RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 NISCHQ9Y2I1 1504 aa37.05■■■■□ 3.52
CLN3-213ENST00000565047 CCDC180Q9P1Z9 1646 aa33.03■■■□□ 2.88
CLN3-213ENST00000565047 ABCC9O60706 1549 aa32.7■■■□□ 2.83
CLN3-213ENST00000565047 RB1CC1Q8TDY2 1594 aa31.26■■■□□ 2.6
CLN3-213ENST00000565047 NACADO15069 1562 aa31.17■■■□□ 2.58
CLN3-213ENST00000565047 DCAF8L2P0C7V8 631 aa30.96■■■□□ 2.55
CLN3-213ENST00000565047 MYO15BQ96JP2 1530 aa30.93■■■□□ 2.54
CLN3-213ENST00000565047 ZCCHC6Q5VYS8 1495 aaKnown RBP30.77■■■□□ 2.52
CLN3-213ENST00000565047 DCAF1Q9Y4B6 1507 aa30.65■■■□□ 2.5
CLN3-213ENST00000565047 UNC13AQ9UPW8 1703 aa30.59■■■□□ 2.49
CLN3-213ENST00000565047 PABPN1Q86U42 306 aaKnown RBP eCLIP30.52■■■□□ 2.48
CLN3-213ENST00000565047 DNAJC5BQ9UF47 199 aa30.52■■■□□ 2.48
CLN3-213ENST00000565047 BICRAQ9NZM4 1560 aa30.45■■■□□ 2.47
CLN3-213ENST00000565047 SCRIBQ14160 1630 aa30.09■■■□□ 2.41
CLN3-213ENST00000565047 SHROOM4Q9ULL8 1493 aa30.03■■■□□ 2.4
CLN3-213ENST00000565047 EIF4G1Q04637 1599 aaKnown RBP29.61■■■□□ 2.33
CLN3-213ENST00000565047 CC2D2AQ9P2K1 1620 aa29.58■■■□□ 2.33
CLN3-213ENST00000565047 CECR2Q9BXF3 1484 aa29.43■■■□□ 2.3
CLN3-213ENST00000565047 NCAPD3P42695 1498 aa28.84■■■□□ 2.21
CLN3-213ENST00000565047 SMARCA4P51532 1647 aa28.79■■■□□ 2.2
CLN3-213ENST00000565047 ATAD2BQ9ULI0 1458 aa28.77■■■□□ 2.2
CLN3-213ENST00000565047 BAZ1AQ9NRL2 1556 aaPredicted RBP28.68■■■□□ 2.18
CLN3-213ENST00000565047 SMARCA2P51531 1590 aa28.65■■■□□ 2.18
CLN3-213ENST00000565047 HMGXB3Q12766 1538 aa28.6■■■□□ 2.17
CLN3-213ENST00000565047 PEG3Q9GZU2 1588 aa28.57■■■□□ 2.16
CLN3-213ENST00000565047 MROH2BQ7Z745 1585 aa28.55■■■□□ 2.16
CLN3-213ENST00000565047 BAZ1BQ9UIG0 1483 aaKnown RBP28.43■■■□□ 2.14
CLN3-213ENST00000565047 NESP48681 1621 aa28.24■■■□□ 2.11
CLN3-213ENST00000565047 WIZO95785 1651 aa28.18■■■□□ 2.1
CLN3-213ENST00000565047 ERCC6Q03468 1493 aa28.14■■■□□ 2.09
CLN3-213ENST00000565047 RSF1Q96T23 1441 aaPredicted RBP28.1■■■□□ 2.09
CLN3-213ENST00000565047 CUX2O14529 1486 aa28.07■■■□□ 2.08
CLN3-213ENST00000565047 LAMC3Q9Y6N6 1575 aa28.06■■■□□ 2.08
CLN3-213ENST00000565047 CADPSQ9ULU8 1353 aa27.94■■■□□ 2.06
CLN3-213ENST00000565047 THOC2Q8NI27 1593 aaKnown RBP27.87■■■□□ 2.05
CLN3-213ENST00000565047 PDS5BQ9NTI5 1447 aa27.87■■■□□ 2.05
CLN3-213ENST00000565047 TOP2AP11388 1531 aaKnown RBP27.85■■■□□ 2.05
CLN3-213ENST00000565047 KIF21AQ7Z4S6 1674 aa27.82■■■□□ 2.04
CLN3-213ENST00000565047 DNAJC5Q9H3Z4 198 aa27.73■■■□□ 2.03
CLN3-213ENST00000565047 CFTRP13569 1480 aa27.71■■■□□ 2.03
CLN3-213ENST00000565047 MRC2Q9UBG0 1479 aa27.62■■■□□ 2.01
CLN3-213ENST00000565047 FANCD2Q9BXW9 1451 aa27.58■■■□□ 2.01
CLN3-213ENST00000565047 WDR62O43379 1518 aa27.57■■■□□ 2
CLN3-213ENST00000565047 CCDC88BA6NC98 1476 aa27.57■■■□□ 2
CLN3-213ENST00000565047 CEP164Q9UPV0 1460 aa27.55■■■□□ 2
CLN3-213ENST00000565047 URB2Q14146 1524 aaKnown RBP27.38■■□□□ 1.97
CLN3-213ENST00000565047 PRDM2Q13029 1718 aa27.35■■□□□ 1.97
CLN3-213ENST00000565047 TOPBP1Q92547 1522 aa27.11■■□□□ 1.93
CLN3-213ENST00000565047 ABCC8Q09428 1581 aa27.05■■□□□ 1.92
CLN3-213ENST00000565047 DNMBPQ6XZF7 1577 aa27.02■■□□□ 1.92
CLN3-213ENST00000565047 IFT140Q96RY7 1462 aa27.02■■□□□ 1.92
CLN3-213ENST00000565047 ZNF608Q9ULD9 1512 aaPredicted RBP26.99■■□□□ 1.91
CLN3-213ENST00000565047 SUPT5HO00267 1087 aaKnown RBP26.97■■□□□ 1.91
CLN3-213ENST00000565047 TARBP1Q13395 1621 aaKnown RBP26.88■■□□□ 1.89
CLN3-213ENST00000565047 POLA1P09884 1462 aaPredicted RBP26.87■■□□□ 1.89
CLN3-213ENST00000565047 OSCARQ8IYS5 282 aa26.84■■□□□ 1.89
CLN3-213ENST00000565047 CUX1P39880 1505 aa26.8■■□□□ 1.88
CLN3-213ENST00000565047 EIF4G3O43432 1585 aaKnown RBP26.8■■□□□ 1.88
CLN3-213ENST00000565047 AQRO60306 1485 aaKnown RBP eCLIP26.76■■□□□ 1.876e-6■■■■□ 25.1
CLN3-213ENST00000565047 RAD54L2Q9Y4B4 1467 aa26.76■■□□□ 1.87
CLN3-213ENST00000565047 SOGA1O94964 1423 aa26.73■■□□□ 1.87
CLN3-213ENST00000565047 FGD5Q6ZNL6 1462 aa26.73■■□□□ 1.87
CLN3-213ENST00000565047 TDRD9Q8NDG6 1382 aaKnown RBP26.64■■□□□ 1.86
CLN3-213ENST00000565047 WDR97A6NE52 1622 aa26.59■■□□□ 1.85
CLN3-213ENST00000565047 CHD1O14646 1710 aa26.51■■□□□ 1.83
CLN3-213ENST00000565047 TRIM41Q8WV44 630 aa26.5■■□□□ 1.83
CLN3-213ENST00000565047 ABCA10Q8WWZ4 1543 aa26.47■■□□□ 1.83
CLN3-213ENST00000565047 SNAPC4Q5SXM2 1469 aa26.47■■□□□ 1.83
CLN3-213ENST00000565047 GRIN2BQ13224 1484 aa26.46■■□□□ 1.83
CLN3-213ENST00000565047 RIMBP3CA6NJZ7 1639 aa26.44■■□□□ 1.82
CLN3-213ENST00000565047 RIMBP3BA6NNM3 1639 aa26.44■■□□□ 1.82
CLN3-213ENST00000565047 RIMBP3Q9UFD9 1639 aa26.44■■□□□ 1.82
CLN3-213ENST00000565047 WRNQ14191 1432 aaPredicted RBP eCLIP26.43■■□□□ 1.82
CLN3-213ENST00000565047 TOP2BQ02880 1626 aa26.43■■□□□ 1.82
CLN3-213ENST00000565047 BIVM-ERCC5R4GMW8 1640 aa26.43■■□□□ 1.82
CLN3-213ENST00000565047 MAGI1Q96QZ7 1491 aaPredicted RBP26.42■■□□□ 1.82
CLN3-213ENST00000565047 SYNJ1O43426 1573 aa26.41■■□□□ 1.82
CLN3-213ENST00000565047 GAPVD1Q14C86 1478 aa26.41■■□□□ 1.82
CLN3-213ENST00000565047 ARHGEF11O15085 1522 aa26.4■■□□□ 1.82
CLN3-213ENST00000565047 FBLN2P98095 1184 aa26.4■■□□□ 1.82
CLN3-213ENST00000565047 ABCA5Q8WWZ7 1642 aa26.39■■□□□ 1.81
CLN3-213ENST00000565047 SYNJ2O15056 1496 aa26.34■■□□□ 1.81
CLN3-213ENST00000565047 PBRM1Q86U86 1689 aa26.33■■□□□ 1.81
CLN3-213ENST00000565047 CHMP7Q8WUX9 453 aaPredicted RBP26.32■■□□□ 1.8
CLN3-213ENST00000565047 CLASP1Q7Z460 1538 aa26.29■■□□□ 1.8
CLN3-213ENST00000565047 ARAP1Q96P48 1450 aa26.19■■□□□ 1.78
CLN3-213ENST00000565047 CYB5RLQ6IPT4 315 aa26.17■■□□□ 1.78
CLN3-213ENST00000565047 ADAMTS12P58397 1594 aa26.14■■□□□ 1.78
CLN3-213ENST00000565047 ERICH3Q5RHP9 1530 aa26.13■■□□□ 1.77
CLN3-213ENST00000565047 GRIN2AQ12879 1464 aa26.12■■□□□ 1.77
CLN3-213ENST00000565047 FHAD1B1AJZ9 1412 aa26.1■■□□□ 1.77
CLN3-213ENST00000565047 NUP160Q12769 1436 aa26.07■■□□□ 1.76
CLN3-213ENST00000565047 CEP170Q5SW79 1584 aa26.03■■□□□ 1.76
CLN3-213ENST00000565047 IGF1RP08069 1367 aa25.94■■□□□ 1.74
CLN3-213ENST00000565047 ERCC6L2Q5T890 1561 aa25.91■■□□□ 1.74
CLN3-213ENST00000565047 SHROOM2Q13796 1616 aa25.9■■□□□ 1.74
CLN3-213ENST00000565047 KIF27Q86VH2 1401 aa25.88■■□□□ 1.73
CLN3-213ENST00000565047 JPH4Q96JJ6 628 aa25.78■■□□□ 1.72
CLN3-213ENST00000565047 RUSC2Q8N2Y8 1516 aa25.77■■□□□ 1.72
CLN3-213ENST00000565047 CUL7Q14999 1698 aa25.77■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 178.7 ms