RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 NISCHQ9Y2I1 1504 aa37.6■■■■□ 3.61
CLN3-236ENST00000568558 CCDC180Q9P1Z9 1646 aa33.83■■■■□ 3.01
CLN3-236ENST00000568558 ABCC9O60706 1549 aa33.69■■■□□ 2.98
CLN3-236ENST00000568558 RB1CC1Q8TDY2 1594 aa32.13■■■□□ 2.73
CLN3-236ENST00000568558 NACADO15069 1562 aa31.91■■■□□ 2.7
CLN3-236ENST00000568558 DCAF8L2P0C7V8 631 aa31.59■■■□□ 2.65
CLN3-236ENST00000568558 UNC13AQ9UPW8 1703 aa31.53■■■□□ 2.64
CLN3-236ENST00000568558 DNAJC5BQ9UF47 199 aa31.53■■■□□ 2.64
CLN3-236ENST00000568558 MYO15BQ96JP2 1530 aa31.48■■■□□ 2.63
CLN3-236ENST00000568558 PABPN1Q86U42 306 aaKnown RBP eCLIP31.29■■■□□ 2.6
CLN3-236ENST00000568558 BICRAQ9NZM4 1560 aa31.22■■■□□ 2.59
CLN3-236ENST00000568558 ZCCHC6Q5VYS8 1495 aaKnown RBP31.19■■■□□ 2.58
CLN3-236ENST00000568558 DCAF1Q9Y4B6 1507 aa31.09■■■□□ 2.57
CLN3-236ENST00000568558 SHROOM4Q9ULL8 1493 aa30.78■■■□□ 2.52
CLN3-236ENST00000568558 SCRIBQ14160 1630 aa30.76■■■□□ 2.52
CLN3-236ENST00000568558 CC2D2AQ9P2K1 1620 aa30.49■■■□□ 2.47
CLN3-236ENST00000568558 EIF4G1Q04637 1599 aaKnown RBP30.43■■■□□ 2.46
CLN3-236ENST00000568558 CECR2Q9BXF3 1484 aa30.35■■■□□ 2.45
CLN3-236ENST00000568558 NCAPD3P42695 1498 aa29.42■■■□□ 2.3
CLN3-236ENST00000568558 SMARCA4P51532 1647 aa29.37■■■□□ 2.29
CLN3-236ENST00000568558 ATAD2BQ9ULI0 1458 aa29.34■■■□□ 2.29
CLN3-236ENST00000568558 SMARCA2P51531 1590 aa29.28■■■□□ 2.28
CLN3-236ENST00000568558 HMGXB3Q12766 1538 aa29.25■■■□□ 2.27
CLN3-236ENST00000568558 BAZ1AQ9NRL2 1556 aaPredicted RBP29.2■■■□□ 2.26
CLN3-236ENST00000568558 PEG3Q9GZU2 1588 aa29.09■■■□□ 2.25
CLN3-236ENST00000568558 ERCC6Q03468 1493 aa29.08■■■□□ 2.25
CLN3-236ENST00000568558 CUX2O14529 1486 aa29.05■■■□□ 2.24
CLN3-236ENST00000568558 BAZ1BQ9UIG0 1483 aaKnown RBP29.05■■■□□ 2.24
CLN3-236ENST00000568558 MROH2BQ7Z745 1585 aa28.96■■■□□ 2.23
CLN3-236ENST00000568558 NESP48681 1621 aa28.96■■■□□ 2.23
CLN3-236ENST00000568558 DNAJC5Q9H3Z4 198 aa28.95■■■□□ 2.22
CLN3-236ENST00000568558 LAMC3Q9Y6N6 1575 aa28.81■■■□□ 2.2
CLN3-236ENST00000568558 THOC2Q8NI27 1593 aaKnown RBP28.74■■■□□ 2.19
CLN3-236ENST00000568558 KIF21AQ7Z4S6 1674 aa28.69■■■□□ 2.18
CLN3-236ENST00000568558 WIZO95785 1651 aa28.67■■■□□ 2.18
CLN3-236ENST00000568558 PDS5BQ9NTI5 1447 aa28.57■■■□□ 2.16
CLN3-236ENST00000568558 CADPSQ9ULU8 1353 aa28.5■■■□□ 2.15
CLN3-236ENST00000568558 MRC2Q9UBG0 1479 aa28.35■■■□□ 2.13
CLN3-236ENST00000568558 RSF1Q96T23 1441 aaPredicted RBP28.34■■■□□ 2.13
CLN3-236ENST00000568558 WDR62O43379 1518 aa28.32■■■□□ 2.12
CLN3-236ENST00000568558 TOP2AP11388 1531 aaKnown RBP28.28■■■□□ 2.12
CLN3-236ENST00000568558 CEP164Q9UPV0 1460 aa28.25■■■□□ 2.11
CLN3-236ENST00000568558 CFTRP13569 1480 aa28.21■■■□□ 2.11
CLN3-236ENST00000568558 FANCD2Q9BXW9 1451 aa28.21■■■□□ 2.11
CLN3-236ENST00000568558 PRDM2Q13029 1718 aa28.1■■■□□ 2.09
CLN3-236ENST00000568558 URB2Q14146 1524 aaKnown RBP27.98■■■□□ 2.07
CLN3-236ENST00000568558 CCDC88BA6NC98 1476 aa27.92■■■□□ 2.06
CLN3-236ENST00000568558 TOPBP1Q92547 1522 aa27.69■■■□□ 2.02
CLN3-236ENST00000568558 IFT140Q96RY7 1462 aa27.67■■■□□ 2.02
CLN3-236ENST00000568558 TRIM41Q8WV44 630 aa27.66■■■□□ 2.02
CLN3-236ENST00000568558 OSCARQ8IYS5 282 aa27.64■■■□□ 2.02
CLN3-236ENST00000568558 ZNF608Q9ULD9 1512 aaPredicted RBP27.62■■■□□ 2.01
CLN3-236ENST00000568558 ABCC8Q09428 1581 aa27.62■■■□□ 2.01
CLN3-236ENST00000568558 DNMBPQ6XZF7 1577 aa27.61■■■□□ 2.01
CLN3-236ENST00000568558 EIF4G3O43432 1585 aaKnown RBP27.55■■■□□ 2
CLN3-236ENST00000568558 TARBP1Q13395 1621 aaKnown RBP27.49■■□□□ 1.99
CLN3-236ENST00000568558 RIMBP3CA6NJZ7 1639 aa27.41■■□□□ 1.98
CLN3-236ENST00000568558 RIMBP3BA6NNM3 1639 aa27.41■■□□□ 1.98
CLN3-236ENST00000568558 RIMBP3Q9UFD9 1639 aa27.41■■□□□ 1.98
CLN3-236ENST00000568558 POLA1P09884 1462 aaPredicted RBP27.4■■□□□ 1.98
CLN3-236ENST00000568558 CHD1O14646 1710 aa27.38■■□□□ 1.97
CLN3-236ENST00000568558 AQRO60306 1485 aaKnown RBP eCLIP27.35■■□□□ 1.976e-6■■■■□ 25.1
CLN3-236ENST00000568558 ARHGEF11O15085 1522 aa27.3■■□□□ 1.96
CLN3-236ENST00000568558 RAD54L2Q9Y4B4 1467 aa27.28■■□□□ 1.96
CLN3-236ENST00000568558 SOGA1O94964 1423 aa27.24■■□□□ 1.95
CLN3-236ENST00000568558 FGD5Q6ZNL6 1462 aa27.23■■□□□ 1.95
CLN3-236ENST00000568558 WDR97A6NE52 1622 aa27.23■■□□□ 1.95
CLN3-236ENST00000568558 CUX1P39880 1505 aa27.22■■□□□ 1.95
CLN3-236ENST00000568558 TDRD9Q8NDG6 1382 aaKnown RBP27.16■■□□□ 1.94
CLN3-236ENST00000568558 FBLN2P98095 1184 aa27.1■■□□□ 1.93
CLN3-236ENST00000568558 SNAPC4Q5SXM2 1469 aa27.1■■□□□ 1.93
CLN3-236ENST00000568558 MAGI1Q96QZ7 1491 aaPredicted RBP27.04■■□□□ 1.92
CLN3-236ENST00000568558 PBRM1Q86U86 1689 aa27.04■■□□□ 1.92
CLN3-236ENST00000568558 GRIN2BQ13224 1484 aa27.02■■□□□ 1.92
CLN3-236ENST00000568558 ARAP1Q96P48 1450 aa27.02■■□□□ 1.92
CLN3-236ENST00000568558 SUPT5HO00267 1087 aaKnown RBP27.02■■□□□ 1.92
CLN3-236ENST00000568558 CLASP1Q7Z460 1538 aa27■■□□□ 1.91
CLN3-236ENST00000568558 CYB5RLQ6IPT4 315 aa26.99■■□□□ 1.91
CLN3-236ENST00000568558 SYNJ1O43426 1573 aa26.98■■□□□ 1.91
CLN3-236ENST00000568558 ABCA5Q8WWZ7 1642 aa26.94■■□□□ 1.9
CLN3-236ENST00000568558 SYNJ2O15056 1496 aa26.94■■□□□ 1.9
CLN3-236ENST00000568558 ABCA10Q8WWZ4 1543 aa26.93■■□□□ 1.9
CLN3-236ENST00000568558 GAPVD1Q14C86 1478 aa26.93■■□□□ 1.9
CLN3-236ENST00000568558 CHMP7Q8WUX9 453 aaPredicted RBP26.92■■□□□ 1.9
CLN3-236ENST00000568558 BIVM-ERCC5R4GMW8 1640 aa26.86■■□□□ 1.89
CLN3-236ENST00000568558 TOP2BQ02880 1626 aa26.82■■□□□ 1.88
CLN3-236ENST00000568558 WRNQ14191 1432 aaPredicted RBP eCLIP26.78■■□□□ 1.88
CLN3-236ENST00000568558 ADAMTS12P58397 1594 aa26.73■■□□□ 1.87
CLN3-236ENST00000568558 GRIN2AQ12879 1464 aa26.69■■□□□ 1.86
CLN3-236ENST00000568558 TRHP20396 242 aaPredicted RBP26.68■■□□□ 1.86
CLN3-236ENST00000568558 CEP170Q5SW79 1584 aa26.63■■□□□ 1.85
CLN3-236ENST00000568558 ERICH3Q5RHP9 1530 aa26.61■■□□□ 1.85
CLN3-236ENST00000568558 NUP160Q12769 1436 aa26.6■■□□□ 1.85
CLN3-236ENST00000568558 FHAD1B1AJZ9 1412 aa26.58■■□□□ 1.85
CLN3-236ENST00000568558 ERCC6L2Q5T890 1561 aa26.57■■□□□ 1.84
CLN3-236ENST00000568558 SHROOM2Q13796 1616 aa26.55■■□□□ 1.84
CLN3-236ENST00000568558 RUSC2Q8N2Y8 1516 aa26.36■■□□□ 1.81
CLN3-236ENST00000568558 PRG4Q92954 1404 aaPredicted RBP26.31■■□□□ 1.8
CLN3-236ENST00000568558 CUL7Q14999 1698 aa26.27■■□□□ 1.8
CLN3-236ENST00000568558 JPH4Q96JJ6 628 aa26.25■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 162.2 ms