RNA–Protein interactions for RNA: ENST00000549271.1

DDX54-206, Transcript of DEAD-box helicase 54, humanhuman

TSL 2

Gene DDX54, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-206ENST00000549271 NISCHQ9Y2I1 1504 aa31.34■■■□□ 2.61
DDX54-206ENST00000549271 ABCC9O60706 1549 aa29■■■□□ 2.23
DDX54-206ENST00000549271 CCDC180Q9P1Z9 1646 aa28.46■■■□□ 2.15
DDX54-206ENST00000549271 DNAJC5BQ9UF47 199 aa27.82■■■□□ 2.04
DDX54-206ENST00000549271 RB1CC1Q8TDY2 1594 aa27.36■■□□□ 1.97
DDX54-206ENST00000549271 NACADO15069 1562 aa27.02■■□□□ 1.92
DDX54-206ENST00000549271 PABPN1Q86U42 306 aaKnown RBP eCLIP26.87■■□□□ 1.89
DDX54-206ENST00000549271 UNC13AQ9UPW8 1703 aa26.82■■□□□ 1.88
DDX54-206ENST00000549271 BICRAQ9NZM4 1560 aa26.63■■□□□ 1.85
DDX54-206ENST00000549271 DCAF8L2P0C7V8 631 aa26.59■■□□□ 1.85
DDX54-206ENST00000549271 MYO15BQ96JP2 1530 aa26.47■■□□□ 1.83
DDX54-206ENST00000549271 CC2D2AQ9P2K1 1620 aa26.21■■□□□ 1.79
DDX54-206ENST00000549271 CECR2Q9BXF3 1484 aa26.21■■□□□ 1.79
DDX54-206ENST00000549271 SHROOM4Q9ULL8 1493 aa26.19■■□□□ 1.78
DDX54-206ENST00000549271 DNAJC5Q9H3Z4 198 aa26.02■■□□□ 1.76
DDX54-206ENST00000549271 EIF4G1Q04637 1599 aaKnown RBP26■■□□□ 1.75
DDX54-206ENST00000549271 DCAF1Q9Y4B6 1507 aa25.88■■□□□ 1.73
DDX54-206ENST00000549271 ZCCHC6Q5VYS8 1495 aaKnown RBP25.85■■□□□ 1.73
DDX54-206ENST00000549271 SCRIBQ14160 1630 aa25.82■■□□□ 1.72
DDX54-206ENST00000549271 CUX2O14529 1486 aa25.31■■□□□ 1.64
DDX54-206ENST00000549271 ERCC6Q03468 1493 aa25.07■■□□□ 1.6
DDX54-206ENST00000549271 NCAPD3P42695 1498 aa24.96■■□□□ 1.59
DDX54-206ENST00000549271 ATAD2BQ9ULI0 1458 aa24.77■■□□□ 1.56
DDX54-206ENST00000549271 NESP48681 1621 aa24.75■■□□□ 1.55
DDX54-206ENST00000549271 HMGXB3Q12766 1538 aa24.72■■□□□ 1.55
DDX54-206ENST00000549271 THOC2Q8NI27 1593 aaKnown RBP24.68■■□□□ 1.54
DDX54-206ENST00000549271 SMARCA2P51531 1590 aa24.67■■□□□ 1.54
DDX54-206ENST00000549271 SMARCA4P51532 1647 aa24.6■■□□□ 1.53
DDX54-206ENST00000549271 TRIM41Q8WV44 630 aa24.52■■□□□ 1.52
DDX54-206ENST00000549271 LAMC3Q9Y6N6 1575 aa24.5■■□□□ 1.51
DDX54-206ENST00000549271 BAZ1BQ9UIG0 1483 aaKnown RBP24.47■■□□□ 1.51
DDX54-206ENST00000549271 KIF21AQ7Z4S6 1674 aa24.45■■□□□ 1.5
