RNA–Protein interactions for RNA: ENST00000556432.1

ACTN1-219, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 558 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-219ENST00000556432 NISCHQ9Y2I1 1504 aa35.42■■■■□ 3.26
ACTN1-219ENST00000556432 ABCC9O60706 1549 aa32.54■■■□□ 2.8
ACTN1-219ENST00000556432 CCDC180Q9P1Z9 1646 aa31.97■■■□□ 2.71
ACTN1-219ENST00000556432 DNAJC5BQ9UF47 199 aa30.88■■■□□ 2.53
ACTN1-219ENST00000556432 RB1CC1Q8TDY2 1594 aa30.72■■■□□ 2.51
ACTN1-219ENST00000556432 NACADO15069 1562 aa30.37■■■□□ 2.45
ACTN1-219ENST00000556432 DCAF8L2P0C7V8 631 aa30.28■■■□□ 2.44
ACTN1-219ENST00000556432 PABPN1Q86U42 306 aaKnown RBP eCLIP30.24■■■□□ 2.43
ACTN1-219ENST00000556432 UNC13AQ9UPW8 1703 aa29.96■■■□□ 2.39
ACTN1-219ENST00000556432 BICRAQ9NZM4 1560 aa29.77■■■□□ 2.36
ACTN1-219ENST00000556432 MYO15BQ96JP2 1530 aa29.72■■■□□ 2.35
ACTN1-219ENST00000556432 CECR2Q9BXF3 1484 aa29.35■■■□□ 2.29
ACTN1-219ENST00000556432 SHROOM4Q9ULL8 1493 aa29.34■■■□□ 2.29
ACTN1-219ENST00000556432 CC2D2AQ9P2K1 1620 aa29.32■■■□□ 2.28
ACTN1-219ENST00000556432 ZCCHC6Q5VYS8 1495 aaKnown RBP29.25■■■□□ 2.27
ACTN1-219ENST00000556432 SCRIBQ14160 1630 aa29.2■■■□□ 2.26
ACTN1-219ENST00000556432 DCAF1Q9Y4B6 1507 aa29.18■■■□□ 2.26
ACTN1-219ENST00000556432 EIF4G1Q04637 1599 aaKnown RBP29.13■■■□□ 2.25
ACTN1-219ENST00000556432 DNAJC5Q9H3Z4 198 aa28.71■■■□□ 2.19
ACTN1-219ENST00000556432 CUX2O14529 1486 aa28.2■■■□□ 2.1
ACTN1-219ENST00000556432 ERCC6Q03468 1493 aa28.18■■■□□ 2.1
ACTN1-219ENST00000556432 NCAPD3P42695 1498 aa28.02■■■□□ 2.08
ACTN1-219ENST00000556432 ATAD2BQ9ULI0 1458 aa27.89■■■□□ 2.06
ACTN1-219ENST00000556432 SMARCA2P51531 1590 aa27.81■■■□□ 2.04
ACTN1-219ENST00000556432 NESP48681 1621 aa27.79■■■□□ 2.04
ACTN1-219ENST00000556432 HMGXB3Q12766 1538 aa27.78■■■□□ 2.04
ACTN1-219ENST00000556432 SMARCA4P51532 1647 aa27.75■■■□□ 2.03
ACTN1-219ENST00000556432 BAZ1BQ9UIG0 1483 aaKnown RBP27.65■■■□□ 2.02
ACTN1-219ENST00000556432 THOC2Q8NI27 1593 aaKnown RBP27.56■■■□□ 2
ACTN1-219ENST00000556432 BAZ1AQ9NRL2 1556 aaPredicted RBP27.55■■■□□ 2
ACTN1-219ENST00000556432 LAMC3Q9Y6N6 1575 aa27.48■■□□□ 1.99
ACTN1-219ENST00000556432 PEG3Q9GZU2 1588 aa27.42■■□□□ 1.98
ACTN1-219ENST00000556432 TRIM41Q8WV44 630 aa27.4■■□□□ 1.98
ACTN1-219ENST00000556432 KIF21AQ7Z4S6 1674 aa27.4■■□□□ 1.98
ACTN1-219ENST00000556432 PDS5BQ9NTI5 1447 aa27.39■■□□□ 1.97
ACTN1-219ENST00000556432 MROH2BQ7Z745 1585 aa27.31■■□□□ 1.96
ACTN1-219ENST00000556432 CADPSQ9ULU8 1353 aa27.18■■□□□ 1.94
ACTN1-219ENST00000556432 MRC2Q9UBG0 1479 aa27.18■■□□□ 1.94
ACTN1-219ENST00000556432 WDR62O43379 1518 aa27.09■■□□□ 1.93
ACTN1-219ENST00000556432 CEP164Q9UPV0 1460 aa26.99■■□□□ 1.91
ACTN1-219ENST00000556432 WIZO95785 1651 aa26.95■■□□□ 1.91
ACTN1-219ENST00000556432 FANCD2Q9BXW9 1451 aa26.9■■□□□ 1.9
ACTN1-219ENST00000556432 OSCARQ8IYS5 282 aa26.86■■□□□ 1.89
ACTN1-219ENST00000556432 CFTRP13569 1480 aa26.74■■□□□ 1.87
ACTN1-219ENST00000556432 URB2Q14146 1524 aaKnown RBP26.69■■□□□ 1.86
ACTN1-219ENST00000556432 TOP2AP11388 1531 aaKnown RBP26.59■■□□□ 1.85
ACTN1-219ENST00000556432 RSF1Q96T23 1441 aaPredicted RBP26.56■■□□□ 1.84
ACTN1-219ENST00000556432 RIMBP3CA6NJZ7 1639 aa26.54■■□□□ 1.84
ACTN1-219ENST00000556432 RIMBP3BA6NNM3 1639 aa26.54■■□□□ 1.84
ACTN1-219ENST00000556432 RIMBP3Q9UFD9 1639 aa26.54■■□□□ 1.84
ACTN1-219ENST00000556432 ZNF608Q9ULD9 1512 aaPredicted RBP26.44■■□□□ 1.82
ACTN1-219ENST00000556432 IFT140Q96RY7 1462 aa26.44■■□□□ 1.82
ACTN1-219ENST00000556432 PRDM2Q13029 1718 aa26.42■■□□□ 1.82
ACTN1-219ENST00000556432 ARHGEF11O15085 1522 aa26.42■■□□□ 1.82
ACTN1-219ENST00000556432 TOPBP1Q92547 1522 aa26.33■■□□□ 1.81
ACTN1-219ENST00000556432 CYB5RLQ6IPT4 315 aa26.31■■□□□ 1.8
ACTN1-219ENST00000556432 CCDC88BA6NC98 1476 aa26.3■■□□□ 1.8
ACTN1-219ENST00000556432 EIF4G3O43432 1585 aaKnown RBP26.28■■□□□ 1.8
ACTN1-219ENST00000556432 ABCC8Q09428 1581 aa26.22■■□□□ 1.79
ACTN1-219ENST00000556432 TRHP20396 242 aaPredicted RBP26.22■■□□□ 1.79
ACTN1-219ENST00000556432 FBLN2P98095 1184 aa26.19■■□□□ 1.78
ACTN1-219ENST00000556432 DNMBPQ6XZF7 1577 aa26.18■■□□□ 1.78
ACTN1-219ENST00000556432 AQRO60306 1485 aaKnown RBP eCLIP26.17■■□□□ 1.787e-7■■■■□ 19.4
ACTN1-219ENST00000556432 CHD1O14646 1710 aa26.17■■□□□ 1.78
ACTN1-219ENST00000556432 ARAP1Q96P48 1450 aa26.12■■□□□ 1.77
ACTN1-219ENST00000556432 TARBP1Q13395 1621 aaKnown RBP26.09■■□□□ 1.77
ACTN1-219ENST00000556432 POLA1P09884 1462 aaPredicted RBP26.02■■□□□ 1.76
ACTN1-219ENST00000556432 RAD54L2Q9Y4B4 1467 aa25.96■■□□□ 1.75
ACTN1-219ENST00000556432 TDRD9Q8NDG6 1382 aaKnown RBP25.95■■□□□ 1.74
ACTN1-219ENST00000556432 SOGA1O94964 1423 aa25.92■■□□□ 1.74
ACTN1-219ENST00000556432 SNAPC4Q5SXM2 1469 aa25.9■■□□□ 1.74
ACTN1-219ENST00000556432 CHMP7Q8WUX9 453 aaPredicted RBP25.86■■□□□ 1.73
ACTN1-219ENST00000556432 AEBP2Q6ZN18 517 aaPredicted RBP25.84■■□□□ 1.73
ACTN1-219ENST00000556432 CLASP1Q7Z460 1538 aa25.83■■□□□ 1.72
ACTN1-219ENST00000556432 SYNJ1O43426 1573 aa25.82■■□□□ 1.72
ACTN1-219ENST00000556432 FGD5Q6ZNL6 1462 aa25.81■■□□□ 1.72
ACTN1-219ENST00000556432 WDR97A6NE52 1622 aa25.78■■□□□ 1.72
ACTN1-219ENST00000556432 MAGI1Q96QZ7 1491 aaPredicted RBP25.78■■□□□ 1.72
ACTN1-219ENST00000556432 GRIN2BQ13224 1484 aa25.74■■□□□ 1.71
ACTN1-219ENST00000556432 SYNJ2O15056 1496 aa25.7■■□□□ 1.7
ACTN1-219ENST00000556432 CUX1P39880 1505 aa25.69■■□□□ 1.7
ACTN1-219ENST00000556432 GAPVD1Q14C86 1478 aa25.64■■□□□ 1.69
ACTN1-219ENST00000556432 PBRM1Q86U86 1689 aa25.59■■□□□ 1.69
ACTN1-219ENST00000556432 ABCA5Q8WWZ7 1642 aa25.46■■□□□ 1.67
ACTN1-219ENST00000556432 ABCA10Q8WWZ4 1543 aa25.46■■□□□ 1.67
ACTN1-219ENST00000556432 ERCC6L2Q5T890 1561 aa25.42■■□□□ 1.66
ACTN1-219ENST00000556432 GRIN2AQ12879 1464 aa25.4■■□□□ 1.66
ACTN1-219ENST00000556432 CEP170Q5SW79 1584 aa25.35■■□□□ 1.65
ACTN1-219ENST00000556432 ADAMTS12P58397 1594 aa25.32■■□□□ 1.64
ACTN1-219ENST00000556432 WRNQ14191 1432 aaPredicted RBP eCLIP25.31■■□□□ 1.64
ACTN1-219ENST00000556432 NUP160Q12769 1436 aa25.3■■□□□ 1.64
ACTN1-219ENST00000556432 FHAD1B1AJZ9 1412 aa25.24■■□□□ 1.63
ACTN1-219ENST00000556432 SHROOM2Q13796 1616 aa25.23■■□□□ 1.63
ACTN1-219ENST00000556432 SUPT5HO00267 1087 aaKnown RBP25.16■■□□□ 1.62
ACTN1-219ENST00000556432 PRG4Q92954 1404 aaPredicted RBP25.16■■□□□ 1.62
ACTN1-219ENST00000556432 KIF13AQ9H1H9 1805 aa25.16■■□□□ 1.62
ACTN1-219ENST00000556432 ERICH3Q5RHP9 1530 aa25.13■■□□□ 1.61
ACTN1-219ENST00000556432 TOP2BQ02880 1626 aa25.13■■□□□ 1.61
ACTN1-219ENST00000556432 BIVM-ERCC5R4GMW8 1640 aa25.12■■□□□ 1.61
ACTN1-219ENST00000556432 FAM69CQ0P6D2 419 aa25.08■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms