RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 NISCHQ9Y2I1 1504 aa45.77■■■■■ 4.92
CLN3-227ENST00000567495 CCDC180Q9P1Z9 1646 aa40.75■■■■■ 4.11
CLN3-227ENST00000567495 ABCC9O60706 1549 aa40.2■■■■■ 4.03
CLN3-227ENST00000567495 RB1CC1Q8TDY2 1594 aa38.57■■■■□ 3.76
CLN3-227ENST00000567495 NACADO15069 1562 aa38.48■■■■□ 3.75
CLN3-227ENST00000567495 DCAF8L2P0C7V8 631 aa38.42■■■■□ 3.74
CLN3-227ENST00000567495 MYO15BQ96JP2 1530 aa38.21■■■■□ 3.71
CLN3-227ENST00000567495 ZCCHC6Q5VYS8 1495 aaKnown RBP38.04■■■■□ 3.68
CLN3-227ENST00000567495 DCAF1Q9Y4B6 1507 aa37.9■■■■□ 3.66
CLN3-227ENST00000567495 PABPN1Q86U42 306 aaKnown RBP eCLIP37.56■■■■□ 3.6
CLN3-227ENST00000567495 UNC13AQ9UPW8 1703 aa37.44■■■■□ 3.58
CLN3-227ENST00000567495 BICRAQ9NZM4 1560 aa37.32■■■■□ 3.56
CLN3-227ENST00000567495 DNAJC5BQ9UF47 199 aa37.2■■■■□ 3.55
CLN3-227ENST00000567495 SCRIBQ14160 1630 aa37.11■■■■□ 3.53
CLN3-227ENST00000567495 SHROOM4Q9ULL8 1493 aa37.09■■■■□ 3.53
CLN3-227ENST00000567495 EIF4G1Q04637 1599 aaKnown RBP36.4■■■■□ 3.42
CLN3-227ENST00000567495 CC2D2AQ9P2K1 1620 aa36.3■■■■□ 3.4
CLN3-227ENST00000567495 CECR2Q9BXF3 1484 aa36.2■■■■□ 3.39
CLN3-227ENST00000567495 NCAPD3P42695 1498 aa35.55■■■■□ 3.28
CLN3-227ENST00000567495 SMARCA4P51532 1647 aa35.5■■■■□ 3.27
CLN3-227ENST00000567495 BAZ1AQ9NRL2 1556 aaPredicted RBP35.5■■■■□ 3.27
CLN3-227ENST00000567495 ATAD2BQ9ULI0 1458 aa35.48■■■■□ 3.27
CLN3-227ENST00000567495 SMARCA2P51531 1590 aa35.43■■■■□ 3.26
CLN3-227ENST00000567495 HMGXB3Q12766 1538 aa35.28■■■■□ 3.24
CLN3-227ENST00000567495 MROH2BQ7Z745 1585 aa35.22■■■■□ 3.23
CLN3-227ENST00000567495 PEG3Q9GZU2 1588 aa35.22■■■■□ 3.23
CLN3-227ENST00000567495 BAZ1BQ9UIG0 1483 aaKnown RBP35.16■■■■□ 3.22
CLN3-227ENST00000567495 RSF1Q96T23 1441 aaPredicted RBP34.78■■■■□ 3.16
CLN3-227ENST00000567495 WIZO95785 1651 aa34.74■■■■□ 3.15
CLN3-227ENST00000567495 ERCC6Q03468 1493 aa34.73■■■■□ 3.15
CLN3-227ENST00000567495 NESP48681 1621 aa34.66■■■■□ 3.14
CLN3-227ENST00000567495 LAMC3Q9Y6N6 1575 aa34.58■■■■□ 3.13
CLN3-227ENST00000567495 CADPSQ9ULU8 1353 aa34.51■■■■□ 3.12
CLN3-227ENST00000567495 CUX2O14529 1486 aa34.49■■■■□ 3.11
CLN3-227ENST00000567495 PDS5BQ9NTI5 1447 aa34.47■■■■□ 3.11
CLN3-227ENST00000567495 TOP2AP11388 1531 aaKnown RBP34.46■■■■□ 3.11
CLN3-227ENST00000567495 CFTRP13569 1480 aa34.21■■■■□ 3.07
CLN3-227ENST00000567495 THOC2Q8NI27 1593 aaKnown RBP34.16■■■■□ 3.06
CLN3-227ENST00000567495 KIF21AQ7Z4S6 1674 aa34.13■■■■□ 3.05
CLN3-227ENST00000567495 CCDC88BA6NC98 1476 aa34.07■■■■□ 3.05
CLN3-227ENST00000567495 FANCD2Q9BXW9 1451 aa34.06■■■■□ 3.04
CLN3-227ENST00000567495 MRC2Q9UBG0 1479 aa34.06■■■■□ 3.04
CLN3-227ENST00000567495 CEP164Q9UPV0 1460 aa34.05■■■■□ 3.04
CLN3-227ENST00000567495 WDR62O43379 1518 aa33.92■■■■□ 3.02
CLN3-227ENST00000567495 DNAJC5Q9H3Z4 198 aa33.84■■■■□ 3.01
CLN3-227ENST00000567495 PRDM2Q13029 1718 aa33.69■■■□□ 2.98
CLN3-227ENST00000567495 URB2Q14146 1524 aaKnown RBP33.69■■■□□ 2.98
CLN3-227ENST00000567495 SUPT5HO00267 1087 aaKnown RBP33.68■■■□□ 2.98
CLN3-227ENST00000567495 ABCC8Q09428 1581 aa33.54■■■□□ 2.96
CLN3-227ENST00000567495 TOPBP1Q92547 1522 aa33.46■■■□□ 2.95
CLN3-227ENST00000567495 IFT140Q96RY7 1462 aa33.37■■■□□ 2.93
CLN3-227ENST00000567495 DNMBPQ6XZF7 1577 aa33.37■■■□□ 2.93
CLN3-227ENST00000567495 ZNF608Q9ULD9 1512 aaPredicted RBP33.17■■■□□ 2.9
CLN3-227ENST00000567495 POLA1P09884 1462 aaPredicted RBP33.16■■■□□ 2.9
CLN3-227ENST00000567495 OSCARQ8IYS5 282 aa33.09■■■□□ 2.89
CLN3-227ENST00000567495 SOGA1O94964 1423 aa33.07■■■□□ 2.88
CLN3-227ENST00000567495 CUX1P39880 1505 aa33.06■■■□□ 2.88
CLN3-227ENST00000567495 TARBP1Q13395 1621 aaKnown RBP33.05■■■□□ 2.88
CLN3-227ENST00000567495 FGD5Q6ZNL6 1462 aa33.02■■■□□ 2.88
CLN3-227ENST00000567495 AQRO60306 1485 aaKnown RBP eCLIP32.99■■■□□ 2.876e-6■■■■□ 25.1
CLN3-227ENST00000567495 RAD54L2Q9Y4B4 1467 aa32.99■■■□□ 2.87
CLN3-227ENST00000567495 EIF4G3O43432 1585 aaKnown RBP32.97■■■□□ 2.87
CLN3-227ENST00000567495 TDRD9Q8NDG6 1382 aaKnown RBP32.9■■■□□ 2.86
CLN3-227ENST00000567495 WDR97A6NE52 1622 aa32.86■■■□□ 2.85
CLN3-227ENST00000567495 WRNQ14191 1432 aaPredicted RBP eCLIP32.82■■■□□ 2.84
CLN3-227ENST00000567495 ABCA10Q8WWZ4 1543 aa32.72■■■□□ 2.83
CLN3-227ENST00000567495 GRIN2BQ13224 1484 aa32.72■■■□□ 2.83
CLN3-227ENST00000567495 FBLN2P98095 1184 aa32.71■■■□□ 2.83
CLN3-227ENST00000567495 TOP2BQ02880 1626 aa32.69■■■□□ 2.82
CLN3-227ENST00000567495 GAPVD1Q14C86 1478 aa32.67■■■□□ 2.82
CLN3-227ENST00000567495 MAGI1Q96QZ7 1491 aaPredicted RBP32.67■■■□□ 2.82
CLN3-227ENST00000567495 SNAPC4Q5SXM2 1469 aa32.65■■■□□ 2.82
CLN3-227ENST00000567495 BIVM-ERCC5R4GMW8 1640 aa32.64■■■□□ 2.82
CLN3-227ENST00000567495 CHMP7Q8WUX9 453 aaPredicted RBP32.62■■■□□ 2.81
CLN3-227ENST00000567495 SYNJ1O43426 1573 aa32.62■■■□□ 2.81
CLN3-227ENST00000567495 ABCA5Q8WWZ7 1642 aa32.53■■■□□ 2.8
CLN3-227ENST00000567495 TRIM41Q8WV44 630 aa32.53■■■□□ 2.8
CLN3-227ENST00000567495 CHD1O14646 1710 aa32.53■■■□□ 2.8
CLN3-227ENST00000567495 SYNJ2O15056 1496 aa32.53■■■□□ 2.8
CLN3-227ENST00000567495 PBRM1Q86U86 1689 aa32.42■■■□□ 2.78
CLN3-227ENST00000567495 ARHGEF11O15085 1522 aa32.41■■■□□ 2.78
CLN3-227ENST00000567495 RIMBP3CA6NJZ7 1639 aa32.37■■■□□ 2.77
CLN3-227ENST00000567495 RIMBP3BA6NNM3 1639 aa32.37■■■□□ 2.77
CLN3-227ENST00000567495 RIMBP3Q9UFD9 1639 aa32.37■■■□□ 2.77
CLN3-227ENST00000567495 ERICH3Q5RHP9 1530 aa32.33■■■□□ 2.77
CLN3-227ENST00000567495 FHAD1B1AJZ9 1412 aa32.31■■■□□ 2.76
CLN3-227ENST00000567495 CLASP1Q7Z460 1538 aa32.3■■■□□ 2.76
CLN3-227ENST00000567495 GRIN2AQ12879 1464 aa32.26■■■□□ 2.75
CLN3-227ENST00000567495 ADAMTS12P58397 1594 aa32.24■■■□□ 2.75
CLN3-227ENST00000567495 CYB5RLQ6IPT4 315 aa32.22■■■□□ 2.75
CLN3-227ENST00000567495 KIF27Q86VH2 1401 aa32.19■■■□□ 2.74
CLN3-227ENST00000567495 NUP160Q12769 1436 aa32.16■■■□□ 2.74
CLN3-227ENST00000567495 ARAP1Q96P48 1450 aa32.12■■■□□ 2.73
CLN3-227ENST00000567495 IGF1RP08069 1367 aa32.09■■■□□ 2.73
CLN3-227ENST00000567495 CEP170Q5SW79 1584 aa32.02■■■□□ 2.72
CLN3-227ENST00000567495 CUL7Q14999 1698 aa31.91■■■□□ 2.7
CLN3-227ENST00000567495 CARMIL1Q5VZK9 1371 aa31.9■■■□□ 2.7
CLN3-227ENST00000567495 JPH4Q96JJ6 628 aa31.89■■■□□ 2.7
CLN3-227ENST00000567495 SHROOM2Q13796 1616 aa31.85■■■□□ 2.69
CLN3-227ENST00000567495 PRG4Q92954 1404 aaPredicted RBP31.8■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms