RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 NISCHQ9Y2I1 1504 aa34.37■■■■□ 3.09
CLN3-235ENST00000568497 ABCC9O60706 1549 aa31.97■■■□□ 2.71
CLN3-235ENST00000568497 CCDC180Q9P1Z9 1646 aa31.14■■■□□ 2.58
CLN3-235ENST00000568497 DNAJC5BQ9UF47 199 aa30.6■■■□□ 2.49
CLN3-235ENST00000568497 RB1CC1Q8TDY2 1594 aa30.04■■■□□ 2.4
CLN3-235ENST00000568497 PABPN1Q86U42 306 aaKnown RBP eCLIP29.64■■■□□ 2.34
CLN3-235ENST00000568497 NACADO15069 1562 aa29.63■■■□□ 2.33
CLN3-235ENST00000568497 DCAF8L2P0C7V8 631 aa29.44■■■□□ 2.3
CLN3-235ENST00000568497 UNC13AQ9UPW8 1703 aa29.35■■■□□ 2.29
CLN3-235ENST00000568497 BICRAQ9NZM4 1560 aa29.14■■■□□ 2.26
CLN3-235ENST00000568497 MYO15BQ96JP2 1530 aa29.04■■■□□ 2.24
CLN3-235ENST00000568497 CECR2Q9BXF3 1484 aa28.86■■■□□ 2.21
CLN3-235ENST00000568497 CC2D2AQ9P2K1 1620 aa28.8■■■□□ 2.2
CLN3-235ENST00000568497 SHROOM4Q9ULL8 1493 aa28.73■■■□□ 2.19
CLN3-235ENST00000568497 DNAJC5Q9H3Z4 198 aa28.67■■■□□ 2.18
CLN3-235ENST00000568497 EIF4G1Q04637 1599 aaKnown RBP28.54■■■□□ 2.16
CLN3-235ENST00000568497 SCRIBQ14160 1630 aa28.4■■■□□ 2.14
CLN3-235ENST00000568497 DCAF1Q9Y4B6 1507 aa28.39■■■□□ 2.14
CLN3-235ENST00000568497 ZCCHC6Q5VYS8 1495 aaKnown RBP28.34■■■□□ 2.13
CLN3-235ENST00000568497 CUX2O14529 1486 aa27.82■■■□□ 2.04
CLN3-235ENST00000568497 ERCC6Q03468 1493 aa27.7■■■□□ 2.02
CLN3-235ENST00000568497 NCAPD3P42695 1498 aa27.38■■□□□ 1.97
CLN3-235ENST00000568497 TRIM41Q8WV44 630 aa27.25■■□□□ 1.95
CLN3-235ENST00000568497 NESP48681 1621 aa27.22■■□□□ 1.95
CLN3-235ENST00000568497 ATAD2BQ9ULI0 1458 aa27.17■■□□□ 1.94
CLN3-235ENST00000568497 HMGXB3Q12766 1538 aa27.09■■□□□ 1.93
CLN3-235ENST00000568497 THOC2Q8NI27 1593 aaKnown RBP27.08■■□□□ 1.93
CLN3-235ENST00000568497 SMARCA2P51531 1590 aa27.05■■□□□ 1.92
CLN3-235ENST00000568497 SMARCA4P51532 1647 aa26.95■■□□□ 1.91
CLN3-235ENST00000568497 BAZ1BQ9UIG0 1483 aaKnown RBP26.9■■□□□ 1.9
CLN3-235ENST00000568497 LAMC3Q9Y6N6 1575 aa26.87■■□□□ 1.89
CLN3-235ENST00000568497 KIF21AQ7Z4S6 1674 aa26.85■■□□□ 1.89
CLN3-235ENST00000568497 PDS5BQ9NTI5 1447 aa26.75■■□□□ 1.87
CLN3-235ENST00000568497 PEG3Q9GZU2 1588 aa26.73■■□□□ 1.87
CLN3-235ENST00000568497 BAZ1AQ9NRL2 1556 aaPredicted RBP26.73■■□□□ 1.87
CLN3-235ENST00000568497 MRC2Q9UBG0 1479 aa26.58■■□□□ 1.85
CLN3-235ENST00000568497 WDR62O43379 1518 aa26.52■■□□□ 1.84
CLN3-235ENST00000568497 CADPSQ9ULU8 1353 aa26.49■■□□□ 1.83
CLN3-235ENST00000568497 MROH2BQ7Z745 1585 aa26.45■■□□□ 1.82
CLN3-235ENST00000568497 OSCARQ8IYS5 282 aa26.43■■□□□ 1.82
CLN3-235ENST00000568497 CEP164Q9UPV0 1460 aa26.34■■□□□ 1.81
CLN3-235ENST00000568497 FANCD2Q9BXW9 1451 aa26.22■■□□□ 1.79
CLN3-235ENST00000568497 RIMBP3CA6NJZ7 1639 aa26.2■■□□□ 1.78
CLN3-235ENST00000568497 RIMBP3BA6NNM3 1639 aa26.2■■□□□ 1.78
CLN3-235ENST00000568497 RIMBP3Q9UFD9 1639 aa26.2■■□□□ 1.78
CLN3-235ENST00000568497 WIZO95785 1651 aa26.11■■□□□ 1.77
CLN3-235ENST00000568497 CFTRP13569 1480 aa26.04■■□□□ 1.76
CLN3-235ENST00000568497 ARHGEF11O15085 1522 aa26.04■■□□□ 1.76
CLN3-235ENST00000568497 URB2Q14146 1524 aaKnown RBP26.04■■□□□ 1.76
CLN3-235ENST00000568497 TRHP20396 242 aaPredicted RBP25.95■■□□□ 1.74
CLN3-235ENST00000568497 CYB5RLQ6IPT4 315 aa25.92■■□□□ 1.74
CLN3-235ENST00000568497 ZNF608Q9ULD9 1512 aaPredicted RBP25.85■■□□□ 1.73
CLN3-235ENST00000568497 IFT140Q96RY7 1462 aa25.8■■□□□ 1.72
CLN3-235ENST00000568497 AEBP2Q6ZN18 517 aaPredicted RBP25.79■■□□□ 1.72
CLN3-235ENST00000568497 TOP2AP11388 1531 aaKnown RBP25.74■■□□□ 1.71
CLN3-235ENST00000568497 PRDM2Q13029 1718 aa25.72■■□□□ 1.71
CLN3-235ENST00000568497 ARAP1Q96P48 1450 aa25.71■■□□□ 1.71
CLN3-235ENST00000568497 EIF4G3O43432 1585 aaKnown RBP25.69■■□□□ 1.7
CLN3-235ENST00000568497 CHD1O14646 1710 aa25.67■■□□□ 1.7
CLN3-235ENST00000568497 RSF1Q96T23 1441 aaPredicted RBP25.67■■□□□ 1.7
CLN3-235ENST00000568497 TOPBP1Q92547 1522 aa25.62■■□□□ 1.69
CLN3-235ENST00000568497 FBLN2P98095 1184 aa25.61■■□□□ 1.69
CLN3-235ENST00000568497 ABCC8Q09428 1581 aa25.53■■□□□ 1.68
CLN3-235ENST00000568497 AQRO60306 1485 aaKnown RBP eCLIP25.53■■□□□ 1.686e-6■■■■□ 25.1
CLN3-235ENST00000568497 DNMBPQ6XZF7 1577 aa25.46■■□□□ 1.67
CLN3-235ENST00000568497 CCDC88BA6NC98 1476 aa25.46■■□□□ 1.67
CLN3-235ENST00000568497 TARBP1Q13395 1621 aaKnown RBP25.43■■□□□ 1.66
CLN3-235ENST00000568497 POLA1P09884 1462 aaPredicted RBP25.31■■□□□ 1.64
CLN3-235ENST00000568497 CLASP1Q7Z460 1538 aa25.29■■□□□ 1.64
CLN3-235ENST00000568497 TDRD9Q8NDG6 1382 aaKnown RBP25.26■■□□□ 1.63
CLN3-235ENST00000568497 SNAPC4Q5SXM2 1469 aa25.26■■□□□ 1.63
CLN3-235ENST00000568497 RAD54L2Q9Y4B4 1467 aa25.26■■□□□ 1.63
CLN3-235ENST00000568497 SYNJ1O43426 1573 aa25.26■■□□□ 1.63
CLN3-235ENST00000568497 CHMP7Q8WUX9 453 aaPredicted RBP25.24■■□□□ 1.63
CLN3-235ENST00000568497 SUPT5HO00267 1087 aaKnown RBP25.2■■□□□ 1.62
CLN3-235ENST00000568497 SOGA1O94964 1423 aa25.19■■□□□ 1.62
CLN3-235ENST00000568497 WDR97A6NE52 1622 aa25.15■■□□□ 1.62
CLN3-235ENST00000568497 GAPVD1Q14C86 1478 aa25.13■■□□□ 1.61
CLN3-235ENST00000568497 MAGI1Q96QZ7 1491 aaPredicted RBP25.13■■□□□ 1.61
CLN3-235ENST00000568497 SYNJ2O15056 1496 aa25.07■■□□□ 1.6
CLN3-235ENST00000568497 GRIN2BQ13224 1484 aa25.06■■□□□ 1.6
CLN3-235ENST00000568497 FGD5Q6ZNL6 1462 aa25.06■■□□□ 1.6
CLN3-235ENST00000568497 PBRM1Q86U86 1689 aa24.94■■□□□ 1.58
CLN3-235ENST00000568497 CUX1P39880 1505 aa24.89■■□□□ 1.57
CLN3-235ENST00000568497 ERCC6L2Q5T890 1561 aa24.87■■□□□ 1.57
CLN3-235ENST00000568497 KIF13AQ9H1H9 1805 aa24.78■■□□□ 1.56
CLN3-235ENST00000568497 CEP170Q5SW79 1584 aa24.76■■□□□ 1.55
CLN3-235ENST00000568497 GRIN2AQ12879 1464 aa24.74■■□□□ 1.55
CLN3-235ENST00000568497 ABCA10Q8WWZ4 1543 aa24.74■■□□□ 1.55
CLN3-235ENST00000568497 ABCA5Q8WWZ7 1642 aa24.74■■□□□ 1.55
CLN3-235ENST00000568497 ILDR1Q86SU0 546 aaPredicted RBP24.68■■□□□ 1.54
CLN3-235ENST00000568497 NUP160Q12769 1436 aa24.68■■□□□ 1.54
CLN3-235ENST00000568497 ADAMTS12P58397 1594 aa24.63■■□□□ 1.53
CLN3-235ENST00000568497 SHROOM2Q13796 1616 aa24.63■■□□□ 1.53
CLN3-235ENST00000568497 FAM69CQ0P6D2 419 aa24.6■■□□□ 1.53
CLN3-235ENST00000568497 KDM4FA0A1W2PPD8 638 aa24.56■■□□□ 1.52
CLN3-235ENST00000568497 PRG4Q92954 1404 aaPredicted RBP24.53■■□□□ 1.52
CLN3-235ENST00000568497 ABCC10Q5T3U5 1492 aa24.53■■□□□ 1.52
CLN3-235ENST00000568497 FHAD1B1AJZ9 1412 aa24.52■■□□□ 1.52
CLN3-235ENST00000568497 KDM6BO15054 1643 aa24.52■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms