RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 NISCHQ9Y2I1 1504 aa43.26■■■■■ 4.52
CLN3-233ENST00000568452 CCDC180Q9P1Z9 1646 aa37.82■■■■□ 3.65
CLN3-233ENST00000568452 ZCCHC6Q5VYS8 1495 aaKnown RBP36.33■■■■□ 3.41
CLN3-233ENST00000568452 ABCC9O60706 1549 aa36.03■■■■□ 3.36
CLN3-233ENST00000568452 DCAF1Q9Y4B6 1507 aa35.84■■■■□ 3.33
CLN3-233ENST00000568452 DCAF8L2P0C7V8 631 aa35.7■■■■□ 3.31
CLN3-233ENST00000568452 MYO15BQ96JP2 1530 aa35.48■■■■□ 3.27
CLN3-233ENST00000568452 NACADO15069 1562 aa35.26■■■■□ 3.24
CLN3-233ENST00000568452 SHROOM4Q9ULL8 1493 aa35.11■■■■□ 3.21
CLN3-233ENST00000568452 RB1CC1Q8TDY2 1594 aa34.98■■■■□ 3.19
CLN3-233ENST00000568452 SCRIBQ14160 1630 aa34.67■■■■□ 3.14
CLN3-233ENST00000568452 UNC13AQ9UPW8 1703 aa34.15■■■■□ 3.06
CLN3-233ENST00000568452 BICRAQ9NZM4 1560 aa33.84■■■■□ 3.01
CLN3-233ENST00000568452 PABPN1Q86U42 306 aaKnown RBP eCLIP33.81■■■■□ 3
CLN3-233ENST00000568452 SUPT5HO00267 1087 aaKnown RBP33.76■■■■□ 3
CLN3-233ENST00000568452 CECR2Q9BXF3 1484 aa33.55■■■□□ 2.96
CLN3-233ENST00000568452 RSF1Q96T23 1441 aaPredicted RBP33.5■■■□□ 2.95
CLN3-233ENST00000568452 BAZ1AQ9NRL2 1556 aaPredicted RBP33.45■■■□□ 2.94
CLN3-233ENST00000568452 MROH2BQ7Z745 1585 aa33.37■■■□□ 2.93
CLN3-233ENST00000568452 SMARCA4P51532 1647 aa33.27■■■□□ 2.92
CLN3-233ENST00000568452 WIZO95785 1651 aa33.08■■■□□ 2.89
CLN3-233ENST00000568452 PEG3Q9GZU2 1588 aa32.9■■■□□ 2.86
CLN3-233ENST00000568452 EIF4G1Q04637 1599 aaKnown RBP32.89■■■□□ 2.86
CLN3-233ENST00000568452 TOP2AP11388 1531 aaKnown RBP32.81■■■□□ 2.84
CLN3-233ENST00000568452 SMARCA2P51531 1590 aa32.79■■■□□ 2.84
CLN3-233ENST00000568452 ATAD2BQ9ULI0 1458 aa32.76■■■□□ 2.83
CLN3-233ENST00000568452 CC2D2AQ9P2K1 1620 aa32.58■■■□□ 2.81
CLN3-233ENST00000568452 BAZ1BQ9UIG0 1483 aaKnown RBP32.58■■■□□ 2.81
CLN3-233ENST00000568452 NCAPD3P42695 1498 aa32.53■■■□□ 2.8
CLN3-233ENST00000568452 HMGXB3Q12766 1538 aa32.48■■■□□ 2.79
CLN3-233ENST00000568452 CCDC88BA6NC98 1476 aa32.43■■■□□ 2.78
CLN3-233ENST00000568452 DNAJC5BQ9UF47 199 aa32.43■■■□□ 2.78
CLN3-233ENST00000568452 CHIC1Q5VXU3 224 aa32.29■■■□□ 2.76
CLN3-233ENST00000568452 TRIM41Q8WV44 630 aa31.82■■■□□ 2.68
CLN3-233ENST00000568452 CFTRP13569 1480 aa31.76■■■□□ 2.68
CLN3-233ENST00000568452 CADPSQ9ULU8 1353 aa31.68■■■□□ 2.66
CLN3-233ENST00000568452 ABCC8Q09428 1581 aa31.66■■■□□ 2.66
CLN3-233ENST00000568452 PRDM2Q13029 1718 aa31.59■■■□□ 2.65
CLN3-233ENST00000568452 WRNQ14191 1432 aaPredicted RBP eCLIP31.56■■■□□ 2.64
CLN3-233ENST00000568452 LAMC3Q9Y6N6 1575 aa31.45■■■□□ 2.63
CLN3-233ENST00000568452 SYNJ1O43426 1573 aa31.38■■■□□ 2.61
CLN3-233ENST00000568452 NESP48681 1621 aa31.37■■■□□ 2.61
CLN3-233ENST00000568452 TOP2BQ02880 1626 aa31.32■■■□□ 2.6
CLN3-233ENST00000568452 FANCD2Q9BXW9 1451 aa31.31■■■□□ 2.6
CLN3-233ENST00000568452 BIVM-ERCC5R4GMW8 1640 aa31.29■■■□□ 2.6
CLN3-233ENST00000568452 PDS5BQ9NTI5 1447 aa31.23■■■□□ 2.59
CLN3-233ENST00000568452 CUX1P39880 1505 aa31.23■■■□□ 2.59
CLN3-233ENST00000568452 CEP164Q9UPV0 1460 aa31.15■■■□□ 2.58
CLN3-233ENST00000568452 FAM9AQ8IZU1 332 aaPredicted RBP31.14■■■□□ 2.58
CLN3-233ENST00000568452 EEA1Q15075 1411 aa31.13■■■□□ 2.57
CLN3-233ENST00000568452 SOGA1O94964 1423 aa31.06■■■□□ 2.56
CLN3-233ENST00000568452 DNMBPQ6XZF7 1577 aa31.03■■■□□ 2.56
CLN3-233ENST00000568452 ERCC6Q03468 1493 aa31■■■□□ 2.55
CLN3-233ENST00000568452 KIF21AQ7Z4S6 1674 aa31■■■□□ 2.55
CLN3-233ENST00000568452 LOC105371045A0A1W2PR82 267 aa30.98■■■□□ 2.55
CLN3-233ENST00000568452 TOPBP1Q92547 1522 aa30.95■■■□□ 2.55
CLN3-233ENST00000568452 RUSC2Q8N2Y8 1516 aa30.92■■■□□ 2.54
CLN3-233ENST00000568452 FGD5Q6ZNL6 1462 aa30.91■■■□□ 2.54
CLN3-233ENST00000568452 CSRNP3Q8WYN3 585 aa30.9■■■□□ 2.54
CLN3-233ENST00000568452 URB2Q14146 1524 aaKnown RBP30.9■■■□□ 2.54
CLN3-233ENST00000568452 MRC2Q9UBG0 1479 aa30.81■■■□□ 2.52
CLN3-233ENST00000568452 KIF27Q86VH2 1401 aa30.8■■■□□ 2.52
CLN3-233ENST00000568452 POLA1P09884 1462 aaPredicted RBP30.78■■■□□ 2.52
CLN3-233ENST00000568452 THOC2Q8NI27 1593 aaKnown RBP30.71■■■□□ 2.51
CLN3-233ENST00000568452 CUX2O14529 1486 aa30.7■■■□□ 2.51
CLN3-233ENST00000568452 ABCA10Q8WWZ4 1543 aa30.67■■■□□ 2.5
CLN3-233ENST00000568452 KIF21BO75037 1637 aa30.67■■■□□ 2.5
CLN3-233ENST00000568452 GOLGA3Q08378 1498 aa30.65■■■□□ 2.5
CLN3-233ENST00000568452 RAD54L2Q9Y4B4 1467 aa30.64■■■□□ 2.5
CLN3-233ENST00000568452 EHMT2Q96KQ7 1210 aa30.64■■■□□ 2.5
CLN3-233ENST00000568452 WDR62O43379 1518 aa30.63■■■□□ 2.49
CLN3-233ENST00000568452 WDR97A6NE52 1622 aa30.55■■■□□ 2.48
CLN3-233ENST00000568452 PRXQ9BXM0 1461 aa30.53■■■□□ 2.48
CLN3-233ENST00000568452 TNIKQ9UKE5 1360 aa30.53■■■□□ 2.48
CLN3-233ENST00000568452 ERICH3Q5RHP9 1530 aa30.51■■■□□ 2.47
CLN3-233ENST00000568452 IGF1RP08069 1367 aa30.49■■■□□ 2.47
CLN3-233ENST00000568452 TARBP1Q13395 1621 aaKnown RBP30.49■■■□□ 2.47
CLN3-233ENST00000568452 UBTFP17480 764 aaKnown RBP30.48■■■□□ 2.47
CLN3-233ENST00000568452 RAPGEF2Q9Y4G8 1499 aa30.46■■■□□ 2.47
CLN3-233ENST00000568452 IFT140Q96RY7 1462 aa30.43■■■□□ 2.46
CLN3-233ENST00000568452 ABCA5Q8WWZ7 1642 aa30.41■■■□□ 2.46
CLN3-233ENST00000568452 GAPVD1Q14C86 1478 aa30.37■■■□□ 2.45
CLN3-233ENST00000568452 CARMIL1Q5VZK9 1371 aa30.37■■■□□ 2.45
CLN3-233ENST00000568452 TDRD9Q8NDG6 1382 aaKnown RBP30.37■■■□□ 2.45
CLN3-233ENST00000568452 CUL7Q14999 1698 aa30.32■■■□□ 2.44
CLN3-233ENST00000568452 CEP162Q5TB80 1403 aa30.31■■■□□ 2.44
CLN3-233ENST00000568452 AQRO60306 1485 aaKnown RBP eCLIP30.19■■■□□ 2.426e-6■■■■□ 25.1
CLN3-233ENST00000568452 PBRM1Q86U86 1689 aa30.18■■■□□ 2.42
CLN3-233ENST00000568452 GRIN2BQ13224 1484 aa30.17■■■□□ 2.42
CLN3-233ENST00000568452 ZNF608Q9ULD9 1512 aaPredicted RBP30.16■■■□□ 2.42
CLN3-233ENST00000568452 CLIP1P30622 1438 aa30.12■■■□□ 2.41
CLN3-233ENST00000568452 EIF4G3O43432 1585 aaKnown RBP30.09■■■□□ 2.41
CLN3-233ENST00000568452 FHAD1B1AJZ9 1412 aa30.07■■■□□ 2.4
CLN3-233ENST00000568452 ADAMTS12P58397 1594 aa30.03■■■□□ 2.4
CLN3-233ENST00000568452 SNAPC4Q5SXM2 1469 aa29.94■■■□□ 2.38
CLN3-233ENST00000568452 MAGI1Q96QZ7 1491 aaPredicted RBP29.94■■■□□ 2.38
CLN3-233ENST00000568452 CTTNBP2Q8WZ74 1663 aa29.93■■■□□ 2.38
CLN3-233ENST00000568452 RANGAP1P46060 587 aaPredicted RBP29.92■■■□□ 2.38
CLN3-233ENST00000568452 VPS8Q8N3P4 1428 aa29.86■■■□□ 2.37
CLN3-233ENST00000568452 ARHGAP35Q9NRY4 1499 aa29.84■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms