RNA–Protein interactions for RNA: ENST00000314045.11

DDX54-202, Transcript of DEAD-box helicase 54, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene DDX54, Length 4,380 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-202ENST00000314045 NISCHQ9Y2I1 1504 aa26.09■■□□□ 1.77
DDX54-202ENST00000314045 DCAF8L2P0C7V8 631 aa24.93■■□□□ 1.58
DDX54-202ENST00000314045 SHROOM4Q9ULL8 1493 aa23.65■■□□□ 1.38
DDX54-202ENST00000314045 SUPT5HO00267 1087 aaKnown RBP23.56■■□□□ 1.36
DDX54-202ENST00000314045 EHMT2Q96KQ7 1210 aa22.25■■□□□ 1.15
DDX54-202ENST00000314045 ABCC9O60706 1549 aa22.25■■□□□ 1.15
DDX54-202ENST00000314045 FAM9AQ8IZU1 332 aaPredicted RBP22.05■■□□□ 1.12
DDX54-202ENST00000314045 TRIM41Q8WV44 630 aa21.92■■□□□ 1.1
DDX54-202ENST00000314045 CCDC180Q9P1Z9 1646 aa21.76■■□□□ 1.07
DDX54-202ENST00000314045 PABPN1Q86U42 306 aaKnown RBP eCLIP21.74■■□□□ 1.07
DDX54-202ENST00000314045 ZCCHC6Q5VYS8 1495 aaKnown RBP21.67■■□□□ 1.06
DDX54-202ENST00000314045 APLP2Q06481 763 aa21.59■■□□□ 1.05
DDX54-202ENST00000314045 CHIC1Q5VXU3 224 aa21.49■■□□□ 1.03
DDX54-202ENST00000314045 RANGAP1P46060 587 aaPredicted RBP21.46■■□□□ 1.03
DDX54-202ENST00000314045 UBTFP17480 764 aaKnown RBP21.42■■□□□ 1.02
DDX54-202ENST00000314045 TTBK1Q5TCY1 1321 aaPredicted RBP21.38■■□□□ 1.01
DDX54-202ENST00000314045 PCGF6Q9BYE7 350 aa21.32■■□□□ 1
DDX54-202ENST00000314045 SCRIBQ14160 1630 aa21.27■■□□□ 1
DDX54-202ENST00000314045 LOC105371045A0A1W2PR82 267 aa21.18■□□□□ 0.98
DDX54-202ENST00000314045 ATP1B4Q9UN42 357 aaPredicted RBP21.12■□□□□ 0.97
DDX54-202ENST00000314045 RB1CC1Q8TDY2 1594 aa21.01■□□□□ 0.95
DDX54-202ENST00000314045 PPARGC1BQ86YN6 1023 aaKnown RBP20.96■□□□□ 0.95
DDX54-202ENST00000314045 NACADO15069 1562 aa20.96■□□□□ 0.95
DDX54-202ENST00000314045 DCAF1Q9Y4B6 1507 aa20.88■□□□□ 0.93
DDX54-202ENST00000314045 CCER1Q8TC90 406 aaPredicted RBP20.78■□□□□ 0.92
DDX54-202ENST00000314045 TRIM26Q12899 539 aaPredicted RBP20.73■□□□□ 0.91
DDX54-202ENST00000314045 RSF1Q96T23 1441 aaPredicted RBP20.69■□□□□ 0.9
DDX54-202ENST00000314045 ZEB1P37275 1124 aaPredicted RBP20.66■□□□□ 0.9
DDX54-202ENST00000314045 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.56■□□□□ 0.88
DDX54-202ENST00000314045 HNRNPUL2Q1KMD3 747 aaKnown RBP20.56■□□□□ 0.88
DDX54-202ENST00000314045 CSRNP3Q8WYN3 585 aa20.55■□□□□ 0.88
DDX54-202ENST00000314045 CECR2Q9BXF3 1484 aa20.49■□□□□ 0.87
DDX54-202ENST00000314045 ITGAEP38570 1179 aa20.48■□□□□ 0.87
DDX54-202ENST00000314045 MYO15BQ96JP2 1530 aa20.42■□□□□ 0.86
DDX54-202ENST00000314045 BAZ1AQ9NRL2 1556 aaPredicted RBP20.37■□□□□ 0.85
DDX54-202ENST00000314045 FBLN2P98095 1184 aa20.34■□□□□ 0.85
DDX54-202ENST00000314045 BAZ1BQ9UIG0 1483 aaKnown RBP20.31■□□□□ 0.84
DDX54-202ENST00000314045 HRCP23327 699 aa20.26■□□□□ 0.83
DDX54-202ENST00000314045 MROH2BQ7Z745 1585 aa20.22■□□□□ 0.83
DDX54-202ENST00000314045 P3H3Q8IVL6 736 aa20.21■□□□□ 0.83
DDX54-202ENST00000314045 FAM50AQ14320 339 aaKnown RBP20.15■□□□□ 0.82
DDX54-202ENST00000314045 MYT1LQ9UL68 1186 aa20.15■□□□□ 0.82
DDX54-202ENST00000314045 WRNQ14191 1432 aaPredicted RBP eCLIP20.09■□□□□ 0.81
DDX54-202ENST00000314045 ARID3CA6NKF2 412 aa20■□□□□ 0.79
DDX54-202ENST00000314045 CCDC88BA6NC98 1476 aa19.96■□□□□ 0.79
DDX54-202ENST00000314045 EEA1Q15075 1411 aa19.94■□□□□ 0.78
DDX54-202ENST00000314045 SMARCA2P51531 1590 aa19.92■□□□□ 0.78
DDX54-202ENST00000314045 CENPBP07199 599 aaPredicted RBP19.91■□□□□ 0.78
DDX54-202ENST00000314045 WIZO95785 1651 aa19.89■□□□□ 0.77
DDX54-202ENST00000314045 TRIM52Q96A61 297 aa19.86■□□□□ 0.77
DDX54-202ENST00000314045 KIF27Q86VH2 1401 aa19.83■□□□□ 0.76
DDX54-202ENST00000314045 CLIP1P30622 1438 aa19.82■□□□□ 0.76
DDX54-202ENST00000314045 PELP1Q8IZL8 1130 aaKnown RBP19.81■□□□□ 0.76
DDX54-202ENST00000314045 CHMP7Q8WUX9 453 aaPredicted RBP19.81■□□□□ 0.76
DDX54-202ENST00000314045 ATAD2BQ9ULI0 1458 aa19.81■□□□□ 0.76
DDX54-202ENST00000314045 CDK11AQ9UQ88 783 aaPredicted RBP19.81■□□□□ 0.76
DDX54-202ENST00000314045 TOP2AP11388 1531 aaKnown RBP19.8■□□□□ 0.76
DDX54-202ENST00000314045 GOLGA3Q08378 1498 aa19.79■□□□□ 0.76
DDX54-202ENST00000314045 SMARCA4P51532 1647 aa19.77■□□□□ 0.76
DDX54-202ENST00000314045 YTHDC1Q96MU7 727 aaKnown RBP19.77■□□□□ 0.76
DDX54-202ENST00000314045 NEUROD1Q13562 356 aa19.74■□□□□ 0.75
DDX54-202ENST00000314045 SOGA1O94964 1423 aa19.73■□□□□ 0.75
DDX54-202ENST00000314045 CEP162Q5TB80 1403 aa19.73■□□□□ 0.75
DDX54-202ENST00000314045 POLR3GLQ9BT43 218 aa19.72■□□□□ 0.75
DDX54-202ENST00000314045 ZNF777Q9ULD5 760 aaPredicted RBP19.71■□□□□ 0.75
DDX54-202ENST00000314045 TNIKQ9UKE5 1360 aa19.7■□□□□ 0.74
DDX54-202ENST00000314045 ABCC8Q09428 1581 aa19.7■□□□□ 0.74
DDX54-202ENST00000314045 CEP164Q9UPV0 1460 aa19.69■□□□□ 0.74
DDX54-202ENST00000314045 ERCC6Q03468 1493 aa19.67■□□□□ 0.74
DDX54-202ENST00000314045 CADPSQ9ULU8 1353 aa19.64■□□□□ 0.73
DDX54-202ENST00000314045 CUX2O14529 1486 aa19.62■□□□□ 0.73
DDX54-202ENST00000314045 PDS5BQ9NTI5 1447 aa19.59■□□□□ 0.73
DDX54-202ENST00000314045 MTUS2Q5JR59 1369 aa19.57■□□□□ 0.72
DDX54-202ENST00000314045 CARMIL1Q5VZK9 1371 aa19.57■□□□□ 0.72
DDX54-202ENST00000314045 DIEXFQ68CQ4 756 aaKnown RBP19.56■□□□□ 0.72
DDX54-202ENST00000314045 CNGB1Q14028 1251 aaPredicted RBP19.53■□□□□ 0.72
DDX54-202ENST00000314045 NPM1P06748 294 aaKnown RBP eCLIP19.52■□□□□ 0.72
DDX54-202ENST00000314045 ZNF326Q5BKZ1 582 aaKnown RBP19.48■□□□□ 0.71
DDX54-202ENST00000314045 CHIC2Q9UKJ5 165 aa19.47■□□□□ 0.71
DDX54-202ENST00000314045 TDRD9Q8NDG6 1382 aaKnown RBP19.46■□□□□ 0.71
DDX54-202ENST00000314045 NCAPD3P42695 1498 aa19.45■□□□□ 0.7
DDX54-202ENST00000314045 NEFLP07196 543 aa19.43■□□□□ 0.7
DDX54-202ENST00000314045 EIF4G1Q04637 1599 aaKnown RBP19.43■□□□□ 0.7
DDX54-202ENST00000314045 ZNF316A6NFI3 1004 aaPredicted RBP19.38■□□□□ 0.69
DDX54-202ENST00000314045 PLEKHD1A6NEE1 506 aa19.38■□□□□ 0.69
DDX54-202ENST00000314045 TSPY4P0CV99 314 aa19.35■□□□□ 0.69
DDX54-202ENST00000314045 TSPY10P0CW01 314 aa19.35■□□□□ 0.69
DDX54-202ENST00000314045 FANCD2Q9BXW9 1451 aa19.33■□□□□ 0.69
DDX54-202ENST00000314045 KCNH8Q96L42 1107 aa19.32■□□□□ 0.68
DDX54-202ENST00000314045 SLC4A1APQ9BWU0 796 aaKnown RBP19.3■□□□□ 0.68
DDX54-202ENST00000314045 RUSC2Q8N2Y8 1516 aa19.28■□□□□ 0.68
DDX54-202ENST00000314045 FHAD1B1AJZ9 1412 aa19.28■□□□□ 0.68
DDX54-202ENST00000314045 RRP7BPQ9NSQ0 103 aa19.26■□□□□ 0.67
DDX54-202ENST00000314045 TONSLQ96HA7 1378 aa19.25■□□□□ 0.67
DDX54-202ENST00000314045 BICRAQ9NZM4 1560 aa19.25■□□□□ 0.67
DDX54-202ENST00000314045 VPS8Q8N3P4 1428 aa19.24■□□□□ 0.67
DDX54-202ENST00000314045 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.22■□□□□ 0.672e-6■■■□□ 15.7
DDX54-202ENST00000314045 CFDP1Q9UEE9 299 aaPredicted RBP19.22■□□□□ 0.67
DDX54-202ENST00000314045 RAPGEF2Q9Y4G8 1499 aa19.2■□□□□ 0.66
DDX54-202ENST00000314045 ANP32CO43423 234 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms