RNA–Protein interactions for RNA: ENST00000217109.8

CSTF1-201, Transcript of cleavage stimulation factor subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSTF1, Length 4,290 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF1-201ENST00000217109 NISCHQ9Y2I1 1504 aa18.65■□□□□ 0.58
CSTF1-201ENST00000217109 DCAF8L2P0C7V8 631 aa17.16■□□□□ 0.34
CSTF1-201ENST00000217109 SHROOM4Q9ULL8 1493 aa17■□□□□ 0.31
CSTF1-201ENST00000217109 SUPT5HO00267 1087 aaKnown RBP16.92■□□□□ 0.3
CSTF1-201ENST00000217109 EHMT2Q96KQ7 1210 aa15.96■□□□□ 0.15
CSTF1-201ENST00000217109 PCGF6Q9BYE7 350 aa15.89■□□□□ 0.13
CSTF1-201ENST00000217109 CHIC1Q5VXU3 224 aa15.83■□□□□ 0.12
CSTF1-201ENST00000217109 FAM9AQ8IZU1 332 aaPredicted RBP15.79■□□□□ 0.12
CSTF1-201ENST00000217109 LOC105371045A0A1W2PR82 267 aa15.66■□□□□ 0.1
CSTF1-201ENST00000217109 ZCCHC6Q5VYS8 1495 aaKnown RBP15.63■□□□□ 0.09
CSTF1-201ENST00000217109 TRIM41Q8WV44 630 aa15.61■□□□□ 0.09
CSTF1-201ENST00000217109 HRCP23327 699 aa15.46■□□□□ 0.07
CSTF1-201ENST00000217109 TTBK1Q5TCY1 1321 aaPredicted RBP15.4■□□□□ 0.06
CSTF1-201ENST00000217109 CCDC180Q9P1Z9 1646 aa15.39■□□□□ 0.05
CSTF1-201ENST00000217109 PPARGC1BQ86YN6 1023 aaKnown RBP15.35■□□□□ 0.05
CSTF1-201ENST00000217109 TRIM26Q12899 539 aaPredicted RBP15.3■□□□□ 0.04
CSTF1-201ENST00000217109 ABCC9O60706 1549 aa15.29■□□□□ 0.04
CSTF1-201ENST00000217109 MYO15BQ96JP2 1530 aa15.28■□□□□ 0.04
CSTF1-201ENST00000217109 RANGAP1P46060 587 aaPredicted RBP15.13■□□□□ 0.01
CSTF1-201ENST00000217109 SCRIBQ14160 1630 aa15.11■□□□□ 0.01
CSTF1-201ENST00000217109 UBTFP17480 764 aaKnown RBP15.1■□□□□ 0.01
CSTF1-201ENST00000217109 ZEB1P37275 1124 aaPredicted RBP15.1■□□□□ 0.01
CSTF1-201ENST00000217109 CCER1Q8TC90 406 aaPredicted RBP15.09■□□□□ 0.01
CSTF1-201ENST00000217109 APLP2Q06481 763 aa15□□□□□ -0.01
CSTF1-201ENST00000217109 PABPN1Q86U42 306 aaKnown RBP eCLIP14.99□□□□□ -0.01
CSTF1-201ENST00000217109 RSF1Q96T23 1441 aaPredicted RBP14.94□□□□□ -0.02
CSTF1-201ENST00000217109 DCAF1Q9Y4B6 1507 aa14.91□□□□□ -0.02
CSTF1-201ENST00000217109 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.91□□□□□ -0.02
CSTF1-201ENST00000217109 CECR2Q9BXF3 1484 aa14.74□□□□□ -0.05
CSTF1-201ENST00000217109 HNRNPUL2Q1KMD3 747 aaKnown RBP14.74□□□□□ -0.05
CSTF1-201ENST00000217109 YTHDC1Q96MU7 727 aaKnown RBP14.66□□□□□ -0.06
CSTF1-201ENST00000217109 CSRNP3Q8WYN3 585 aa14.65□□□□□ -0.06
CSTF1-201ENST00000217109 RB1CC1Q8TDY2 1594 aa14.64□□□□□ -0.07
CSTF1-201ENST00000217109 CENPBP07199 599 aaPredicted RBP14.64□□□□□ -0.07
CSTF1-201ENST00000217109 ATP1B4Q9UN42 357 aaPredicted RBP14.64□□□□□ -0.07
CSTF1-201ENST00000217109 NACADO15069 1562 aa14.6□□□□□ -0.07
CSTF1-201ENST00000217109 MROH2BQ7Z745 1585 aa14.58□□□□□ -0.08
CSTF1-201ENST00000217109 ITGAEP38570 1179 aa14.56□□□□□ -0.08
CSTF1-201ENST00000217109 DIEXFQ68CQ4 756 aaKnown RBP14.56□□□□□ -0.08
CSTF1-201ENST00000217109 WIZO95785 1651 aa14.42□□□□□ -0.1
CSTF1-201ENST00000217109 BAZ1AQ9NRL2 1556 aaPredicted RBP14.4□□□□□ -0.1
CSTF1-201ENST00000217109 CEP162Q5TB80 1403 aa14.37□□□□□ -0.11
CSTF1-201ENST00000217109 SOGA1O94964 1423 aa14.36□□□□□ -0.11
CSTF1-201ENST00000217109 ABCC8Q09428 1581 aa14.35□□□□□ -0.11
CSTF1-201ENST00000217109 CCDC88BA6NC98 1476 aa14.33□□□□□ -0.12
CSTF1-201ENST00000217109 ZNF316A6NFI3 1004 aaPredicted RBP14.32□□□□□ -0.12
CSTF1-201ENST00000217109 GTF3C3Q9Y5Q9 886 aa14.31□□□□□ -0.12
CSTF1-201ENST00000217109 PELP1Q8IZL8 1130 aaKnown RBP14.29□□□□□ -0.12
CSTF1-201ENST00000217109 WRNQ14191 1432 aaPredicted RBP eCLIP14.29□□□□□ -0.12
CSTF1-201ENST00000217109 ACIN1Q9UKV3 1341 aaKnown RBP14.27□□□□□ -0.13
CSTF1-201ENST00000217109 TNIKQ9UKE5 1360 aa14.26□□□□□ -0.13
CSTF1-201ENST00000217109 SCAF1Q9H7N4 1312 aaKnown RBP14.25□□□□□ -0.13
CSTF1-201ENST00000217109 P3H3Q8IVL6 736 aa14.24□□□□□ -0.13
CSTF1-201ENST00000217109 CLIP1P30622 1438 aa14.24□□□□□ -0.13
CSTF1-201ENST00000217109 FAM50AQ14320 339 aaKnown RBP14.24□□□□□ -0.13
CSTF1-201ENST00000217109 NEUROD1Q13562 356 aa14.23□□□□□ -0.13
CSTF1-201ENST00000217109 GOLGA3Q08378 1498 aa14.21□□□□□ -0.13
CSTF1-201ENST00000217109 EEA1Q15075 1411 aa14.21□□□□□ -0.13
CSTF1-201ENST00000217109 BAZ1BQ9UIG0 1483 aaKnown RBP14.17□□□□□ -0.14
CSTF1-201ENST00000217109 RUSC2Q8N2Y8 1516 aa14.16□□□□□ -0.14
CSTF1-201ENST00000217109 TOP2AP11388 1531 aaKnown RBP14.16□□□□□ -0.14
CSTF1-201ENST00000217109 CEP164Q9UPV0 1460 aa14.1□□□□□ -0.15
CSTF1-201ENST00000217109 SMARCA4P51532 1647 aa14.1□□□□□ -0.15
CSTF1-201ENST00000217109 MIER1Q8N108 512 aa14.09□□□□□ -0.15
CSTF1-201ENST00000217109 SMARCA2P51531 1590 aa14.02□□□□□ -0.16
CSTF1-201ENST00000217109 ARID3CA6NKF2 412 aa13.99□□□□□ -0.17
CSTF1-201ENST00000217109 NEFLP07196 543 aa13.98□□□□□ -0.17
CSTF1-201ENST00000217109 KANK4Q5T7N3 995 aaPredicted RBP13.97□□□□□ -0.17
CSTF1-201ENST00000217109 ATAD2BQ9ULI0 1458 aa13.97□□□□□ -0.17
CSTF1-201ENST00000217109 CNGB1Q14028 1251 aaPredicted RBP13.95□□□□□ -0.18
CSTF1-201ENST00000217109 VPS8Q8N3P4 1428 aa13.95□□□□□ -0.18
CSTF1-201ENST00000217109 KIF27Q86VH2 1401 aa13.95□□□□□ -0.18
CSTF1-201ENST00000217109 RAPGEF2Q9Y4G8 1499 aa13.94□□□□□ -0.18
CSTF1-201ENST00000217109 TRIM52Q96A61 297 aa13.93□□□□□ -0.18
CSTF1-201ENST00000217109 BCANQ96GW7 911 aa13.91□□□□□ -0.18
CSTF1-201ENST00000217109 POLR3GLQ9BT43 218 aa13.9□□□□□ -0.18
CSTF1-201ENST00000217109 HIRIP3Q9BW71 556 aaPredicted RBP13.9□□□□□ -0.18
CSTF1-201ENST00000217109 DDX10Q13206 875 aaKnown RBP13.89□□□□□ -0.19
CSTF1-201ENST00000217109 CUX2O14529 1486 aa13.82□□□□□ -0.2
CSTF1-201ENST00000217109 ANP32CO43423 234 aa13.82□□□□□ -0.2
CSTF1-201ENST00000217109 CHIC2Q9UKJ5 165 aa13.81□□□□□ -0.2
CSTF1-201ENST00000217109 SIN3AQ96ST3 1273 aa13.81□□□□□ -0.2
CSTF1-201ENST00000217109 FBLN2P98095 1184 aa13.8□□□□□ -0.2
CSTF1-201ENST00000217109 CCNB3Q8WWL7 1395 aa13.8□□□□□ -0.2
CSTF1-201ENST00000217109 CARMIL1Q5VZK9 1371 aa13.79□□□□□ -0.2
CSTF1-201ENST00000217109 SYNJ1O43426 1573 aa13.77□□□□□ -0.2
CSTF1-201ENST00000217109 MTUS2Q5JR59 1369 aa13.76□□□□□ -0.21
CSTF1-201ENST00000217109 TONSLQ96HA7 1378 aa13.75□□□□□ -0.21
CSTF1-201ENST00000217109 ZNF326Q5BKZ1 582 aaKnown RBP13.74□□□□□ -0.21
CSTF1-201ENST00000217109 CLSPNQ9HAW4 1339 aa13.72□□□□□ -0.21
CSTF1-201ENST00000217109 RRP7BPQ9NSQ0 103 aa13.71□□□□□ -0.22
CSTF1-201ENST00000217109 BICRAQ9NZM4 1560 aa13.7□□□□□ -0.22
CSTF1-201ENST00000217109 ZNF777Q9ULD5 760 aaPredicted RBP13.69□□□□□ -0.22
CSTF1-201ENST00000217109 FKBP8Q14318 412 aa13.68□□□□□ -0.22
CSTF1-201ENST00000217109 ERICH6Q7L0X2 663 aa13.68□□□□□ -0.22
CSTF1-201ENST00000217109 DHX57Q6P158 1386 aaKnown RBP13.67□□□□□ -0.22
CSTF1-201ENST00000217109 KIF21BO75037 1637 aa13.67□□□□□ -0.22
CSTF1-201ENST00000217109 RAB3GAP2Q9H2M9 1393 aa13.66□□□□□ -0.22
CSTF1-201ENST00000217109 CADPSQ9ULU8 1353 aa13.66□□□□□ -0.22
CSTF1-201ENST00000217109 MYT1Q01538 1121 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms