLN3-244ENST00000636147 ERICH6Q7L0X2 663 aa16.11■□□□□ 0.17
CLN3-244ENST00000636147 ABCC9O60706 1549 aa16.09■□□□□ 0.17
CLN3-244ENST00000636147 RSF1Q96T23 1441 aaPredicted RBP15.97■□□□□ 0.15
CLN3-244ENST00000636147 ATP1B4Q9UN42 357 aaPredicted RBP15.97■□□□□ 0.15
CLN3-244ENST00000636147 CSRNP3Q8WYN3 585 aa15.92■□□□□ 0.14
CLN3-244ENST00000636147 SCRIBQ14160 1630 aa15.89■□□□□ 0.13
CLN3-244ENST00000636147 FKBP8Q14318 412 aa15.82■□□□□ 0.12
CLN3-244ENST00000636147 SUPT16HQ9Y5B9 1047 aaKnown RBP15.76■□□□□ 0.11
CLN3-244ENST00000636147 CEP162Q5TB80 1403 aa15.76■□□□□ 0.11
CLN3-244ENST00000636147 RB1CC1Q8TDY2 1594 aa15.73■□□□□ 0.11
CLN3-244ENST00000636147 ANP32EQ9BTT0 268 aa15.72■□□□□ 0.11
CLN3-244ENST00000636147 CNGB1Q14028 1251 aaPredicted RBP15.72■□□□□ 0.11
CLN3-244ENST00000636147 DDX10Q13206 875 aaKnown RBP15.7■□□□□ 0.1
CLN3-244ENST00000636147 TRIM52Q96A61 297 aa15.68■□□□□ 0.1
CLN3-244ENST00000636147 CLSPNQ9HAW4 1339 aa15.66■□□□□ 0.1
CLN3-244ENST00000636147 FAM50AQ14320 339 aaKnown RBP15.65■□□□□ 0.1
CLN3-244ENST00000636147 HIRIP3Q9BW71 556 aaPredicted RBP15.63■□□□□ 0.09
CLN3-244ENST00000636147 PABPN1Q86U42 306 aaKnown RBP eCLIP15.62■□□□□ 0.09
CLN3-244ENST00000636147 CECR2Q9BXF3 1484 aa15.61■□□□□ 0.09
CLN3-244ENST00000636147 ANP32CO43423 234 aa15.61■□□□□ 0.09
CLN3-244ENST00000636147 BCL11AQ9H165 835 aa15.61■□□□□ 0.09
CLN3-244ENST00000636147 TSHZ2Q9NRE2 1034 aa15.59■□□□□ 0.09
CLN3-244ENST00000636147 CDK11AQ9UQ88 783 aaPredicted RBP15.58■□□□□ 0.08
CLN3-244ENST00000636147 SOGA1O94964 1423 aa15.56■□□□□ 0.08
CLN3-244ENST00000636147 IRX6P78412 446 aaPredicted RBP15.56■□□□□ 0.08
CLN3-244ENST00000636147 TNIKQ9UKE5 1360 aa15.56■□□□□ 0.08
CLN3-244ENST00000636147 POLR3GLQ9BT43 218 aa15.54■□□□□ 0.08
CLN3-244ENST00000636147 CLIP1P30622 1438 aa15.53■□□□□ 0.08
CLN3-244ENST00000636147 KCNH8Q96L42 1107 aa15.49■□□□□ 0.07
CLN3-244ENST00000636147 CCDC88BA6NC98 1476 aa15.47■□□□□ 0.07
CLN3-244ENST00000636147 HNRNPUQ00839 825 aaKnown RBP eCLIP15.47■□□□□ 0.07
CLN3-244ENST00000636147 ABCC8Q09428 1581 aa15.44■□□□□ 0.06
CLN3-244ENST00000636147 MROH2BQ7Z745 1585 aa15.43■□□□□ 0.06
CLN3-244ENST00000636147 P3H3Q8IVL6 736 aa15.43■□□□□ 0.06
CLN3-244ENST00000636147 GOLGA3Q08378 1498 aa15.43■□□□□ 0.06
CLN3-244ENST00000636147 RBM19Q9Y4C8 960 aaKnown RBP15.42■□□□□ 0.06
CLN3-244ENST00000636147 RTL5Q5HYW3 569 aaPredicted RBP15.41■□□□□ 0.06
CLN3-244ENST00000636147 NBR1Q14596 966 aa15.38■□□□□ 0.05
CLN3-244ENST00000636147 SIN3AQ96ST3 1273 aa15.37■□□□□ 0.05
CLN3-244ENST00000636147 WRNQ14191 1432 aaPredicted RBP eCLIP15.34■□□□□ 0.05
CLN3-244ENST00000636147 EEA1Q15075 1411 aa15.34■□□□□ 0.05
CLN3-244ENST00000636147 RUSC2Q8N2Y8 1516 aa15.33■□□□□ 0.04
CLN3-244ENST00000636147 FAM9BQ8IZU0 186 aa15.31■□□□□ 0.04
CLN3-244ENST00000636147 KANK4Q5T7N3 995 aaPredicted RBP15.31■□□□□ 0.04
CLN3-244ENST00000636147 WIZO95785 1651 aa15.28■□□□□ 0.04
CLN3-244ENST00000636147 TONSLQ96HA7 1378 aa15.25■□□□□ 0.03
CLN3-244ENST00000636147 SENP3-EIF4A1A0A087X0R7 540 aa15.25■□□□□ 0.03
CLN3-244ENST00000636147 CEP164Q9UPV0 1460 aa15.25■□□□□ 0.03
CLN3-244ENST00000636147 NPM2Q86SE8 214 aaKnown RBP15.25■□□□□ 0.03
CLN3-244ENST00000636147 VPS8Q8N3P4 1428 aa15.23■□□□□ 0.03
CLN3-244ENST00000636147 DHX57Q6P158 1386 aaKnown RBP15.21■□□□□ 0.03
CLN3-244ENST00000636147 ANP32AP39687 249 aaKnown RBP15.2■□□□□ 0.02
CLN3-244ENST00000636147 ZNF326Q5BKZ1 582 aaKnown RBP15.2■□□□□ 0.02
CLN3-244ENST00000636147 DAXXQ9UER7 740 aaPredicted RBP15.2■□□□□ 0.02
CLN3-244ENST00000636147 B4GALNT3Q6L9W6 998 aa15.17■□□□□ 0.02
CLN3-244ENST00000636147 PRKCSHP14314 528 aaPredicted RBP15.16■□□□□ 0.02
CLN3-244ENST00000636147 MRS2Q9HD23 443 aa15.15■□□□□ 0.02
CLN3-244ENST00000636147 CCNB3Q8WWL7 1395 aa15.14■□□□□ 0.01
CLN3-244ENST00000636147 DEKP35659 375 aaKnown RBP15.12■□□□□ 0.01
CLN3-244ENST00000636147 CCDC136Q96JN2 1154 aa15.12■□□□□ 0.01
CLN3-244ENST00000636147 BAZ1AQ9NRL2 1556 aaPredicted RBP15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms