RNA–Protein interactions for RNA: ENST00000519489.1

CTNNA1-216, Transcript of catenin alpha 1, humanhuman

TSL 2

Gene CTNNA1, Length 358 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-216ENST00000519489 AEBP2Q6ZN18 517 aaPredicted RBP21.7■■□□□ 1.06
CTNNA1-216ENST00000519489 CHIC1Q5VXU3 224 aa20.74■□□□□ 0.91
CTNNA1-216ENST00000519489 SENP3Q9H4L4 574 aaPredicted RBP18.55■□□□□ 0.56
CTNNA1-216ENST00000519489 NISCHQ9Y2I1 1504 aa18.45■□□□□ 0.54
CTNNA1-216ENST00000519489 PHF23Q9BUL5 403 aaPredicted RBP18.28■□□□□ 0.52
CTNNA1-216ENST00000519489 DNAJC5BQ9UF47 199 aa18.14■□□□□ 0.49
CTNNA1-216ENST00000519489 ABCC9O60706 1549 aa18.09■□□□□ 0.49
CTNNA1-216ENST00000519489 DNAJC5Q9H3Z4 198 aa17.25■□□□□ 0.35
CTNNA1-216ENST00000519489 FOXD1Q16676 465 aa17.23■□□□□ 0.35
CTNNA1-216ENST00000519489 CCDC180Q9P1Z9 1646 aa16.82■□□□□ 0.28
CTNNA1-216ENST00000519489 PABPN1Q86U42 306 aaKnown RBP eCLIP16.77■□□□□ 0.28
CTNNA1-216ENST00000519489 PLPPR3Q6T4P5 718 aa16.63■□□□□ 0.25
CTNNA1-216ENST00000519489 RB1CC1Q8TDY2 1594 aa16.57■□□□□ 0.24
CTNNA1-216ENST00000519489 CECR2Q9BXF3 1484 aa16.36■□□□□ 0.21
CTNNA1-216ENST00000519489 BICRAQ9NZM4 1560 aa16.33■□□□□ 0.2
CTNNA1-216ENST00000519489 NACADO15069 1562 aa16.22■□□□□ 0.19
CTNNA1-216ENST00000519489 CC2D2AQ9P2K1 1620 aa16.21■□□□□ 0.19
CTNNA1-216ENST00000519489 UNC13AQ9UPW8 1703 aa16.2■□□□□ 0.18
CTNNA1-216ENST00000519489 PPP6R1Q9UPN7 881 aa16.15■□□□□ 0.18
CTNNA1-216ENST00000519489 MSH5O43196 834 aa16.14■□□□□ 0.17
CTNNA1-216ENST00000519489 PIAS4Q8N2W9 510 aaPredicted RBP16.12■□□□□ 0.17
CTNNA1-216ENST00000519489 ADRA2BP18089 450 aa16.09■□□□□ 0.17
CTNNA1-216ENST00000519489 DCAF8L2P0C7V8 631 aa16.04■□□□□ 0.16
CTNNA1-216ENST00000519489 TRIM41Q8WV44 630 aa16.02■□□□□ 0.16
CTNNA1-216ENST00000519489 EIF4G1Q04637 1599 aaKnown RBP15.92■□□□□ 0.14
CTNNA1-216ENST00000519489 CUX2O14529 1486 aa15.9■□□□□ 0.14
CTNNA1-216ENST00000519489 SHROOM4Q9ULL8 1493 aa15.77■□□□□ 0.11
CTNNA1-216ENST00000519489 MYO15BQ96JP2 1530 aa15.67■□□□□ 0.1
CTNNA1-216ENST00000519489 ERCC6Q03468 1493 aa15.56■□□□□ 0.08
CTNNA1-216ENST00000519489 POTEDQ86YR6 584 aa15.54■□□□□ 0.08
CTNNA1-216ENST00000519489 SCRIBQ14160 1630 aa15.44■□□□□ 0.06
CTNNA1-216ENST00000519489 NESP48681 1621 aa15.3■□□□□ 0.04
CTNNA1-216ENST00000519489 THOC2Q8NI27 1593 aaKnown RBP15.23■□□□□ 0.03
CTNNA1-216ENST00000519489 NCAPD3P42695 1498 aa15.11■□□□□ 0.01
CTNNA1-216ENST00000519489 DCAF1Q9Y4B6 1507 aa15.1■□□□□ 0.01
CTNNA1-216ENST00000519489 ZCCHC6Q5VYS8 1495 aaKnown RBP15.08■□□□□ 0
CTNNA1-216ENST00000519489 OSCARQ8IYS5 282 aa15.05■□□□□ -0
CTNNA1-216ENST00000519489 SMARCA2P51531 1590 aa15.03■□□□□ -0
CTNNA1-216ENST00000519489 BAZ1AQ9NRL2 1556 aaPredicted RBP14.97□□□□□ -0.01
CTNNA1-216ENST00000519489 RIMBP3CA6NJZ7 1639 aa14.96□□□□□ -0.01
CTNNA1-216ENST00000519489 RIMBP3BA6NNM3 1639 aa14.96□□□□□ -0.01
CTNNA1-216ENST00000519489 RIMBP3Q9UFD9 1639 aa14.96□□□□□ -0.01
CTNNA1-216ENST00000519489 ILDR1Q86SU0 546 aaPredicted RBP14.95□□□□□ -0.02
CTNNA1-216ENST00000519489 ATAD2BQ9ULI0 1458 aa14.94□□□□□ -0.02
CTNNA1-216ENST00000519489 TRHP20396 242 aaPredicted RBP14.93□□□□□ -0.02
CTNNA1-216ENST00000519489 KIF21AQ7Z4S6 1674 aa14.88□□□□□ -0.03
CTNNA1-216ENST00000519489 ARHGEF11O15085 1522 aa14.83□□□□□ -0.04
CTNNA1-216ENST00000519489 CYB5RLQ6IPT4 315 aa14.83□□□□□ -0.04
CTNNA1-216ENST00000519489 SCAF1Q9H7N4 1312 aaKnown RBP14.81□□□□□ -0.04
CTNNA1-216ENST00000519489 HMGXB3Q12766 1538 aa14.81□□□□□ -0.04
CTNNA1-216ENST00000519489 LAMC3Q9Y6N6 1575 aa14.81□□□□□ -0.04
CTNNA1-216ENST00000519489 PDS5BQ9NTI5 1447 aa14.79□□□□□ -0.04
CTNNA1-216ENST00000519489 WDR62O43379 1518 aa14.77□□□□□ -0.04
CTNNA1-216ENST00000519489 MRC2Q9UBG0 1479 aa14.77□□□□□ -0.04
CTNNA1-216ENST00000519489 MAPK8IP2Q13387 824 aaPredicted RBP14.74□□□□□ -0.05
CTNNA1-216ENST00000519489 DMRT2Q9Y5R5 561 aa14.72□□□□□ -0.05
CTNNA1-216ENST00000519489 ARAP1Q96P48 1450 aa14.68□□□□□ -0.06
CTNNA1-216ENST00000519489 BAZ1BQ9UIG0 1483 aaKnown RBP14.64□□□□□ -0.07
CTNNA1-216ENST00000519489 CADPSQ9ULU8 1353 aa14.6□□□□□ -0.07
CTNNA1-216ENST00000519489 SMARCA4P51532 1647 aa14.56□□□□□ -0.08
CTNNA1-216ENST00000519489 PPP4R3CPQ6ZMV5 832 aa14.56□□□□□ -0.08
CTNNA1-216ENST00000519489 ZNF608Q9ULD9 1512 aaPredicted RBP14.46□□□□□ -0.09
CTNNA1-216ENST00000519489 CEP164Q9UPV0 1460 aa14.46□□□□□ -0.09
CTNNA1-216ENST00000519489 PEG3Q9GZU2 1588 aa14.44□□□□□ -0.1
CTNNA1-216ENST00000519489 URB2Q14146 1524 aaKnown RBP14.44□□□□□ -0.1
CTNNA1-216ENST00000519489 FANCD2Q9BXW9 1451 aa14.42□□□□□ -0.1
CTNNA1-216ENST00000519489 KDM4FA0A1W2PPD8 638 aa14.36□□□□□ -0.11
CTNNA1-216ENST00000519489 RSF1Q96T23 1441 aaPredicted RBP14.35□□□□□ -0.11
CTNNA1-216ENST00000519489 CNKSR2Q8WXI2 1034 aa14.29□□□□□ -0.12
CTNNA1-216ENST00000519489 MROH2BQ7Z745 1585 aa14.28□□□□□ -0.12
CTNNA1-216ENST00000519489 HOXD11P31277 338 aaPredicted RBP14.24□□□□□ -0.13
CTNNA1-216ENST00000519489 IFT140Q96RY7 1462 aa14.24□□□□□ -0.13
CTNNA1-216ENST00000519489 CHD1O14646 1710 aa14.21□□□□□ -0.13
CTNNA1-216ENST00000519489 CFTRP13569 1480 aa14.21□□□□□ -0.13
CTNNA1-216ENST00000519489 FBLN2P98095 1184 aa14.21□□□□□ -0.13
CTNNA1-216ENST00000519489 AQRO60306 1485 aaKnown RBP eCLIP14.18□□□□□ -0.143e-7■■■■■ 35.5
CTNNA1-216ENST00000519489 EIF4G3O43432 1585 aaKnown RBP14.17□□□□□ -0.14
CTNNA1-216ENST00000519489 RNF216Q9NWF9 866 aaPredicted RBP14.15□□□□□ -0.14
CTNNA1-216ENST00000519489 CLASP1Q7Z460 1538 aa14.15□□□□□ -0.14
CTNNA1-216ENST00000519489 GAPVD1Q14C86 1478 aa14.07□□□□□ -0.16
CTNNA1-216ENST00000519489 FBXO41Q8TF61 875 aa14.07□□□□□ -0.16
CTNNA1-216ENST00000519489 NCBP3Q53F19 620 aaKnown RBP14.05□□□□□ -0.16
CTNNA1-216ENST00000519489 TOPBP1Q92547 1522 aa14.04□□□□□ -0.16
CTNNA1-216ENST00000519489 ILDR2Q71H61 639 aa14.03□□□□□ -0.16
CTNNA1-216ENST00000519489 DCAF8L1A6NGE4 600 aa14.01□□□□□ -0.17
CTNNA1-216ENST00000519489 LMTK3Q96Q04 1460 aa14□□□□□ -0.17
CTNNA1-216ENST00000519489 TARBP1Q13395 1621 aaKnown RBP13.98□□□□□ -0.17
CTNNA1-216ENST00000519489 HECW2Q9P2P5 1572 aa13.98□□□□□ -0.17
CTNNA1-216ENST00000519489 WIZO95785 1651 aa13.98□□□□□ -0.17
CTNNA1-216ENST00000519489 SOCS7O14512 581 aa13.97□□□□□ -0.17
CTNNA1-216ENST00000519489 ERCC6L2Q5T890 1561 aa13.96□□□□□ -0.17
CTNNA1-216ENST00000519489 KIF13AQ9H1H9 1805 aa13.94□□□□□ -0.18
CTNNA1-216ENST00000519489 SNAPC4Q5SXM2 1469 aa13.93□□□□□ -0.18
CTNNA1-216ENST00000519489 TDRD9Q8NDG6 1382 aaKnown RBP13.93□□□□□ -0.18
CTNNA1-216ENST00000519489 CHMP7Q8WUX9 453 aaPredicted RBP13.91□□□□□ -0.18
CTNNA1-216ENST00000519489 SYNJ1O43426 1573 aa13.9□□□□□ -0.18
CTNNA1-216ENST00000519489 RAD54L2Q9Y4B4 1467 aa13.87□□□□□ -0.19
CTNNA1-216ENST00000519489 FAM69CQ0P6D2 419 aa13.86□□□□□ -0.19
CTNNA1-216ENST00000519489 SYNJ2O15056 1496 aa13.86□□□□□ -0.19
CTNNA1-216ENST00000519489 ADGRL1O94910 1474 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms