RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 NISCHQ9Y2I1 1504 aa44.09■■■■■ 4.65
CLN3-243ENST00000635973 CCDC180Q9P1Z9 1646 aa39.53■■■■□ 3.92
CLN3-243ENST00000635973 ABCC9O60706 1549 aa39.37■■■■□ 3.89
CLN3-243ENST00000635973 RB1CC1Q8TDY2 1594 aa37.54■■■■□ 3.6
CLN3-243ENST00000635973 NACADO15069 1562 aa37.3■■■■□ 3.56
CLN3-243ENST00000635973 DCAF8L2P0C7V8 631 aa37.28■■■■□ 3.56
CLN3-243ENST00000635973 DNAJC5BQ9UF47 199 aa37■■■■□ 3.51
CLN3-243ENST00000635973 MYO15BQ96JP2 1530 aa36.8■■■■□ 3.48
CLN3-243ENST00000635973 UNC13AQ9UPW8 1703 aa36.68■■■■□ 3.46
CLN3-243ENST00000635973 PABPN1Q86U42 306 aaKnown RBP eCLIP36.64■■■■□ 3.46
CLN3-243ENST00000635973 ZCCHC6Q5VYS8 1495 aaKnown RBP36.56■■■■□ 3.44
CLN3-243ENST00000635973 DCAF1Q9Y4B6 1507 aa36.42■■■■□ 3.42
CLN3-243ENST00000635973 BICRAQ9NZM4 1560 aa36.32■■■■□ 3.41
CLN3-243ENST00000635973 SCRIBQ14160 1630 aa36.04■■■■□ 3.36
CLN3-243ENST00000635973 SHROOM4Q9ULL8 1493 aa35.91■■■■□ 3.34
CLN3-243ENST00000635973 CC2D2AQ9P2K1 1620 aa35.53■■■■□ 3.28
CLN3-243ENST00000635973 EIF4G1Q04637 1599 aaKnown RBP35.47■■■■□ 3.27
CLN3-243ENST00000635973 CECR2Q9BXF3 1484 aa35.47■■■■□ 3.27
CLN3-243ENST00000635973 NCAPD3P42695 1498 aa34.39■■■■□ 3.1
CLN3-243ENST00000635973 SMARCA4P51532 1647 aa34.37■■■■□ 3.09
CLN3-243ENST00000635973 ATAD2BQ9ULI0 1458 aa34.32■■■■□ 3.08
CLN3-243ENST00000635973 SMARCA2P51531 1590 aa34.29■■■■□ 3.08
CLN3-243ENST00000635973 BAZ1AQ9NRL2 1556 aaPredicted RBP34.26■■■■□ 3.07
CLN3-243ENST00000635973 HMGXB3Q12766 1538 aa34.17■■■■□ 3.06
CLN3-243ENST00000635973 BAZ1BQ9UIG0 1483 aaKnown RBP34.07■■■■□ 3.04
CLN3-243ENST00000635973 DNAJC5Q9H3Z4 198 aa34.02■■■■□ 3.04
CLN3-243ENST00000635973 ERCC6Q03468 1493 aa34■■■■□ 3.03
CLN3-243ENST00000635973 PEG3Q9GZU2 1588 aa33.99■■■■□ 3.03
CLN3-243ENST00000635973 MROH2BQ7Z745 1585 aa33.96■■■■□ 3.03
CLN3-243ENST00000635973 CUX2O14529 1486 aa33.94■■■■□ 3.02
CLN3-243ENST00000635973 NESP48681 1621 aa33.79■■■■□ 3
CLN3-243ENST00000635973 LAMC3Q9Y6N6 1575 aa33.64■■■□□ 2.98
CLN3-243ENST00000635973 WIZO95785 1651 aa33.62■■■□□ 2.97
CLN3-243ENST00000635973 PDS5BQ9NTI5 1447 aa33.45■■■□□ 2.95
CLN3-243ENST00000635973 THOC2Q8NI27 1593 aaKnown RBP33.45■■■□□ 2.95
CLN3-243ENST00000635973 KIF21AQ7Z4S6 1674 aa33.42■■■□□ 2.94
CLN3-243ENST00000635973 CADPSQ9ULU8 1353 aa33.38■■■□□ 2.93
CLN3-243ENST00000635973 RSF1Q96T23 1441 aaPredicted RBP33.33■■■□□ 2.93
CLN3-243ENST00000635973 TOP2AP11388 1531 aaKnown RBP33.19■■■□□ 2.9
CLN3-243ENST00000635973 MRC2Q9UBG0 1479 aa33.12■■■□□ 2.89
CLN3-243ENST00000635973 CEP164Q9UPV0 1460 aa33.05■■■□□ 2.88
CLN3-243ENST00000635973 CFTRP13569 1480 aa33.02■■■□□ 2.88
CLN3-243ENST00000635973 FANCD2Q9BXW9 1451 aa33.02■■■□□ 2.88
CLN3-243ENST00000635973 WDR62O43379 1518 aa33.01■■■□□ 2.87
CLN3-243ENST00000635973 PRDM2Q13029 1718 aa32.83■■■□□ 2.85
CLN3-243ENST00000635973 CCDC88BA6NC98 1476 aa32.8■■■□□ 2.84
CLN3-243ENST00000635973 URB2Q14146 1524 aaKnown RBP32.69■■■□□ 2.82
CLN3-243ENST00000635973 TRIM41Q8WV44 630 aa32.54■■■□□ 2.8
CLN3-243ENST00000635973 SUPT5HO00267 1087 aaKnown RBP32.51■■■□□ 2.79
CLN3-243ENST00000635973 ABCC8Q09428 1581 aa32.41■■■□□ 2.78
CLN3-243ENST00000635973 TOPBP1Q92547 1522 aa32.41■■■□□ 2.78
CLN3-243ENST00000635973 IFT140Q96RY7 1462 aa32.37■■■□□ 2.77
CLN3-243ENST00000635973 OSCARQ8IYS5 282 aa32.36■■■□□ 2.77
CLN3-243ENST00000635973 DNMBPQ6XZF7 1577 aa32.32■■■□□ 2.77
CLN3-243ENST00000635973 ZNF608Q9ULD9 1512 aaPredicted RBP32.25■■■□□ 2.75
CLN3-243ENST00000635973 EIF4G3O43432 1585 aaKnown RBP32.14■■■□□ 2.74
CLN3-243ENST00000635973 TARBP1Q13395 1621 aaKnown RBP32.08■■■□□ 2.73
CLN3-243ENST00000635973 POLA1P09884 1462 aaPredicted RBP32.07■■■□□ 2.72
CLN3-243ENST00000635973 AQRO60306 1485 aaKnown RBP eCLIP32.02■■■□□ 2.726e-6■■■■□ 25.1
CLN3-243ENST00000635973 SOGA1O94964 1423 aa31.98■■■□□ 2.71
CLN3-243ENST00000635973 RIMBP3CA6NJZ7 1639 aa31.97■■■□□ 2.71
CLN3-243ENST00000635973 RIMBP3BA6NNM3 1639 aa31.97■■■□□ 2.71
CLN3-243ENST00000635973 RIMBP3Q9UFD9 1639 aa31.97■■■□□ 2.71
CLN3-243ENST00000635973 RAD54L2Q9Y4B4 1467 aa31.96■■■□□ 2.71
CLN3-243ENST00000635973 FGD5Q6ZNL6 1462 aa31.93■■■□□ 2.7
CLN3-243ENST00000635973 CUX1P39880 1505 aa31.9■■■□□ 2.7
CLN3-243ENST00000635973 CHD1O14646 1710 aa31.9■■■□□ 2.7
CLN3-243ENST00000635973 FBLN2P98095 1184 aa31.88■■■□□ 2.69
CLN3-243ENST00000635973 ARHGEF11O15085 1522 aa31.87■■■□□ 2.69
CLN3-243ENST00000635973 TDRD9Q8NDG6 1382 aaKnown RBP31.86■■■□□ 2.69
CLN3-243ENST00000635973 WDR97A6NE52 1622 aa31.82■■■□□ 2.69
CLN3-243ENST00000635973 SNAPC4Q5SXM2 1469 aa31.71■■■□□ 2.67
CLN3-243ENST00000635973 GRIN2BQ13224 1484 aa31.67■■■□□ 2.66
CLN3-243ENST00000635973 CHMP7Q8WUX9 453 aaPredicted RBP31.65■■■□□ 2.66
CLN3-243ENST00000635973 MAGI1Q96QZ7 1491 aaPredicted RBP31.65■■■□□ 2.66
CLN3-243ENST00000635973 CYB5RLQ6IPT4 315 aa31.64■■■□□ 2.66
CLN3-243ENST00000635973 PBRM1Q86U86 1689 aa31.61■■■□□ 2.65
CLN3-243ENST00000635973 GAPVD1Q14C86 1478 aa31.59■■■□□ 2.65
CLN3-243ENST00000635973 ABCA10Q8WWZ4 1543 aa31.56■■■□□ 2.64
CLN3-243ENST00000635973 ARAP1Q96P48 1450 aa31.56■■■□□ 2.64
CLN3-243ENST00000635973 SYNJ1O43426 1573 aa31.55■■■□□ 2.64
CLN3-243ENST00000635973 SYNJ2O15056 1496 aa31.53■■■□□ 2.64
CLN3-243ENST00000635973 WRNQ14191 1432 aaPredicted RBP eCLIP31.52■■■□□ 2.64
CLN3-243ENST00000635973 ABCA5Q8WWZ7 1642 aa31.49■■■□□ 2.63
CLN3-243ENST00000635973 BIVM-ERCC5R4GMW8 1640 aa31.49■■■□□ 2.63
CLN3-243ENST00000635973 TOP2BQ02880 1626 aa31.49■■■□□ 2.63
CLN3-243ENST00000635973 CLASP1Q7Z460 1538 aa31.44■■■□□ 2.62
CLN3-243ENST00000635973 TRHP20396 242 aaPredicted RBP31.33■■■□□ 2.61
CLN3-243ENST00000635973 ADAMTS12P58397 1594 aa31.26■■■□□ 2.59
CLN3-243ENST00000635973 GRIN2AQ12879 1464 aa31.25■■■□□ 2.59
CLN3-243ENST00000635973 ERICH3Q5RHP9 1530 aa31.19■■■□□ 2.58
CLN3-243ENST00000635973 FHAD1B1AJZ9 1412 aa31.19■■■□□ 2.58
CLN3-243ENST00000635973 CEP170Q5SW79 1584 aa31.11■■■□□ 2.57
CLN3-243ENST00000635973 NUP160Q12769 1436 aa31.09■■■□□ 2.57
CLN3-243ENST00000635973 ERCC6L2Q5T890 1561 aa30.96■■■□□ 2.55
CLN3-243ENST00000635973 SHROOM2Q13796 1616 aa30.95■■■□□ 2.55
CLN3-243ENST00000635973 KIF27Q86VH2 1401 aa30.92■■■□□ 2.54
CLN3-243ENST00000635973 JPH4Q96JJ6 628 aa30.84■■■□□ 2.53
CLN3-243ENST00000635973 CUL7Q14999 1698 aa30.84■■■□□ 2.53
CLN3-243ENST00000635973 PRG4Q92954 1404 aaPredicted RBP30.83■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 187.7 ms