DDX54-206ENST00000549271 PEG3Q9GZU2 1588 aa24.4■■□□□ 1.5
DDX54-206ENST00000549271 BAZ1AQ9NRL2 1556 aaPredicted RBP24.37■■□□□ 1.49
DDX54-206ENST00000549271 PDS5BQ9NTI5 1447 aa24.34■■□□□ 1.49
DDX54-206ENST00000549271 MRC2Q9UBG0 1479 aa24.19■■□□□ 1.46
DDX54-206ENST00000549271 WDR62O43379 1518 aa24.18■■□□□ 1.46
DDX54-206ENST00000549271 MROH2BQ7Z745 1585 aa24.14■■□□□ 1.45
DDX54-206ENST00000549271 CADPSQ9ULU8 1353 aa24.14■■□□□ 1.45
DDX54-206ENST00000549271 OSCARQ8IYS5 282 aa23.98■■□□□ 1.43
DDX54-206ENST00000549271 CEP164Q9UPV0 1460 aa23.94■■□□□ 1.42
DDX54-206ENST00000549271 FANCD2Q9BXW9 1451 aa23.87■■□□□ 1.41
DDX54-206ENST00000549271 WIZO95785 1651 aa23.83■■□□□ 1.4
DDX54-206ENST00000549271 RIMBP3CA6NJZ7 1639 aa23.81■■□□□ 1.4
DDX54-206ENST00000549271 RIMBP3BA6NNM3 1639 aa23.81■■□□□ 1.4
DDX54-206ENST00000549271 RIMBP3Q9UFD9 1639 aa23.81■■□□□ 1.4
DDX54-206ENST00000549271 CFTRP13569 1480 aa23.75■■□□□ 1.39
DDX54-206ENST00000549271 URB2Q14146 1524 aaKnown RBP23.74■■□□□ 1.39
DDX54-206ENST00000549271 ARHGEF11O15085 1522 aa23.65■■□□□ 1.38
DDX54-206ENST00000549271 ZNF608Q9ULD9 1512 aaPredicted RBP23.53■■□□□ 1.36
DDX54-206ENST00000549271 PRDM2Q13029 1718 aa23.52■■□□□ 1.36
DDX54-206ENST00000549271 IFT140Q96RY7 1462 aa23.5■■□□□ 1.35
DDX54-206ENST00000549271 TOP2AP11388 1531 aaKnown RBP23.48■■□□□ 1.35
DDX54-206ENST00000549271 CYB5RLQ6IPT4 315 aa23.45■■□□□ 1.34
DDX54-206ENST00000549271 RSF1Q96T23 1441 aaPredicted RBP23.39■■□□□ 1.33
DDX54-206ENST00000549271 EIF4G3O43432 1585 aaKnown RBP23.39■■□□□ 1.33
DDX54-206ENST00000549271 ARAP1Q96P48 1450 aa23.38■■□□□ 1.33
DDX54-206ENST00000549271 TRHP20396 242 aaPredicted RBP23.38■■□□□ 1.33
DDX54-206ENST00000549271 TOPBP1Q92547 1522 aa23.36■■□□□ 1.33
DDX54-206ENST00000549271 CHD1O14646 1710 aa23.36■■□□□ 1.33
DDX54-206ENST00000549271 ABCC8Q09428 1581 aa23.25■■□□□ 1.31
DDX54-206ENST00000549271 TARBP1Q13395 1621 aaKnown RBP23.23■■□□□ 1.31
DDX54-206ENST00000549271 AQRO60306 1485 aaKnown RBP eCLIP23.22■■□□□ 1.31
DDX54-206ENST00000549271 DNMBPQ6XZF7 1577 aa23.22■■□□□ 1.31
DDX54-206ENST00000549271 CCDC88BA6NC98 1476 aa23.2■■□□□ 1.3
DDX54-206ENST00000549271 AEBP2Q6ZN18 517 aaPredicted RBP23.16■■□□□ 1.3
DDX54-206ENST00000549271 FBLN2P98095 1184 aa23.12■■□□□ 1.29
DDX54-206ENST00000549271 CLASP1Q7Z460 1538 aa23.08■■□□□ 1.28
DDX54-206ENST00000549271 POLA1P09884 1462 aaPredicted RBP23.07■■□□□ 1.28
DDX54-206ENST00000549271 RAD54L2Q9Y4B4 1467 aa22.98■■□□□ 1.27
DDX54-206ENST00000549271 SNAPC4Q5SXM2 1469 aa22.97■■□□□ 1.27
DDX54-206ENST00000549271 SYNJ1O43426 1573 aa22.97■■□□□ 1.27
DDX54-206ENST00000549271 TDRD9Q8NDG6 1382 aaKnown RBP22.96■■□□□ 1.27
DDX54-206ENST00000549271 WDR97A6NE52 1622 aa22.95■■□□□ 1.26
DDX54-206ENST00000549271 SOGA1O94964 1423 aa22.92■■□□□ 1.26
DDX54-206ENST00000549271 MAGI1Q96QZ7 1491 aaPredicted RBP22.9■■□□□ 1.26
DDX54-206ENST00000549271 CHMP7Q8WUX9 453 aaPredicted RBP22.87■■□□□ 1.25
DDX54-206ENST00000549271 SYNJ2O15056 1496 aa22.83■■□□□ 1.25
DDX54-206ENST00000549271 GAPVD1Q14C86 1478 aa22.83■■□□□ 1.25
DDX54-206ENST00000549271 GRIN2BQ13224 1484 aa22.82■■□□□ 1.24
DDX54-206ENST00000549271 FGD5Q6ZNL6 1462 aa22.82■■□□□ 1.24
DDX54-206ENST00000549271 PBRM1Q86U86 1689 aa22.73■■□□□ 1.23
DDX54-206ENST00000549271 CUX1P39880 1505 aa22.72■■□□□ 1.23
DDX54-206ENST00000549271 ERCC6L2Q5T890 1561 aa22.65■■□□□ 1.22
DDX54-206ENST00000549271 ABCA5Q8WWZ7 1642 aa22.6■■□□□ 1.21
DDX54-206ENST00000549271 KIF13AQ9H1H9 1805 aa22.59■■□□□ 1.21
DDX54-206ENST00000549271 ABCA10Q8WWZ4 1543 aa22.55■■□□□ 1.2
DDX54-206ENST00000549271 CEP170Q5SW79 1584 aa22.55■■□□□ 1.2
DDX54-206ENST00000549271 GRIN2AQ12879 1464 aa22.54■■□□□ 1.2
DDX54-206ENST00000549271 SHROOM2Q13796 1616 aa22.52■■□□□ 1.2
DDX54-206ENST00000549271 NUP160Q12769 1436 aa22.49■■□□□ 1.19
DDX54-206ENST00000549271 ADAMTS12P58397 1594 aa22.46■■□□□ 1.19
DDX54-206ENST00000549271 ABCC10Q5T3U5 1492 aa22.34■■□□□ 1.17
DDX54-206ENST00000549271 FHAD1B1AJZ9 1412 aa22.33■■□□□ 1.17
DDX54-206ENST00000549271 KDM4FA0A1W2PPD8 638 aa22.3■■□□□ 1.16
DDX54-206ENST00000549271 PRG4Q92954 1404 aaPredicted RBP22.3■■□□□ 1.16
DDX54-206ENST00000549271 WRNQ14191 1432 aaPredicted RBP eCLIP22.29■■□□□ 1.16
DDX54-206ENST00000549271 MAPKBP1O60336 1514 aa22.28■■□□□ 1.16
DDX54-206ENST00000549271 FAM69CQ0P6D2 419 aa22.28■■□□□ 1.16
DDX54-206ENST00000549271 ILDR1Q86SU0 546 aaPredicted RBP22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms