RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 NISCHQ9Y2I1 1504 aa41.73■■■■■ 4.27
CLN3-263ENST00000637871 CCDC180Q9P1Z9 1646 aa36.86■■■■□ 3.49
CLN3-263ENST00000637871 ABCC9O60706 1549 aa35.74■■■■□ 3.31
CLN3-263ENST00000637871 ZCCHC6Q5VYS8 1495 aaKnown RBP34.87■■■■□ 3.17
CLN3-263ENST00000637871 DCAF8L2P0C7V8 631 aa34.75■■■■□ 3.15
CLN3-263ENST00000637871 NACADO15069 1562 aa34.5■■■■□ 3.11
CLN3-263ENST00000637871 RB1CC1Q8TDY2 1594 aa34.46■■■■□ 3.11
CLN3-263ENST00000637871 DCAF1Q9Y4B6 1507 aa34.45■■■■□ 3.1
CLN3-263ENST00000637871 MYO15BQ96JP2 1530 aa34.37■■■■□ 3.09
CLN3-263ENST00000637871 UNC13AQ9UPW8 1703 aa33.83■■■■□ 3.01
CLN3-263ENST00000637871 SCRIBQ14160 1630 aa33.83■■■■□ 3.01
CLN3-263ENST00000637871 BICRAQ9NZM4 1560 aa33.49■■■□□ 2.95
CLN3-263ENST00000637871 PABPN1Q86U42 306 aaKnown RBP eCLIP33.49■■■□□ 2.95
CLN3-263ENST00000637871 SHROOM4Q9ULL8 1493 aa33.44■■■□□ 2.94
CLN3-263ENST00000637871 EIF4G1Q04637 1599 aaKnown RBP32.55■■■□□ 2.8
CLN3-263ENST00000637871 CECR2Q9BXF3 1484 aa32.54■■■□□ 2.8
CLN3-263ENST00000637871 DNAJC5BQ9UF47 199 aa32.37■■■□□ 2.77
CLN3-263ENST00000637871 SMARCA4P51532 1647 aa32.32■■■□□ 2.76
CLN3-263ENST00000637871 CC2D2AQ9P2K1 1620 aa32.31■■■□□ 2.76
CLN3-263ENST00000637871 BAZ1AQ9NRL2 1556 aaPredicted RBP32.28■■■□□ 2.76
CLN3-263ENST00000637871 MROH2BQ7Z745 1585 aa32.24■■■□□ 2.75
CLN3-263ENST00000637871 RSF1Q96T23 1441 aaPredicted RBP31.99■■■□□ 2.71
CLN3-263ENST00000637871 ATAD2BQ9ULI0 1458 aa31.98■■■□□ 2.71
CLN3-263ENST00000637871 WIZO95785 1651 aa31.95■■■□□ 2.71
CLN3-263ENST00000637871 SMARCA2P51531 1590 aa31.93■■■□□ 2.7
CLN3-263ENST00000637871 SUPT5HO00267 1087 aaKnown RBP31.92■■■□□ 2.7
CLN3-263ENST00000637871 PEG3Q9GZU2 1588 aa31.91■■■□□ 2.7
CLN3-263ENST00000637871 NCAPD3P42695 1498 aa31.83■■■□□ 2.69
CLN3-263ENST00000637871 BAZ1BQ9UIG0 1483 aaKnown RBP31.76■■■□□ 2.68
CLN3-263ENST00000637871 HMGXB3Q12766 1538 aa31.75■■■□□ 2.67
CLN3-263ENST00000637871 TOP2AP11388 1531 aaKnown RBP31.55■■■□□ 2.64
CLN3-263ENST00000637871 CCDC88BA6NC98 1476 aa31.2■■■□□ 2.58
CLN3-263ENST00000637871 NESP48681 1621 aa31.1■■■□□ 2.57
CLN3-263ENST00000637871 CHIC1Q5VXU3 224 aa30.95■■■□□ 2.55
CLN3-263ENST00000637871 CADPSQ9ULU8 1353 aa30.94■■■□□ 2.54
CLN3-263ENST00000637871 LAMC3Q9Y6N6 1575 aa30.94■■■□□ 2.54
CLN3-263ENST00000637871 CFTRP13569 1480 aa30.88■■■□□ 2.53
CLN3-263ENST00000637871 KIF21AQ7Z4S6 1674 aa30.75■■■□□ 2.51
CLN3-263ENST00000637871 PRDM2Q13029 1718 aa30.74■■■□□ 2.51
CLN3-263ENST00000637871 ERCC6Q03468 1493 aa30.71■■■□□ 2.51
CLN3-263ENST00000637871 PDS5BQ9NTI5 1447 aa30.69■■■□□ 2.5
CLN3-263ENST00000637871 FANCD2Q9BXW9 1451 aa30.65■■■□□ 2.5
CLN3-263ENST00000637871 CEP164Q9UPV0 1460 aa30.56■■■□□ 2.48
CLN3-263ENST00000637871 THOC2Q8NI27 1593 aaKnown RBP30.48■■■□□ 2.47
CLN3-263ENST00000637871 MRC2Q9UBG0 1479 aa30.4■■■□□ 2.46
CLN3-263ENST00000637871 URB2Q14146 1524 aaKnown RBP30.36■■■□□ 2.45
CLN3-263ENST00000637871 ABCC8Q09428 1581 aa30.31■■■□□ 2.44
CLN3-263ENST00000637871 WDR62O43379 1518 aa30.3■■■□□ 2.44
CLN3-263ENST00000637871 TOPBP1Q92547 1522 aa30.22■■■□□ 2.43
CLN3-263ENST00000637871 CUX1P39880 1505 aa30.21■■■□□ 2.43
CLN3-263ENST00000637871 DNMBPQ6XZF7 1577 aa30.21■■■□□ 2.43
CLN3-263ENST00000637871 WRNQ14191 1432 aaPredicted RBP eCLIP30.14■■■□□ 2.42
CLN3-263ENST00000637871 SYNJ1O43426 1573 aa30.13■■■□□ 2.41
CLN3-263ENST00000637871 CUX2O14529 1486 aa30.12■■■□□ 2.41
CLN3-263ENST00000637871 TRIM41Q8WV44 630 aa30.1■■■□□ 2.41
CLN3-263ENST00000637871 BIVM-ERCC5R4GMW8 1640 aa30.04■■■□□ 2.4
CLN3-263ENST00000637871 TOP2BQ02880 1626 aa30.03■■■□□ 2.4
CLN3-263ENST00000637871 FGD5Q6ZNL6 1462 aa30.02■■■□□ 2.4
CLN3-263ENST00000637871 POLA1P09884 1462 aaPredicted RBP30.01■■■□□ 2.39
CLN3-263ENST00000637871 RAD54L2Q9Y4B4 1467 aa29.92■■■□□ 2.38
CLN3-263ENST00000637871 TARBP1Q13395 1621 aaKnown RBP29.87■■■□□ 2.37
CLN3-263ENST00000637871 IFT140Q96RY7 1462 aa29.86■■■□□ 2.37
CLN3-263ENST00000637871 SOGA1O94964 1423 aa29.85■■■□□ 2.37
CLN3-263ENST00000637871 ZNF608Q9ULD9 1512 aaPredicted RBP29.8■■■□□ 2.36
CLN3-263ENST00000637871 WDR97A6NE52 1622 aa29.77■■■□□ 2.36
CLN3-263ENST00000637871 EIF4G3O43432 1585 aaKnown RBP29.7■■■□□ 2.35
CLN3-263ENST00000637871 TDRD9Q8NDG6 1382 aaKnown RBP29.68■■■□□ 2.34
CLN3-263ENST00000637871 ABCA10Q8WWZ4 1543 aa29.68■■■□□ 2.34
CLN3-263ENST00000637871 LOC105371045A0A1W2PR82 267 aa29.67■■■□□ 2.34
CLN3-263ENST00000637871 AQRO60306 1485 aaKnown RBP eCLIP29.67■■■□□ 2.346e-6■■■■□ 25.1
CLN3-263ENST00000637871 ABCA5Q8WWZ7 1642 aa29.59■■■□□ 2.33
CLN3-263ENST00000637871 GAPVD1Q14C86 1478 aa29.53■■■□□ 2.32
CLN3-263ENST00000637871 PBRM1Q86U86 1689 aa29.52■■■□□ 2.32
CLN3-263ENST00000637871 RUSC2Q8N2Y8 1516 aa29.47■■■□□ 2.31
CLN3-263ENST00000637871 KIF27Q86VH2 1401 aa29.44■■■□□ 2.3
CLN3-263ENST00000637871 GRIN2BQ13224 1484 aa29.43■■■□□ 2.3
CLN3-263ENST00000637871 EEA1Q15075 1411 aa29.41■■■□□ 2.3
CLN3-263ENST00000637871 SNAPC4Q5SXM2 1469 aa29.41■■■□□ 2.3
CLN3-263ENST00000637871 FAM9AQ8IZU1 332 aaPredicted RBP29.38■■■□□ 2.29
CLN3-263ENST00000637871 ERICH3Q5RHP9 1530 aa29.32■■■□□ 2.28
CLN3-263ENST00000637871 MAGI1Q96QZ7 1491 aaPredicted RBP29.29■■■□□ 2.28
CLN3-263ENST00000637871 ADAMTS12P58397 1594 aa29.28■■■□□ 2.28
CLN3-263ENST00000637871 IGF1RP08069 1367 aa29.27■■■□□ 2.28
CLN3-263ENST00000637871 CHD1O14646 1710 aa29.26■■■□□ 2.27
CLN3-263ENST00000637871 FBLN2P98095 1184 aa29.21■■■□□ 2.27
CLN3-263ENST00000637871 SYNJ2O15056 1496 aa29.19■■■□□ 2.26
CLN3-263ENST00000637871 CUL7Q14999 1698 aa29.18■■■□□ 2.26
CLN3-263ENST00000637871 FHAD1B1AJZ9 1412 aa29.16■■■□□ 2.26
CLN3-263ENST00000637871 CHMP7Q8WUX9 453 aaPredicted RBP29.13■■■□□ 2.25
CLN3-263ENST00000637871 CARMIL1Q5VZK9 1371 aa29.11■■■□□ 2.25
CLN3-263ENST00000637871 GRIN2AQ12879 1464 aa29.1■■■□□ 2.25
CLN3-263ENST00000637871 CSRNP3Q8WYN3 585 aa29.09■■■□□ 2.25
CLN3-263ENST00000637871 TRIM26Q12899 539 aaPredicted RBP29.02■■■□□ 2.24
CLN3-263ENST00000637871 PRXQ9BXM0 1461 aa29.01■■■□□ 2.24
CLN3-263ENST00000637871 PCGF6Q9BYE7 350 aa28.99■■■□□ 2.23
CLN3-263ENST00000637871 CEP170Q5SW79 1584 aa28.99■■■□□ 2.23
CLN3-263ENST00000637871 RAPGEF2Q9Y4G8 1499 aa28.99■■■□□ 2.23
CLN3-263ENST00000637871 TNIKQ9UKE5 1360 aa28.97■■■□□ 2.23
CLN3-263ENST00000637871 OSCARQ8IYS5 282 aa28.95■■■□□ 2.23
CLN3-263ENST00000637871 EHMT2Q96KQ7 1210 aa28.95■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms