RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 NISCHQ9Y2I1 1504 aa43.3■■■■■ 4.52
CLN3-239ENST00000628023 CCDC180Q9P1Z9 1646 aa38.79■■■■□ 3.8
CLN3-239ENST00000628023 ABCC9O60706 1549 aa38.72■■■■□ 3.79
CLN3-239ENST00000628023 RB1CC1Q8TDY2 1594 aa36.93■■■■□ 3.5
CLN3-239ENST00000628023 NACADO15069 1562 aa36.7■■■■□ 3.46
CLN3-239ENST00000628023 DCAF8L2P0C7V8 631 aa36.63■■■■□ 3.45
CLN3-239ENST00000628023 MYO15BQ96JP2 1530 aa36.21■■■■□ 3.39
CLN3-239ENST00000628023 DNAJC5BQ9UF47 199 aa36.2■■■■□ 3.39
CLN3-239ENST00000628023 ZCCHC6Q5VYS8 1495 aaKnown RBP36.13■■■■□ 3.37
CLN3-239ENST00000628023 PABPN1Q86U42 306 aaKnown RBP eCLIP36.09■■■■□ 3.37
CLN3-239ENST00000628023 UNC13AQ9UPW8 1703 aa35.97■■■■□ 3.35
CLN3-239ENST00000628023 DCAF1Q9Y4B6 1507 aa35.81■■■■□ 3.32
CLN3-239ENST00000628023 BICRAQ9NZM4 1560 aa35.74■■■■□ 3.31
CLN3-239ENST00000628023 SHROOM4Q9ULL8 1493 aa35.39■■■■□ 3.26
CLN3-239ENST00000628023 SCRIBQ14160 1630 aa35.34■■■■□ 3.25
CLN3-239ENST00000628023 CC2D2AQ9P2K1 1620 aa34.95■■■■□ 3.19
CLN3-239ENST00000628023 EIF4G1Q04637 1599 aaKnown RBP34.91■■■■□ 3.18
CLN3-239ENST00000628023 CECR2Q9BXF3 1484 aa34.9■■■■□ 3.18
CLN3-239ENST00000628023 NCAPD3P42695 1498 aa33.87■■■■□ 3.01
CLN3-239ENST00000628023 ATAD2BQ9ULI0 1458 aa33.75■■■□□ 2.99
CLN3-239ENST00000628023 SMARCA4P51532 1647 aa33.72■■■□□ 2.99
CLN3-239ENST00000628023 SMARCA2P51531 1590 aa33.72■■■□□ 2.99
CLN3-239ENST00000628023 BAZ1AQ9NRL2 1556 aaPredicted RBP33.62■■■□□ 2.97
CLN3-239ENST00000628023 HMGXB3Q12766 1538 aa33.6■■■□□ 2.97
CLN3-239ENST00000628023 ERCC6Q03468 1493 aa33.5■■■□□ 2.95
CLN3-239ENST00000628023 BAZ1BQ9UIG0 1483 aaKnown RBP33.47■■■□□ 2.95
CLN3-239ENST00000628023 PEG3Q9GZU2 1588 aa33.39■■■□□ 2.94
CLN3-239ENST00000628023 MROH2BQ7Z745 1585 aa33.38■■■□□ 2.93
CLN3-239ENST00000628023 CUX2O14529 1486 aa33.37■■■□□ 2.93
CLN3-239ENST00000628023 DNAJC5Q9H3Z4 198 aa33.28■■■□□ 2.92
CLN3-239ENST00000628023 NESP48681 1621 aa33.24■■■□□ 2.91
CLN3-239ENST00000628023 LAMC3Q9Y6N6 1575 aa33.09■■■□□ 2.89
CLN3-239ENST00000628023 RSF1Q96T23 1441 aaPredicted RBP33.08■■■□□ 2.89
CLN3-239ENST00000628023 WIZO95785 1651 aa33.05■■■□□ 2.88
CLN3-239ENST00000628023 PDS5BQ9NTI5 1447 aa32.96■■■□□ 2.87
CLN3-239ENST00000628023 THOC2Q8NI27 1593 aaKnown RBP32.87■■■□□ 2.85
CLN3-239ENST00000628023 CADPSQ9ULU8 1353 aa32.86■■■□□ 2.85
CLN3-239ENST00000628023 KIF21AQ7Z4S6 1674 aa32.82■■■□□ 2.84
CLN3-239ENST00000628023 TOP2AP11388 1531 aaKnown RBP32.72■■■□□ 2.83
CLN3-239ENST00000628023 MRC2Q9UBG0 1479 aa32.61■■■□□ 2.81
CLN3-239ENST00000628023 CEP164Q9UPV0 1460 aa32.51■■■□□ 2.79
CLN3-239ENST00000628023 SUPT5HO00267 1087 aaKnown RBP32.51■■■□□ 2.79
CLN3-239ENST00000628023 WDR62O43379 1518 aa32.48■■■□□ 2.79
CLN3-239ENST00000628023 CFTRP13569 1480 aa32.48■■■□□ 2.79
CLN3-239ENST00000628023 FANCD2Q9BXW9 1451 aa32.48■■■□□ 2.79
CLN3-239ENST00000628023 CCDC88BA6NC98 1476 aa32.32■■■□□ 2.76
CLN3-239ENST00000628023 URB2Q14146 1524 aaKnown RBP32.16■■■□□ 2.74
CLN3-239ENST00000628023 PRDM2Q13029 1718 aa32.12■■■□□ 2.73
CLN3-239ENST00000628023 OSCARQ8IYS5 282 aa31.95■■■□□ 2.71
CLN3-239ENST00000628023 ABCC8Q09428 1581 aa31.87■■■□□ 2.69
CLN3-239ENST00000628023 IFT140Q96RY7 1462 aa31.87■■■□□ 2.69
CLN3-239ENST00000628023 TRIM41Q8WV44 630 aa31.87■■■□□ 2.69
CLN3-239ENST00000628023 TOPBP1Q92547 1522 aa31.85■■■□□ 2.69
CLN3-239ENST00000628023 DNMBPQ6XZF7 1577 aa31.74■■■□□ 2.67
CLN3-239ENST00000628023 ZNF608Q9ULD9 1512 aaPredicted RBP31.74■■■□□ 2.67
CLN3-239ENST00000628023 EIF4G3O43432 1585 aaKnown RBP31.56■■■□□ 2.64
CLN3-239ENST00000628023 TARBP1Q13395 1621 aaKnown RBP31.52■■■□□ 2.64
CLN3-239ENST00000628023 POLA1P09884 1462 aaPredicted RBP31.52■■■□□ 2.64
CLN3-239ENST00000628023 AQRO60306 1485 aaKnown RBP eCLIP31.5■■■□□ 2.636e-6■■■■□ 25.1
CLN3-239ENST00000628023 SOGA1O94964 1423 aa31.44■■■□□ 2.62
CLN3-239ENST00000628023 RAD54L2Q9Y4B4 1467 aa31.4■■■□□ 2.62
CLN3-239ENST00000628023 RIMBP3CA6NJZ7 1639 aa31.38■■■□□ 2.61
CLN3-239ENST00000628023 RIMBP3BA6NNM3 1639 aa31.38■■■□□ 2.61
CLN3-239ENST00000628023 RIMBP3Q9UFD9 1639 aa31.38■■■□□ 2.61
CLN3-239ENST00000628023 FBLN2P98095 1184 aa31.38■■■□□ 2.61
CLN3-239ENST00000628023 FGD5Q6ZNL6 1462 aa31.34■■■□□ 2.61
CLN3-239ENST00000628023 TDRD9Q8NDG6 1382 aaKnown RBP31.34■■■□□ 2.61
CLN3-239ENST00000628023 CUX1P39880 1505 aa31.32■■■□□ 2.6
CLN3-239ENST00000628023 ARHGEF11O15085 1522 aa31.31■■■□□ 2.6
CLN3-239ENST00000628023 CHD1O14646 1710 aa31.31■■■□□ 2.6
CLN3-239ENST00000628023 WDR97A6NE52 1622 aa31.27■■■□□ 2.6
CLN3-239ENST00000628023 WRNQ14191 1432 aaPredicted RBP eCLIP31.24■■■□□ 2.59
CLN3-239ENST00000628023 CHMP7Q8WUX9 453 aaPredicted RBP31.18■■■□□ 2.58
CLN3-239ENST00000628023 SNAPC4Q5SXM2 1469 aa31.18■■■□□ 2.58
CLN3-239ENST00000628023 CYB5RLQ6IPT4 315 aa31.16■■■□□ 2.58
CLN3-239ENST00000628023 GRIN2BQ13224 1484 aa31.15■■■□□ 2.58
CLN3-239ENST00000628023 MAGI1Q96QZ7 1491 aaPredicted RBP31.14■■■□□ 2.58
CLN3-239ENST00000628023 SYNJ1O43426 1573 aa31.13■■■□□ 2.57
CLN3-239ENST00000628023 TOP2BQ02880 1626 aa31.11■■■□□ 2.57
CLN3-239ENST00000628023 BIVM-ERCC5R4GMW8 1640 aa31.09■■■□□ 2.57
CLN3-239ENST00000628023 GAPVD1Q14C86 1478 aa31.04■■■□□ 2.56
CLN3-239ENST00000628023 SYNJ2O15056 1496 aa31.02■■■□□ 2.56
CLN3-239ENST00000628023 ABCA10Q8WWZ4 1543 aa31.01■■■□□ 2.55
CLN3-239ENST00000628023 ARAP1Q96P48 1450 aa30.99■■■□□ 2.55
CLN3-239ENST00000628023 PBRM1Q86U86 1689 aa30.96■■■□□ 2.55
CLN3-239ENST00000628023 CLASP1Q7Z460 1538 aa30.95■■■□□ 2.55
CLN3-239ENST00000628023 ABCA5Q8WWZ7 1642 aa30.9■■■□□ 2.54
CLN3-239ENST00000628023 TRHP20396 242 aaPredicted RBP30.84■■■□□ 2.53
CLN3-239ENST00000628023 GRIN2AQ12879 1464 aa30.72■■■□□ 2.51
CLN3-239ENST00000628023 FHAD1B1AJZ9 1412 aa30.67■■■□□ 2.5
CLN3-239ENST00000628023 ADAMTS12P58397 1594 aa30.66■■■□□ 2.5
CLN3-239ENST00000628023 ERICH3Q5RHP9 1530 aa30.63■■■□□ 2.49
CLN3-239ENST00000628023 NUP160Q12769 1436 aa30.59■■■□□ 2.49
CLN3-239ENST00000628023 KIF27Q86VH2 1401 aa30.57■■■□□ 2.48
CLN3-239ENST00000628023 CEP170Q5SW79 1584 aa30.56■■■□□ 2.48
CLN3-239ENST00000628023 ERCC6L2Q5T890 1561 aa30.45■■■□□ 2.46
CLN3-239ENST00000628023 CHIC1Q5VXU3 224 aa30.42■■■□□ 2.46
CLN3-239ENST00000628023 SHROOM2Q13796 1616 aa30.42■■■□□ 2.46
CLN3-239ENST00000628023 JPH4Q96JJ6 628 aa30.37■■■□□ 2.45
CLN3-239ENST00000628023 IGF1RP08069 1367 aa30.35■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 198.8 ms