RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 NISCHQ9Y2I1 1504 aa44.04■■■■■ 4.64
CLN3-230ENST00000568076 CCDC180Q9P1Z9 1646 aa37.86■■■■□ 3.65
CLN3-230ENST00000568076 ZCCHC6Q5VYS8 1495 aaKnown RBP37.16■■■■□ 3.54
CLN3-230ENST00000568076 SHROOM4Q9ULL8 1493 aa36.76■■■■□ 3.47
CLN3-230ENST00000568076 DCAF8L2P0C7V8 631 aa36.32■■■■□ 3.4
CLN3-230ENST00000568076 DCAF1Q9Y4B6 1507 aa36.28■■■■□ 3.4
CLN3-230ENST00000568076 SUPT5HO00267 1087 aaKnown RBP35.73■■■■□ 3.31
CLN3-230ENST00000568076 MYO15BQ96JP2 1530 aa35.5■■■■□ 3.27
CLN3-230ENST00000568076 ABCC9O60706 1549 aa35.36■■■■□ 3.25
CLN3-230ENST00000568076 SCRIBQ14160 1630 aa35.17■■■■□ 3.22
CLN3-230ENST00000568076 NACADO15069 1562 aa35.11■■■■□ 3.21
CLN3-230ENST00000568076 RB1CC1Q8TDY2 1594 aa34.64■■■■□ 3.14
CLN3-230ENST00000568076 CHIC1Q5VXU3 224 aa34.58■■■■□ 3.13
CLN3-230ENST00000568076 RSF1Q96T23 1441 aaPredicted RBP34.55■■■■□ 3.12
CLN3-230ENST00000568076 CECR2Q9BXF3 1484 aa34.3■■■■□ 3.08
CLN3-230ENST00000568076 MROH2BQ7Z745 1585 aa34.15■■■■□ 3.06
CLN3-230ENST00000568076 UNC13AQ9UPW8 1703 aa34.09■■■■□ 3.05
CLN3-230ENST00000568076 WIZO95785 1651 aa33.92■■■■□ 3.02
CLN3-230ENST00000568076 BAZ1AQ9NRL2 1556 aaPredicted RBP33.89■■■■□ 3.02
CLN3-230ENST00000568076 BICRAQ9NZM4 1560 aa33.72■■■□□ 2.99
CLN3-230ENST00000568076 SMARCA4P51532 1647 aa33.68■■■□□ 2.98
CLN3-230ENST00000568076 PABPN1Q86U42 306 aaKnown RBP eCLIP33.6■■■□□ 2.97
CLN3-230ENST00000568076 TOP2AP11388 1531 aaKnown RBP33.46■■■□□ 2.95
CLN3-230ENST00000568076 TRIM41Q8WV44 630 aa33.41■■■□□ 2.94
CLN3-230ENST00000568076 LOC105371045A0A1W2PR82 267 aa33.4■■■□□ 2.94
CLN3-230ENST00000568076 EIF4G1Q04637 1599 aaKnown RBP33.31■■■□□ 2.92
CLN3-230ENST00000568076 SMARCA2P51531 1590 aa33.24■■■□□ 2.91
CLN3-230ENST00000568076 CCDC88BA6NC98 1476 aa33.24■■■□□ 2.91
CLN3-230ENST00000568076 PEG3Q9GZU2 1588 aa33.16■■■□□ 2.9
CLN3-230ENST00000568076 FAM9AQ8IZU1 332 aaPredicted RBP32.99■■■□□ 2.87
CLN3-230ENST00000568076 ATAD2BQ9ULI0 1458 aa32.95■■■□□ 2.87
CLN3-230ENST00000568076 ABCC8Q09428 1581 aa32.87■■■□□ 2.85
CLN3-230ENST00000568076 BAZ1BQ9UIG0 1483 aaKnown RBP32.79■■■□□ 2.84
CLN3-230ENST00000568076 PCGF6Q9BYE7 350 aa32.69■■■□□ 2.82
CLN3-230ENST00000568076 EHMT2Q96KQ7 1210 aa32.61■■■□□ 2.81
CLN3-230ENST00000568076 NCAPD3P42695 1498 aa32.47■■■□□ 2.79
CLN3-230ENST00000568076 WRNQ14191 1432 aaPredicted RBP eCLIP32.45■■■□□ 2.79
CLN3-230ENST00000568076 HMGXB3Q12766 1538 aa32.45■■■□□ 2.79
CLN3-230ENST00000568076 SOGA1O94964 1423 aa32.43■■■□□ 2.78
CLN3-230ENST00000568076 SYNJ1O43426 1573 aa32.34■■■□□ 2.77
CLN3-230ENST00000568076 HRCP23327 699 aa32.34■■■□□ 2.77
CLN3-230ENST00000568076 TRIM26Q12899 539 aaPredicted RBP32.34■■■□□ 2.77
CLN3-230ENST00000568076 RUSC2Q8N2Y8 1516 aa32.3■■■□□ 2.76
CLN3-230ENST00000568076 EEA1Q15075 1411 aa32.29■■■□□ 2.76
CLN3-230ENST00000568076 CSRNP3Q8WYN3 585 aa32.19■■■□□ 2.74
CLN3-230ENST00000568076 TOP2BQ02880 1626 aa32.05■■■□□ 2.72
CLN3-230ENST00000568076 TNIKQ9UKE5 1360 aa32.04■■■□□ 2.72
CLN3-230ENST00000568076 CFTRP13569 1480 aa32.01■■■□□ 2.71
CLN3-230ENST00000568076 CEP162Q5TB80 1403 aa31.99■■■□□ 2.71
CLN3-230ENST00000568076 BIVM-ERCC5R4GMW8 1640 aa31.98■■■□□ 2.71
CLN3-230ENST00000568076 GOLGA3Q08378 1498 aa31.97■■■□□ 2.71
CLN3-230ENST00000568076 CC2D2AQ9P2K1 1620 aa31.94■■■□□ 2.7
CLN3-230ENST00000568076 KIF21BO75037 1637 aa31.89■■■□□ 2.69
CLN3-230ENST00000568076 UBTFP17480 764 aaKnown RBP31.88■■■□□ 2.69
CLN3-230ENST00000568076 CEP164Q9UPV0 1460 aa31.87■■■□□ 2.69
CLN3-230ENST00000568076 CUX1P39880 1505 aa31.85■■■□□ 2.69
CLN3-230ENST00000568076 PPARGC1BQ86YN6 1023 aaKnown RBP31.83■■■□□ 2.69
CLN3-230ENST00000568076 PRDM2Q13029 1718 aa31.77■■■□□ 2.68
CLN3-230ENST00000568076 CADPSQ9ULU8 1353 aa31.74■■■□□ 2.67
CLN3-230ENST00000568076 RAPGEF2Q9Y4G8 1499 aa31.7■■■□□ 2.67
CLN3-230ENST00000568076 PRXQ9BXM0 1461 aa31.55■■■□□ 2.64
CLN3-230ENST00000568076 CLIP1P30622 1438 aa31.54■■■□□ 2.64
CLN3-230ENST00000568076 KIF27Q86VH2 1401 aa31.51■■■□□ 2.64
CLN3-230ENST00000568076 ERICH3Q5RHP9 1530 aa31.5■■■□□ 2.63
CLN3-230ENST00000568076 FANCD2Q9BXW9 1451 aa31.41■■■□□ 2.62
CLN3-230ENST00000568076 TTBK1Q5TCY1 1321 aaPredicted RBP31.4■■■□□ 2.62
CLN3-230ENST00000568076 FGD5Q6ZNL6 1462 aa31.36■■■□□ 2.61
CLN3-230ENST00000568076 VPS8Q8N3P4 1428 aa31.36■■■□□ 2.61
CLN3-230ENST00000568076 ZEB1P37275 1124 aaPredicted RBP31.34■■■□□ 2.61
CLN3-230ENST00000568076 NESP48681 1621 aa31.34■■■□□ 2.61
CLN3-230ENST00000568076 CUX2O14529 1486 aa31.32■■■□□ 2.6
CLN3-230ENST00000568076 RANGAP1P46060 587 aaPredicted RBP31.29■■■□□ 2.6
CLN3-230ENST00000568076 IGF1RP08069 1367 aa31.24■■■□□ 2.59
CLN3-230ENST00000568076 DNMBPQ6XZF7 1577 aa31.22■■■□□ 2.59
CLN3-230ENST00000568076 LAMC3Q9Y6N6 1575 aa31.18■■■□□ 2.58
CLN3-230ENST00000568076 DNAJC5BQ9UF47 199 aa31.17■■■□□ 2.58
CLN3-230ENST00000568076 ARAP1Q96P48 1450 aa31.17■■■□□ 2.58
CLN3-230ENST00000568076 TOPBP1Q92547 1522 aa31.16■■■□□ 2.58
CLN3-230ENST00000568076 POLA1P09884 1462 aaPredicted RBP31.09■■■□□ 2.57
CLN3-230ENST00000568076 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.09■■■□□ 2.57
CLN3-230ENST00000568076 RAD54L2Q9Y4B4 1467 aa31.08■■■□□ 2.57
CLN3-230ENST00000568076 CARMIL1Q5VZK9 1371 aa31.07■■■□□ 2.56
CLN3-230ENST00000568076 ABCA10Q8WWZ4 1543 aa31.05■■■□□ 2.56
CLN3-230ENST00000568076 APLP2Q06481 763 aa31.03■■■□□ 2.56
CLN3-230ENST00000568076 URB2Q14146 1524 aaKnown RBP31.01■■■□□ 2.56
CLN3-230ENST00000568076 ARHGAP35Q9NRY4 1499 aa31■■■□□ 2.55
CLN3-230ENST00000568076 CCER1Q8TC90 406 aaPredicted RBP30.96■■■□□ 2.55
CLN3-230ENST00000568076 PDS5BQ9NTI5 1447 aa30.94■■■□□ 2.54
CLN3-230ENST00000568076 WDR97A6NE52 1622 aa30.86■■■□□ 2.53
CLN3-230ENST00000568076 KIF21AQ7Z4S6 1674 aa30.86■■■□□ 2.53
CLN3-230ENST00000568076 KANK4Q5T7N3 995 aaPredicted RBP30.8■■■□□ 2.52
CLN3-230ENST00000568076 CUL7Q14999 1698 aa30.78■■■□□ 2.52
CLN3-230ENST00000568076 HNRNPUL2Q1KMD3 747 aaKnown RBP30.75■■■□□ 2.51
CLN3-230ENST00000568076 ABCA5Q8WWZ7 1642 aa30.73■■■□□ 2.51
CLN3-230ENST00000568076 TDRD9Q8NDG6 1382 aaKnown RBP30.7■■■□□ 2.51
CLN3-230ENST00000568076 GAPVD1Q14C86 1478 aa30.65■■■□□ 2.5
CLN3-230ENST00000568076 TARBP1Q13395 1621 aaKnown RBP30.62■■■□□ 2.49
CLN3-230ENST00000568076 CTTNBP2Q8WZ74 1663 aa30.59■■■□□ 2.49
CLN3-230ENST00000568076 MAP3K1Q13233 1512 aa30.57■■■□□ 2.48
CLN3-230ENST00000568076 TIAM1Q13009 1591 aa30.56■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms