RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 NISCHQ9Y2I1 1504 aa40.1■■■■■ 4.01
CLN3-229ENST00000567963 CCDC180Q9P1Z9 1646 aa35.91■■■■□ 3.34
CLN3-229ENST00000567963 ABCC9O60706 1549 aa35.79■■■■□ 3.32
CLN3-229ENST00000567963 RB1CC1Q8TDY2 1594 aa34.13■■■■□ 3.05
CLN3-229ENST00000567963 NACADO15069 1562 aa33.93■■■■□ 3.02
CLN3-229ENST00000567963 DCAF8L2P0C7V8 631 aa33.83■■■■□ 3.01
CLN3-229ENST00000567963 MYO15BQ96JP2 1530 aa33.53■■■□□ 2.96
CLN3-229ENST00000567963 DNAJC5BQ9UF47 199 aa33.5■■■□□ 2.95
CLN3-229ENST00000567963 PABPN1Q86U42 306 aaKnown RBP eCLIP33.37■■■□□ 2.93
CLN3-229ENST00000567963 UNC13AQ9UPW8 1703 aa33.36■■■□□ 2.93
CLN3-229ENST00000567963 ZCCHC6Q5VYS8 1495 aaKnown RBP33.25■■■□□ 2.91
CLN3-229ENST00000567963 DCAF1Q9Y4B6 1507 aa33.14■■■□□ 2.9
CLN3-229ENST00000567963 BICRAQ9NZM4 1560 aa33.13■■■□□ 2.89
CLN3-229ENST00000567963 SCRIBQ14160 1630 aa32.72■■■□□ 2.83
CLN3-229ENST00000567963 SHROOM4Q9ULL8 1493 aa32.69■■■□□ 2.82
CLN3-229ENST00000567963 CC2D2AQ9P2K1 1620 aa32.34■■■□□ 2.77
CLN3-229ENST00000567963 EIF4G1Q04637 1599 aaKnown RBP32.31■■■□□ 2.76
CLN3-229ENST00000567963 CECR2Q9BXF3 1484 aa32.23■■■□□ 2.75
CLN3-229ENST00000567963 NCAPD3P42695 1498 aa31.35■■■□□ 2.61
CLN3-229ENST00000567963 ATAD2BQ9ULI0 1458 aa31.26■■■□□ 2.59
CLN3-229ENST00000567963 SMARCA4P51532 1647 aa31.24■■■□□ 2.59
CLN3-229ENST00000567963 SMARCA2P51531 1590 aa31.17■■■□□ 2.58
CLN3-229ENST00000567963 BAZ1AQ9NRL2 1556 aaPredicted RBP31.12■■■□□ 2.57
CLN3-229ENST00000567963 HMGXB3Q12766 1538 aa31.1■■■□□ 2.57
CLN3-229ENST00000567963 PEG3Q9GZU2 1588 aa30.95■■■□□ 2.55
CLN3-229ENST00000567963 BAZ1BQ9UIG0 1483 aaKnown RBP30.95■■■□□ 2.54
CLN3-229ENST00000567963 MROH2BQ7Z745 1585 aa30.9■■■□□ 2.54
CLN3-229ENST00000567963 ERCC6Q03468 1493 aa30.89■■■□□ 2.54
CLN3-229ENST00000567963 CUX2O14529 1486 aa30.79■■■□□ 2.52
CLN3-229ENST00000567963 NESP48681 1621 aa30.79■■■□□ 2.52
CLN3-229ENST00000567963 DNAJC5Q9H3Z4 198 aa30.67■■■□□ 2.5
CLN3-229ENST00000567963 LAMC3Q9Y6N6 1575 aa30.6■■■□□ 2.49
CLN3-229ENST00000567963 WIZO95785 1651 aa30.54■■■□□ 2.48
CLN3-229ENST00000567963 THOC2Q8NI27 1593 aaKnown RBP30.43■■■□□ 2.46
CLN3-229ENST00000567963 PDS5BQ9NTI5 1447 aa30.43■■■□□ 2.46
CLN3-229ENST00000567963 CADPSQ9ULU8 1353 aa30.4■■■□□ 2.46
CLN3-229ENST00000567963 KIF21AQ7Z4S6 1674 aa30.39■■■□□ 2.45
CLN3-229ENST00000567963 RSF1Q96T23 1441 aaPredicted RBP30.33■■■□□ 2.45
CLN3-229ENST00000567963 TOP2AP11388 1531 aaKnown RBP30.14■■■□□ 2.42
CLN3-229ENST00000567963 MRC2Q9UBG0 1479 aa30.13■■■□□ 2.41
CLN3-229ENST00000567963 CFTRP13569 1480 aa30.07■■■□□ 2.41
CLN3-229ENST00000567963 WDR62O43379 1518 aa30.06■■■□□ 2.4
CLN3-229ENST00000567963 CEP164Q9UPV0 1460 aa30.04■■■□□ 2.4
CLN3-229ENST00000567963 FANCD2Q9BXW9 1451 aa30.04■■■□□ 2.4
CLN3-229ENST00000567963 CCDC88BA6NC98 1476 aa29.84■■■□□ 2.37
CLN3-229ENST00000567963 URB2Q14146 1524 aaKnown RBP29.78■■■□□ 2.36
CLN3-229ENST00000567963 PRDM2Q13029 1718 aa29.75■■■□□ 2.35
CLN3-229ENST00000567963 TOPBP1Q92547 1522 aa29.48■■■□□ 2.31
CLN3-229ENST00000567963 OSCARQ8IYS5 282 aa29.46■■■□□ 2.31
CLN3-229ENST00000567963 IFT140Q96RY7 1462 aa29.45■■■□□ 2.3
CLN3-229ENST00000567963 ABCC8Q09428 1581 aa29.45■■■□□ 2.3
CLN3-229ENST00000567963 ZNF608Q9ULD9 1512 aaPredicted RBP29.39■■■□□ 2.3
CLN3-229ENST00000567963 DNMBPQ6XZF7 1577 aa29.38■■■□□ 2.29
CLN3-229ENST00000567963 TRIM41Q8WV44 630 aa29.36■■■□□ 2.29
CLN3-229ENST00000567963 EIF4G3O43432 1585 aaKnown RBP29.21■■■□□ 2.27
CLN3-229ENST00000567963 TARBP1Q13395 1621 aaKnown RBP29.21■■■□□ 2.27
CLN3-229ENST00000567963 POLA1P09884 1462 aaPredicted RBP29.19■■■□□ 2.26
CLN3-229ENST00000567963 AQRO60306 1485 aaKnown RBP eCLIP29.16■■■□□ 2.266e-6■■■■□ 25.1
CLN3-229ENST00000567963 SUPT5HO00267 1087 aaKnown RBP29.1■■■□□ 2.25
CLN3-229ENST00000567963 RAD54L2Q9Y4B4 1467 aa29.09■■■□□ 2.25
CLN3-229ENST00000567963 SOGA1O94964 1423 aa29.08■■■□□ 2.25
CLN3-229ENST00000567963 FGD5Q6ZNL6 1462 aa29.02■■■□□ 2.24
CLN3-229ENST00000567963 CUX1P39880 1505 aa29.02■■■□□ 2.24
CLN3-229ENST00000567963 RIMBP3CA6NJZ7 1639 aa29.01■■■□□ 2.23
CLN3-229ENST00000567963 RIMBP3BA6NNM3 1639 aa29.01■■■□□ 2.23
CLN3-229ENST00000567963 RIMBP3Q9UFD9 1639 aa29.01■■■□□ 2.23
CLN3-229ENST00000567963 TDRD9Q8NDG6 1382 aaKnown RBP29■■■□□ 2.23
CLN3-229ENST00000567963 CHD1O14646 1710 aa28.97■■■□□ 2.23
CLN3-229ENST00000567963 FBLN2P98095 1184 aa28.95■■■□□ 2.22
CLN3-229ENST00000567963 ARHGEF11O15085 1522 aa28.94■■■□□ 2.22
CLN3-229ENST00000567963 WDR97A6NE52 1622 aa28.91■■■□□ 2.22
CLN3-229ENST00000567963 SNAPC4Q5SXM2 1469 aa28.83■■■□□ 2.21
CLN3-229ENST00000567963 GRIN2BQ13224 1484 aa28.79■■■□□ 2.2
CLN3-229ENST00000567963 MAGI1Q96QZ7 1491 aaPredicted RBP28.77■■■□□ 2.2
CLN3-229ENST00000567963 CHMP7Q8WUX9 453 aaPredicted RBP28.77■■■□□ 2.2
CLN3-229ENST00000567963 CYB5RLQ6IPT4 315 aa28.75■■■□□ 2.19
CLN3-229ENST00000567963 GAPVD1Q14C86 1478 aa28.71■■■□□ 2.19
CLN3-229ENST00000567963 ABCA10Q8WWZ4 1543 aa28.71■■■□□ 2.19
CLN3-229ENST00000567963 SYNJ2O15056 1496 aa28.69■■■□□ 2.18
CLN3-229ENST00000567963 PBRM1Q86U86 1689 aa28.67■■■□□ 2.18
CLN3-229ENST00000567963 CLASP1Q7Z460 1538 aa28.66■■■□□ 2.18
CLN3-229ENST00000567963 ARAP1Q96P48 1450 aa28.66■■■□□ 2.18
CLN3-229ENST00000567963 SYNJ1O43426 1573 aa28.65■■■□□ 2.18
CLN3-229ENST00000567963 ABCA5Q8WWZ7 1642 aa28.63■■■□□ 2.17
CLN3-229ENST00000567963 WRNQ14191 1432 aaPredicted RBP eCLIP28.62■■■□□ 2.17
CLN3-229ENST00000567963 TOP2BQ02880 1626 aa28.59■■■□□ 2.17
CLN3-229ENST00000567963 BIVM-ERCC5R4GMW8 1640 aa28.59■■■□□ 2.17
CLN3-229ENST00000567963 GRIN2AQ12879 1464 aa28.42■■■□□ 2.14
CLN3-229ENST00000567963 ADAMTS12P58397 1594 aa28.4■■■□□ 2.14
CLN3-229ENST00000567963 TRHP20396 242 aaPredicted RBP28.38■■■□□ 2.13
CLN3-229ENST00000567963 FHAD1B1AJZ9 1412 aa28.35■■■□□ 2.13
CLN3-229ENST00000567963 ERICH3Q5RHP9 1530 aa28.35■■■□□ 2.13
CLN3-229ENST00000567963 NUP160Q12769 1436 aa28.33■■■□□ 2.13
CLN3-229ENST00000567963 CEP170Q5SW79 1584 aa28.31■■■□□ 2.12
CLN3-229ENST00000567963 ERCC6L2Q5T890 1561 aa28.22■■■□□ 2.11
CLN3-229ENST00000567963 SHROOM2Q13796 1616 aa28.17■■■□□ 2.1
CLN3-229ENST00000567963 JPH4Q96JJ6 628 aa28.08■■■□□ 2.09
CLN3-229ENST00000567963 IGF1RP08069 1367 aa28.05■■■□□ 2.08
CLN3-229ENST00000567963 KIF27Q86VH2 1401 aa28.04■■■□□ 2.08
CLN3-229ENST00000567963 PRG4Q92954 1404 aaPredicted RBP28.04■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 139.2 ms