RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 NISCHQ9Y2I1 1504 aa47.25■■■■■ 5.15
CLN3-225ENST00000566824 CCDC180Q9P1Z9 1646 aa41.86■■■■■ 4.29
CLN3-225ENST00000566824 ABCC9O60706 1549 aa40.81■■■■■ 4.12
CLN3-225ENST00000566824 ZCCHC6Q5VYS8 1495 aaKnown RBP39.4■■■■□ 3.9
CLN3-225ENST00000566824 DCAF8L2P0C7V8 631 aa39.38■■■■□ 3.89
CLN3-225ENST00000566824 NACADO15069 1562 aa39.26■■■■□ 3.88
CLN3-225ENST00000566824 RB1CC1Q8TDY2 1594 aa39.26■■■■□ 3.88
CLN3-225ENST00000566824 MYO15BQ96JP2 1530 aa39.06■■■■□ 3.84
CLN3-225ENST00000566824 DCAF1Q9Y4B6 1507 aa39.03■■■■□ 3.84
CLN3-225ENST00000566824 UNC13AQ9UPW8 1703 aa38.56■■■■□ 3.76
CLN3-225ENST00000566824 SCRIBQ14160 1630 aa38.31■■■■□ 3.72
CLN3-225ENST00000566824 PABPN1Q86U42 306 aaKnown RBP eCLIP38.2■■■■□ 3.71
CLN3-225ENST00000566824 BICRAQ9NZM4 1560 aa38.2■■■■□ 3.71
CLN3-225ENST00000566824 SHROOM4Q9ULL8 1493 aa37.58■■■■□ 3.61
CLN3-225ENST00000566824 DNAJC5BQ9UF47 199 aa37.32■■■■□ 3.56
CLN3-225ENST00000566824 EIF4G1Q04637 1599 aaKnown RBP37.09■■■■□ 3.53
CLN3-225ENST00000566824 CC2D2AQ9P2K1 1620 aa36.9■■■■□ 3.5
CLN3-225ENST00000566824 CECR2Q9BXF3 1484 aa36.86■■■■□ 3.49
CLN3-225ENST00000566824 SMARCA4P51532 1647 aa36.63■■■■□ 3.45
CLN3-225ENST00000566824 BAZ1AQ9NRL2 1556 aaPredicted RBP36.55■■■■□ 3.44
CLN3-225ENST00000566824 MROH2BQ7Z745 1585 aa36.49■■■■□ 3.43
CLN3-225ENST00000566824 ATAD2BQ9ULI0 1458 aa36.34■■■■□ 3.41
CLN3-225ENST00000566824 SMARCA2P51531 1590 aa36.25■■■■□ 3.39
CLN3-225ENST00000566824 NCAPD3P42695 1498 aa36.24■■■■□ 3.39
CLN3-225ENST00000566824 PEG3Q9GZU2 1588 aa36.21■■■■□ 3.39
CLN3-225ENST00000566824 WIZO95785 1651 aa36.13■■■■□ 3.37
CLN3-225ENST00000566824 RSF1Q96T23 1441 aaPredicted RBP36.12■■■■□ 3.37
CLN3-225ENST00000566824 HMGXB3Q12766 1538 aa36.08■■■■□ 3.37
CLN3-225ENST00000566824 BAZ1BQ9UIG0 1483 aaKnown RBP36.02■■■■□ 3.36
CLN3-225ENST00000566824 TOP2AP11388 1531 aaKnown RBP35.66■■■■□ 3.3
CLN3-225ENST00000566824 NESP48681 1621 aa35.44■■■■□ 3.26
CLN3-225ENST00000566824 SUPT5HO00267 1087 aaKnown RBP35.4■■■■□ 3.26
CLN3-225ENST00000566824 CCDC88BA6NC98 1476 aa35.28■■■■□ 3.24
CLN3-225ENST00000566824 LAMC3Q9Y6N6 1575 aa35.23■■■■□ 3.23
CLN3-225ENST00000566824 CADPSQ9ULU8 1353 aa35.2■■■■□ 3.23
CLN3-225ENST00000566824 CFTRP13569 1480 aa35.06■■■■□ 3.2
CLN3-225ENST00000566824 ERCC6Q03468 1493 aa35.05■■■■□ 3.2
CLN3-225ENST00000566824 KIF21AQ7Z4S6 1674 aa35.02■■■■□ 3.2
CLN3-225ENST00000566824 PDS5BQ9NTI5 1447 aa34.95■■■■□ 3.18
CLN3-225ENST00000566824 PRDM2Q13029 1718 aa34.86■■■■□ 3.17
CLN3-225ENST00000566824 FANCD2Q9BXW9 1451 aa34.83■■■■□ 3.17
CLN3-225ENST00000566824 THOC2Q8NI27 1593 aaKnown RBP34.79■■■■□ 3.16
CLN3-225ENST00000566824 CEP164Q9UPV0 1460 aa34.73■■■■□ 3.15
CLN3-225ENST00000566824 MRC2Q9UBG0 1479 aa34.64■■■■□ 3.14
CLN3-225ENST00000566824 CUX2O14529 1486 aa34.56■■■■□ 3.12
CLN3-225ENST00000566824 WDR62O43379 1518 aa34.53■■■■□ 3.12
CLN3-225ENST00000566824 URB2Q14146 1524 aaKnown RBP34.53■■■■□ 3.12
CLN3-225ENST00000566824 TOPBP1Q92547 1522 aa34.32■■■■□ 3.08
CLN3-225ENST00000566824 DNMBPQ6XZF7 1577 aa34.28■■■■□ 3.08
CLN3-225ENST00000566824 CUX1P39880 1505 aa34.2■■■■□ 3.07
CLN3-225ENST00000566824 ABCC8Q09428 1581 aa34.2■■■■□ 3.06
CLN3-225ENST00000566824 POLA1P09884 1462 aaPredicted RBP34.05■■■■□ 3.04
CLN3-225ENST00000566824 FGD5Q6ZNL6 1462 aa34■■■■□ 3.03
CLN3-225ENST00000566824 SYNJ1O43426 1573 aa34■■■■□ 3.03
CLN3-225ENST00000566824 WRNQ14191 1432 aaPredicted RBP eCLIP33.99■■■■□ 3.03
CLN3-225ENST00000566824 IFT140Q96RY7 1462 aa33.98■■■■□ 3.03
CLN3-225ENST00000566824 TARBP1Q13395 1621 aaKnown RBP33.97■■■■□ 3.03
CLN3-225ENST00000566824 RAD54L2Q9Y4B4 1467 aa33.95■■■■□ 3.03
CLN3-225ENST00000566824 BIVM-ERCC5R4GMW8 1640 aa33.94■■■■□ 3.02
CLN3-225ENST00000566824 ZNF608Q9ULD9 1512 aaPredicted RBP33.93■■■■□ 3.02
CLN3-225ENST00000566824 TOP2BQ02880 1626 aa33.92■■■■□ 3.02
CLN3-225ENST00000566824 SOGA1O94964 1423 aa33.88■■■■□ 3.01
CLN3-225ENST00000566824 EIF4G3O43432 1585 aaKnown RBP33.77■■■■□ 3
CLN3-225ENST00000566824 WDR97A6NE52 1622 aa33.76■■■□□ 2.99
CLN3-225ENST00000566824 AQRO60306 1485 aaKnown RBP eCLIP33.75■■■□□ 2.996e-6■■■■□ 25.1
CLN3-225ENST00000566824 TDRD9Q8NDG6 1382 aaKnown RBP33.71■■■□□ 2.99
CLN3-225ENST00000566824 ABCA10Q8WWZ4 1543 aa33.64■■■□□ 2.98
CLN3-225ENST00000566824 ABCA5Q8WWZ7 1642 aa33.55■■■□□ 2.96
CLN3-225ENST00000566824 GAPVD1Q14C86 1478 aa33.49■■■□□ 2.95
CLN3-225ENST00000566824 PBRM1Q86U86 1689 aa33.47■■■□□ 2.95
CLN3-225ENST00000566824 GRIN2BQ13224 1484 aa33.43■■■□□ 2.94
CLN3-225ENST00000566824 SNAPC4Q5SXM2 1469 aa33.4■■■□□ 2.94
CLN3-225ENST00000566824 CHD1O14646 1710 aa33.34■■■□□ 2.93
CLN3-225ENST00000566824 TRIM41Q8WV44 630 aa33.34■■■□□ 2.93
CLN3-225ENST00000566824 MAGI1Q96QZ7 1491 aaPredicted RBP33.3■■■□□ 2.92
CLN3-225ENST00000566824 DNAJC5Q9H3Z4 198 aa33.28■■■□□ 2.92
CLN3-225ENST00000566824 FBLN2P98095 1184 aa33.24■■■□□ 2.91
CLN3-225ENST00000566824 ERICH3Q5RHP9 1530 aa33.23■■■□□ 2.91
CLN3-225ENST00000566824 KIF27Q86VH2 1401 aa33.23■■■□□ 2.91
CLN3-225ENST00000566824 CHIC1Q5VXU3 224 aa33.2■■■□□ 2.91
CLN3-225ENST00000566824 ADAMTS12P58397 1594 aa33.19■■■□□ 2.9
CLN3-225ENST00000566824 OSCARQ8IYS5 282 aa33.19■■■□□ 2.9
CLN3-225ENST00000566824 SYNJ2O15056 1496 aa33.19■■■□□ 2.9
CLN3-225ENST00000566824 RUSC2Q8N2Y8 1516 aa33.19■■■□□ 2.9
CLN3-225ENST00000566824 CHMP7Q8WUX9 453 aaPredicted RBP33.14■■■□□ 2.9
CLN3-225ENST00000566824 IGF1RP08069 1367 aa33.13■■■□□ 2.89
CLN3-225ENST00000566824 FHAD1B1AJZ9 1412 aa33.09■■■□□ 2.89
CLN3-225ENST00000566824 GRIN2AQ12879 1464 aa33.03■■■□□ 2.88
CLN3-225ENST00000566824 CUL7Q14999 1698 aa32.98■■■□□ 2.87
CLN3-225ENST00000566824 CLASP1Q7Z460 1538 aa32.93■■■□□ 2.86
CLN3-225ENST00000566824 CEP170Q5SW79 1584 aa32.92■■■□□ 2.86
CLN3-225ENST00000566824 CARMIL1Q5VZK9 1371 aa32.91■■■□□ 2.86
CLN3-225ENST00000566824 NUP160Q12769 1436 aa32.87■■■□□ 2.85
CLN3-225ENST00000566824 FAM9AQ8IZU1 332 aaPredicted RBP32.77■■■□□ 2.84
CLN3-225ENST00000566824 RIMBP3CA6NJZ7 1639 aa32.74■■■□□ 2.83
CLN3-225ENST00000566824 RIMBP3BA6NNM3 1639 aa32.74■■■□□ 2.83
CLN3-225ENST00000566824 RIMBP3Q9UFD9 1639 aa32.74■■■□□ 2.83
CLN3-225ENST00000566824 RAPGEF2Q9Y4G8 1499 aa32.73■■■□□ 2.83
CLN3-225ENST00000566824 ARHGEF11O15085 1522 aa32.72■■■□□ 2.83
CLN3-225ENST00000566824 CSRNP3Q8WYN3 585 aa32.71■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms