RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 NISCHQ9Y2I1 1504 aa45.32■■■■■ 4.85
CLN3-221ENST00000566057 CCDC180Q9P1Z9 1646 aa40.44■■■■■ 4.06
CLN3-221ENST00000566057 ABCC9O60706 1549 aa39.93■■■■□ 3.98
CLN3-221ENST00000566057 RB1CC1Q8TDY2 1594 aa38.21■■■■□ 3.71
CLN3-221ENST00000566057 NACADO15069 1562 aa38.08■■■■□ 3.69
CLN3-221ENST00000566057 DCAF8L2P0C7V8 631 aa38.04■■■■□ 3.68
CLN3-221ENST00000566057 MYO15BQ96JP2 1530 aa37.71■■■■□ 3.63
CLN3-221ENST00000566057 ZCCHC6Q5VYS8 1495 aaKnown RBP37.66■■■■□ 3.62
CLN3-221ENST00000566057 UNC13AQ9UPW8 1703 aa37.49■■■■□ 3.59
CLN3-221ENST00000566057 DCAF1Q9Y4B6 1507 aa37.44■■■■□ 3.58
CLN3-221ENST00000566057 PABPN1Q86U42 306 aaKnown RBP eCLIP37.28■■■■□ 3.56
CLN3-221ENST00000566057 BICRAQ9NZM4 1560 aa37.15■■■■□ 3.54
CLN3-221ENST00000566057 DNAJC5BQ9UF47 199 aa37.05■■■■□ 3.52
CLN3-221ENST00000566057 SCRIBQ14160 1630 aa36.91■■■■□ 3.5
CLN3-221ENST00000566057 SHROOM4Q9ULL8 1493 aa36.57■■■■□ 3.45
CLN3-221ENST00000566057 EIF4G1Q04637 1599 aaKnown RBP36.15■■■■□ 3.38
CLN3-221ENST00000566057 CC2D2AQ9P2K1 1620 aa36.12■■■■□ 3.37
CLN3-221ENST00000566057 CECR2Q9BXF3 1484 aa35.89■■■■□ 3.34
CLN3-221ENST00000566057 SMARCA4P51532 1647 aa35.25■■■■□ 3.23
CLN3-221ENST00000566057 NCAPD3P42695 1498 aa35.16■■■■□ 3.22
CLN3-221ENST00000566057 ATAD2BQ9ULI0 1458 aa35.13■■■■□ 3.21
CLN3-221ENST00000566057 BAZ1AQ9NRL2 1556 aaPredicted RBP35.12■■■■□ 3.21
CLN3-221ENST00000566057 SMARCA2P51531 1590 aa35.05■■■■□ 3.2
CLN3-221ENST00000566057 MROH2BQ7Z745 1585 aa34.96■■■■□ 3.19
CLN3-221ENST00000566057 HMGXB3Q12766 1538 aa34.93■■■■□ 3.18
CLN3-221ENST00000566057 PEG3Q9GZU2 1588 aa34.89■■■■□ 3.18
CLN3-221ENST00000566057 BAZ1BQ9UIG0 1483 aaKnown RBP34.8■■■■□ 3.16
CLN3-221ENST00000566057 WIZO95785 1651 aa34.6■■■■□ 3.13
CLN3-221ENST00000566057 NESP48681 1621 aa34.48■■■■□ 3.11
CLN3-221ENST00000566057 RSF1Q96T23 1441 aaPredicted RBP34.4■■■■□ 3.1
CLN3-221ENST00000566057 ERCC6Q03468 1493 aa34.39■■■■□ 3.1
CLN3-221ENST00000566057 LAMC3Q9Y6N6 1575 aa34.28■■■■□ 3.08
CLN3-221ENST00000566057 CUX2O14529 1486 aa34.14■■■■□ 3.06
CLN3-221ENST00000566057 TOP2AP11388 1531 aaKnown RBP34.13■■■■□ 3.05
CLN3-221ENST00000566057 CADPSQ9ULU8 1353 aa34.11■■■■□ 3.05
CLN3-221ENST00000566057 KIF21AQ7Z4S6 1674 aa34.09■■■■□ 3.05
CLN3-221ENST00000566057 PDS5BQ9NTI5 1447 aa34.04■■■■□ 3.04
CLN3-221ENST00000566057 THOC2Q8NI27 1593 aaKnown RBP34.01■■■■□ 3.03
CLN3-221ENST00000566057 CFTRP13569 1480 aa33.84■■■■□ 3.01
CLN3-221ENST00000566057 CCDC88BA6NC98 1476 aa33.77■■■■□ 3
CLN3-221ENST00000566057 FANCD2Q9BXW9 1451 aa33.72■■■□□ 2.99
CLN3-221ENST00000566057 MRC2Q9UBG0 1479 aa33.72■■■□□ 2.99
CLN3-221ENST00000566057 CEP164Q9UPV0 1460 aa33.69■■■□□ 2.98
CLN3-221ENST00000566057 WDR62O43379 1518 aa33.64■■■□□ 2.98
CLN3-221ENST00000566057 PRDM2Q13029 1718 aa33.62■■■□□ 2.97
CLN3-221ENST00000566057 DNAJC5Q9H3Z4 198 aa33.57■■■□□ 2.96
CLN3-221ENST00000566057 URB2Q14146 1524 aaKnown RBP33.44■■■□□ 2.94
CLN3-221ENST00000566057 SUPT5HO00267 1087 aaKnown RBP33.31■■■□□ 2.92
CLN3-221ENST00000566057 TOPBP1Q92547 1522 aa33.16■■■□□ 2.9
CLN3-221ENST00000566057 ABCC8Q09428 1581 aa33.08■■■□□ 2.89
CLN3-221ENST00000566057 DNMBPQ6XZF7 1577 aa33.08■■■□□ 2.89
CLN3-221ENST00000566057 IFT140Q96RY7 1462 aa32.99■■■□□ 2.87
CLN3-221ENST00000566057 ZNF608Q9ULD9 1512 aaPredicted RBP32.95■■■□□ 2.87
CLN3-221ENST00000566057 TARBP1Q13395 1621 aaKnown RBP32.86■■■□□ 2.85
CLN3-221ENST00000566057 POLA1P09884 1462 aaPredicted RBP32.86■■■□□ 2.85
CLN3-221ENST00000566057 CUX1P39880 1505 aa32.81■■■□□ 2.84
CLN3-221ENST00000566057 EIF4G3O43432 1585 aaKnown RBP32.79■■■□□ 2.84
CLN3-221ENST00000566057 RAD54L2Q9Y4B4 1467 aa32.75■■■□□ 2.83
CLN3-221ENST00000566057 FGD5Q6ZNL6 1462 aa32.73■■■□□ 2.83
CLN3-221ENST00000566057 AQRO60306 1485 aaKnown RBP eCLIP32.72■■■□□ 2.836e-6■■■■□ 25.1
CLN3-221ENST00000566057 SOGA1O94964 1423 aa32.71■■■□□ 2.83
CLN3-221ENST00000566057 OSCARQ8IYS5 282 aa32.7■■■□□ 2.83
CLN3-221ENST00000566057 TDRD9Q8NDG6 1382 aaKnown RBP32.59■■■□□ 2.81
CLN3-221ENST00000566057 WDR97A6NE52 1622 aa32.51■■■□□ 2.79
CLN3-221ENST00000566057 CHD1O14646 1710 aa32.49■■■□□ 2.79
CLN3-221ENST00000566057 BIVM-ERCC5R4GMW8 1640 aa32.43■■■□□ 2.78
CLN3-221ENST00000566057 WRNQ14191 1432 aaPredicted RBP eCLIP32.42■■■□□ 2.78
CLN3-221ENST00000566057 SYNJ1O43426 1573 aa32.41■■■□□ 2.78
CLN3-221ENST00000566057 TOP2BQ02880 1626 aa32.41■■■□□ 2.78
CLN3-221ENST00000566057 FBLN2P98095 1184 aa32.38■■■□□ 2.77
CLN3-221ENST00000566057 ABCA10Q8WWZ4 1543 aa32.37■■■□□ 2.77
CLN3-221ENST00000566057 SNAPC4Q5SXM2 1469 aa32.37■■■□□ 2.77
CLN3-221ENST00000566057 GRIN2BQ13224 1484 aa32.35■■■□□ 2.77
CLN3-221ENST00000566057 PBRM1Q86U86 1689 aa32.33■■■□□ 2.77
CLN3-221ENST00000566057 GAPVD1Q14C86 1478 aa32.32■■■□□ 2.76
CLN3-221ENST00000566057 TRIM41Q8WV44 630 aa32.32■■■□□ 2.76
CLN3-221ENST00000566057 ABCA5Q8WWZ7 1642 aa32.3■■■□□ 2.76
CLN3-221ENST00000566057 MAGI1Q96QZ7 1491 aaPredicted RBP32.29■■■□□ 2.76
CLN3-221ENST00000566057 RIMBP3CA6NJZ7 1639 aa32.26■■■□□ 2.76
CLN3-221ENST00000566057 RIMBP3BA6NNM3 1639 aa32.26■■■□□ 2.76
CLN3-221ENST00000566057 RIMBP3Q9UFD9 1639 aa32.26■■■□□ 2.76
CLN3-221ENST00000566057 CHMP7Q8WUX9 453 aaPredicted RBP32.21■■■□□ 2.75
CLN3-221ENST00000566057 SYNJ2O15056 1496 aa32.18■■■□□ 2.74
CLN3-221ENST00000566057 ARHGEF11O15085 1522 aa32.18■■■□□ 2.74
CLN3-221ENST00000566057 CLASP1Q7Z460 1538 aa32.07■■■□□ 2.72
CLN3-221ENST00000566057 ADAMTS12P58397 1594 aa32■■■□□ 2.71
CLN3-221ENST00000566057 ERICH3Q5RHP9 1530 aa31.97■■■□□ 2.71
CLN3-221ENST00000566057 GRIN2AQ12879 1464 aa31.94■■■□□ 2.7
CLN3-221ENST00000566057 CYB5RLQ6IPT4 315 aa31.93■■■□□ 2.7
CLN3-221ENST00000566057 FHAD1B1AJZ9 1412 aa31.92■■■□□ 2.7
CLN3-221ENST00000566057 ARAP1Q96P48 1450 aa31.91■■■□□ 2.7
CLN3-221ENST00000566057 CEP170Q5SW79 1584 aa31.84■■■□□ 2.69
CLN3-221ENST00000566057 NUP160Q12769 1436 aa31.81■■■□□ 2.68
CLN3-221ENST00000566057 KIF27Q86VH2 1401 aa31.75■■■□□ 2.67
CLN3-221ENST00000566057 IGF1RP08069 1367 aa31.72■■■□□ 2.67
CLN3-221ENST00000566057 ERCC6L2Q5T890 1561 aa31.67■■■□□ 2.66
CLN3-221ENST00000566057 SHROOM2Q13796 1616 aa31.65■■■□□ 2.66
CLN3-221ENST00000566057 CUL7Q14999 1698 aa31.63■■■□□ 2.65
CLN3-221ENST00000566057 RUSC2Q8N2Y8 1516 aa31.54■■■□□ 2.64
CLN3-221ENST00000566057 JPH4Q96JJ6 628 aa31.51■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms