RNA–Protein interactions for RNA: ENST00000493039.5

CSTF1-206, Transcript of cleavage stimulation factor subunit 1, humanhuman

TSL 5

Gene CSTF1, Length 2,234 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF1-206ENST00000493039 NISCHQ9Y2I1 1504 aa22.13■■□□□ 1.13
CSTF1-206ENST00000493039 CCDC180Q9P1Z9 1646 aa19.4■□□□□ 0.7
CSTF1-206ENST00000493039 ABCC9O60706 1549 aa18.76■□□□□ 0.59
CSTF1-206ENST00000493039 ZCCHC6Q5VYS8 1495 aaKnown RBP18.5■□□□□ 0.55
CSTF1-206ENST00000493039 DCAF8L2P0C7V8 631 aa18.38■□□□□ 0.53
CSTF1-206ENST00000493039 DCAF1Q9Y4B6 1507 aa18.29■□□□□ 0.52
CSTF1-206ENST00000493039 MYO15BQ96JP2 1530 aa18.22■□□□□ 0.51
CSTF1-206ENST00000493039 NACADO15069 1562 aa18.2■□□□□ 0.5
CSTF1-206ENST00000493039 RB1CC1Q8TDY2 1594 aa18.11■□□□□ 0.49
CSTF1-206ENST00000493039 SCRIBQ14160 1630 aa17.81■□□□□ 0.44
CSTF1-206ENST00000493039 SHROOM4Q9ULL8 1493 aa17.76■□□□□ 0.43
CSTF1-206ENST00000493039 UNC13AQ9UPW8 1703 aa17.72■□□□□ 0.43
CSTF1-206ENST00000493039 PABPN1Q86U42 306 aaKnown RBP eCLIP17.66■□□□□ 0.42
CSTF1-206ENST00000493039 BICRAQ9NZM4 1560 aa17.65■□□□□ 0.42
CSTF1-206ENST00000493039 CECR2Q9BXF3 1484 aa17.26■□□□□ 0.35
CSTF1-206ENST00000493039 EIF4G1Q04637 1599 aaKnown RBP17.12■□□□□ 0.33
CSTF1-206ENST00000493039 MROH2BQ7Z745 1585 aa17.09■□□□□ 0.33
CSTF1-206ENST00000493039 BAZ1AQ9NRL2 1556 aaPredicted RBP17.08■□□□□ 0.32
CSTF1-206ENST00000493039 SMARCA4P51532 1647 aa17.06■□□□□ 0.32
CSTF1-206ENST00000493039 RSF1Q96T23 1441 aaPredicted RBP17.04■□□□□ 0.32
CSTF1-206ENST00000493039 DNAJC5BQ9UF47 199 aa17.03■□□□□ 0.32
CSTF1-206ENST00000493039 CC2D2AQ9P2K1 1620 aa16.95■□□□□ 0.3
CSTF1-206ENST00000493039 ATAD2BQ9ULI0 1458 aa16.93■□□□□ 0.3
CSTF1-206ENST00000493039 PEG3Q9GZU2 1588 aa16.89■□□□□ 0.3
CSTF1-206ENST00000493039 SUPT5HO00267 1087 aaKnown RBP16.89■□□□□ 0.29
CSTF1-206ENST00000493039 WIZO95785 1651 aa16.89■□□□□ 0.29
CSTF1-206ENST00000493039 NCAPD3P42695 1498 aa16.86■□□□□ 0.29
CSTF1-206ENST00000493039 SMARCA2P51531 1590 aa16.85■□□□□ 0.29
CSTF1-206ENST00000493039 BAZ1BQ9UIG0 1483 aaKnown RBP16.76■□□□□ 0.27
CSTF1-206ENST00000493039 HMGXB3Q12766 1538 aa16.74■□□□□ 0.27
CSTF1-206ENST00000493039 TOP2AP11388 1531 aaKnown RBP16.7■□□□□ 0.26
CSTF1-206ENST00000493039 CCDC88BA6NC98 1476 aa16.57■□□□□ 0.24
CSTF1-206ENST00000493039 CADPSQ9ULU8 1353 aa16.39■□□□□ 0.21
CSTF1-206ENST00000493039 NESP48681 1621 aa16.37■□□□□ 0.21
CSTF1-206ENST00000493039 CFTRP13569 1480 aa16.37■□□□□ 0.21
CSTF1-206ENST00000493039 LAMC3Q9Y6N6 1575 aa16.28■□□□□ 0.2
CSTF1-206ENST00000493039 PDS5BQ9NTI5 1447 aa16.19■□□□□ 0.18
CSTF1-206ENST00000493039 FANCD2Q9BXW9 1451 aa16.18■□□□□ 0.18
CSTF1-206ENST00000493039 PRDM2Q13029 1718 aa16.12■□□□□ 0.17
CSTF1-206ENST00000493039 KIF21AQ7Z4S6 1674 aa16.1■□□□□ 0.17
CSTF1-206ENST00000493039 CEP164Q9UPV0 1460 aa16.09■□□□□ 0.17
CSTF1-206ENST00000493039 ERCC6Q03468 1493 aa16.08■□□□□ 0.16
CSTF1-206ENST00000493039 ABCC8Q09428 1581 aa16.06■□□□□ 0.16
CSTF1-206ENST00000493039 URB2Q14146 1524 aaKnown RBP16.02■□□□□ 0.16
CSTF1-206ENST00000493039 WRNQ14191 1432 aaPredicted RBP eCLIP16.01■□□□□ 0.15
CSTF1-206ENST00000493039 CHIC1Q5VXU3 224 aa16■□□□□ 0.15
CSTF1-206ENST00000493039 MRC2Q9UBG0 1479 aa16■□□□□ 0.15
CSTF1-206ENST00000493039 CUX1P39880 1505 aa16■□□□□ 0.15
CSTF1-206ENST00000493039 THOC2Q8NI27 1593 aaKnown RBP15.97■□□□□ 0.15
CSTF1-206ENST00000493039 TOPBP1Q92547 1522 aa15.96■□□□□ 0.15
CSTF1-206ENST00000493039 SYNJ1O43426 1573 aa15.96■□□□□ 0.15
CSTF1-206ENST00000493039 WDR62O43379 1518 aa15.93■□□□□ 0.14
CSTF1-206ENST00000493039 DNMBPQ6XZF7 1577 aa15.93■□□□□ 0.14
CSTF1-206ENST00000493039 TOP2BQ02880 1626 aa15.91■□□□□ 0.14
CSTF1-206ENST00000493039 TRIM41Q8WV44 630 aa15.9■□□□□ 0.14
CSTF1-206ENST00000493039 BIVM-ERCC5R4GMW8 1640 aa15.88■□□□□ 0.13
CSTF1-206ENST00000493039 POLA1P09884 1462 aaPredicted RBP15.87■□□□□ 0.13
CSTF1-206ENST00000493039 FGD5Q6ZNL6 1462 aa15.87■□□□□ 0.13
CSTF1-206ENST00000493039 CUX2O14529 1486 aa15.86■□□□□ 0.13
CSTF1-206ENST00000493039 RAD54L2Q9Y4B4 1467 aa15.82■□□□□ 0.12
CSTF1-206ENST00000493039 SOGA1O94964 1423 aa15.8■□□□□ 0.12
CSTF1-206ENST00000493039 TARBP1Q13395 1621 aaKnown RBP15.75■□□□□ 0.11
CSTF1-206ENST00000493039 IFT140Q96RY7 1462 aa15.74■□□□□ 0.11
CSTF1-206ENST00000493039 ABCA10Q8WWZ4 1543 aa15.72■□□□□ 0.11
CSTF1-206ENST00000493039 ZNF608Q9ULD9 1512 aaPredicted RBP15.71■□□□□ 0.11
CSTF1-206ENST00000493039 TDRD9Q8NDG6 1382 aaKnown RBP15.71■□□□□ 0.11
CSTF1-206ENST00000493039 RUSC2Q8N2Y8 1516 aa15.7■□□□□ 0.1
CSTF1-206ENST00000493039 AQRO60306 1485 aaKnown RBP eCLIP15.68■□□□□ 0.18e-7■■■■■ 29
CSTF1-206ENST00000493039 WDR97A6NE52 1622 aa15.66■□□□□ 0.1
CSTF1-206ENST00000493039 KIF27Q86VH2 1401 aa15.63■□□□□ 0.09
CSTF1-206ENST00000493039 GAPVD1Q14C86 1478 aa15.61■□□□□ 0.09
CSTF1-206ENST00000493039 FAM9AQ8IZU1 332 aaPredicted RBP15.61■□□□□ 0.09
CSTF1-206ENST00000493039 ABCA5Q8WWZ7 1642 aa15.61■□□□□ 0.09
CSTF1-206ENST00000493039 IGF1RP08069 1367 aa15.6■□□□□ 0.09
CSTF1-206ENST00000493039 EIF4G3O43432 1585 aaKnown RBP15.59■□□□□ 0.09
CSTF1-206ENST00000493039 CSRNP3Q8WYN3 585 aa15.55■□□□□ 0.08
CSTF1-206ENST00000493039 GRIN2BQ13224 1484 aa15.54■□□□□ 0.08
CSTF1-206ENST00000493039 EEA1Q15075 1411 aa15.54■□□□□ 0.08
CSTF1-206ENST00000493039 ERICH3Q5RHP9 1530 aa15.51■□□□□ 0.07
CSTF1-206ENST00000493039 SNAPC4Q5SXM2 1469 aa15.49■□□□□ 0.07
CSTF1-206ENST00000493039 PBRM1Q86U86 1689 aa15.48■□□□□ 0.07
CSTF1-206ENST00000493039 CARMIL1Q5VZK9 1371 aa15.47■□□□□ 0.07
CSTF1-206ENST00000493039 PRXQ9BXM0 1461 aa15.46■□□□□ 0.07
CSTF1-206ENST00000493039 MAGI1Q96QZ7 1491 aaPredicted RBP15.45■□□□□ 0.06
CSTF1-206ENST00000493039 FHAD1B1AJZ9 1412 aa15.44■□□□□ 0.06
CSTF1-206ENST00000493039 ADAMTS12P58397 1594 aa15.42■□□□□ 0.06
CSTF1-206ENST00000493039 SYNJ2O15056 1496 aa15.4■□□□□ 0.06
CSTF1-206ENST00000493039 RAPGEF2Q9Y4G8 1499 aa15.4■□□□□ 0.06
CSTF1-206ENST00000493039 CUL7Q14999 1698 aa15.39■□□□□ 0.05
CSTF1-206ENST00000493039 FBLN2P98095 1184 aa15.39■□□□□ 0.05
CSTF1-206ENST00000493039 CHMP7Q8WUX9 453 aaPredicted RBP15.39■□□□□ 0.05
CSTF1-206ENST00000493039 EHMT2Q96KQ7 1210 aa15.39■□□□□ 0.05
CSTF1-206ENST00000493039 LOC105371045A0A1W2PR82 267 aa15.39■□□□□ 0.05
CSTF1-206ENST00000493039 SLC24A1O60721 1099 aa15.36■□□□□ 0.05
CSTF1-206ENST00000493039 GRIN2AQ12879 1464 aa15.36■□□□□ 0.05
CSTF1-206ENST00000493039 KIF21BO75037 1637 aa15.35■□□□□ 0.05
CSTF1-206ENST00000493039 GOLGA3Q08378 1498 aa15.3■□□□□ 0.04
CSTF1-206ENST00000493039 CHD1O14646 1710 aa15.3■□□□□ 0.04
CSTF1-206ENST00000493039 NUP160Q12769 1436 aa15.29■□□□□ 0.04
CSTF1-206ENST00000493039 UBTFP17480 764 aaKnown RBP15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms