RNA–Protein interactions for RNA: ENST00000593641.3

SSBP4-203, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 900 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-203ENST00000593641 NISCHQ9Y2I1 1504 aa56.78■■■■■ 6.68
SSBP4-203ENST00000593641 CCDC180Q9P1Z9 1646 aa51.03■■■■■ 5.76
SSBP4-203ENST00000593641 ABCC9O60706 1549 aa50.97■■■■■ 5.75
SSBP4-203ENST00000593641 RB1CC1Q8TDY2 1594 aa48.57■■■■■ 5.37
SSBP4-203ENST00000593641 NACADO15069 1562 aa48.22■■■■■ 5.31
SSBP4-203ENST00000593641 DCAF8L2P0C7V8 631 aa47.93■■■■■ 5.26
SSBP4-203ENST00000593641 DNAJC5BQ9UF47 199 aa47.7■■■■■ 5.23
SSBP4-203ENST00000593641 MYO15BQ96JP2 1530 aa47.53■■■■■ 5.2
SSBP4-203ENST00000593641 UNC13AQ9UPW8 1703 aa47.49■■■■■ 5.19
SSBP4-203ENST00000593641 PABPN1Q86U42 306 aaKnown RBP eCLIP47.41■■■■■ 5.183e-7■■■■□ 21.2
SSBP4-203ENST00000593641 BICRAQ9NZM4 1560 aa47.07■■■■■ 5.13
SSBP4-203ENST00000593641 ZCCHC6Q5VYS8 1495 aaKnown RBP47.07■■■■■ 5.13
SSBP4-203ENST00000593641 DCAF1Q9Y4B6 1507 aa46.92■■■■■ 5.1
SSBP4-203ENST00000593641 SHROOM4Q9ULL8 1493 aa46.52■■■■■ 5.04
SSBP4-203ENST00000593641 SCRIBQ14160 1630 aa46.47■■■■■ 5.03
SSBP4-203ENST00000593641 CC2D2AQ9P2K1 1620 aa46.07■■■■■ 4.97
SSBP4-203ENST00000593641 EIF4G1Q04637 1599 aaKnown RBP45.97■■■■■ 4.95
SSBP4-203ENST00000593641 CECR2Q9BXF3 1484 aa45.93■■■■■ 4.94
SSBP4-203ENST00000593641 NCAPD3P42695 1498 aa44.47■■■■■ 4.71
SSBP4-203ENST00000593641 ATAD2BQ9ULI0 1458 aa44.34■■■■■ 4.69
SSBP4-203ENST00000593641 SMARCA4P51532 1647 aa44.32■■■■■ 4.69
SSBP4-203ENST00000593641 SMARCA2P51531 1590 aa44.26■■■■■ 4.68
SSBP4-203ENST00000593641 HMGXB3Q12766 1538 aa44.19■■■■■ 4.66
SSBP4-203ENST00000593641 BAZ1AQ9NRL2 1556 aaPredicted RBP44.12■■■■■ 4.65
SSBP4-203ENST00000593641 ERCC6Q03468 1493 aa44.07■■■■■ 4.65
SSBP4-203ENST00000593641 CUX2O14529 1486 aa43.97■■■■■ 4.63
SSBP4-203ENST00000593641 BAZ1BQ9UIG0 1483 aaKnown RBP43.95■■■■■ 4.63
SSBP4-203ENST00000593641 PEG3Q9GZU2 1588 aa43.88■■■■■ 4.62
SSBP4-203ENST00000593641 DNAJC5Q9H3Z4 198 aa43.88■■■■■ 4.62
SSBP4-203ENST00000593641 NESP48681 1621 aa43.76■■■■■ 4.6
SSBP4-203ENST00000593641 MROH2BQ7Z745 1585 aa43.73■■■■■ 4.59
SSBP4-203ENST00000593641 LAMC3Q9Y6N6 1575 aa43.53■■■■■ 4.56
SSBP4-203ENST00000593641 THOC2Q8NI27 1593 aaKnown RBP43.37■■■■■ 4.53
SSBP4-203ENST00000593641 KIF21AQ7Z4S6 1674 aa43.27■■■■■ 4.52
SSBP4-203ENST00000593641 PDS5BQ9NTI5 1447 aa43.26■■■■■ 4.52
SSBP4-203ENST00000593641 WIZO95785 1651 aa43.24■■■■■ 4.51
SSBP4-203ENST00000593641 CADPSQ9ULU8 1353 aa43.12■■■■■ 4.49
SSBP4-203ENST00000593641 MRC2Q9UBG0 1479 aa42.88■■■■■ 4.46
SSBP4-203ENST00000593641 RSF1Q96T23 1441 aaPredicted RBP42.8■■■■■ 4.44
SSBP4-203ENST00000593641 WDR62O43379 1518 aa42.78■■■■■ 4.44
SSBP4-203ENST00000593641 CEP164Q9UPV0 1460 aa42.73■■■■■ 4.43
SSBP4-203ENST00000593641 TOP2AP11388 1531 aaKnown RBP42.71■■■■■ 4.43
SSBP4-203ENST00000593641 FANCD2Q9BXW9 1451 aa42.66■■■■■ 4.42
SSBP4-203ENST00000593641 CFTRP13569 1480 aa42.63■■■■■ 4.42
SSBP4-203ENST00000593641 PRDM2Q13029 1718 aa42.33■■■■■ 4.37
SSBP4-203ENST00000593641 URB2Q14146 1524 aaKnown RBP42.27■■■■■ 4.36
SSBP4-203ENST00000593641 CCDC88BA6NC98 1476 aa42.17■■■■■ 4.34
SSBP4-203ENST00000593641 TRIM41Q8WV44 630 aa42■■■■■ 4.31
SSBP4-203ENST00000593641 OSCARQ8IYS5 282 aa41.92■■■■■ 4.3
SSBP4-203ENST00000593641 IFT140Q96RY7 1462 aa41.86■■■■■ 4.29
SSBP4-203ENST00000593641 TOPBP1Q92547 1522 aa41.84■■■■■ 4.29
SSBP4-203ENST00000593641 ABCC8Q09428 1581 aa41.79■■■■■ 4.28
SSBP4-203ENST00000593641 ZNF608Q9ULD9 1512 aaPredicted RBP41.74■■■■■ 4.27
SSBP4-203ENST00000593641 DNMBPQ6XZF7 1577 aa41.71■■■■■ 4.27
SSBP4-203ENST00000593641 EIF4G3O43432 1585 aaKnown RBP41.59■■■■■ 4.25
SSBP4-203ENST00000593641 TARBP1Q13395 1621 aaKnown RBP41.47■■■■■ 4.23
SSBP4-203ENST00000593641 POLA1P09884 1462 aaPredicted RBP41.41■■■■■ 4.22
SSBP4-203ENST00000593641 RIMBP3CA6NJZ7 1639 aa41.41■■■■■ 4.22
SSBP4-203ENST00000593641 RIMBP3BA6NNM3 1639 aa41.41■■■■■ 4.22
SSBP4-203ENST00000593641 RIMBP3Q9UFD9 1639 aa41.41■■■■■ 4.22
SSBP4-203ENST00000593641 AQRO60306 1485 aaKnown RBP eCLIP41.37■■■■■ 4.214e-7■■■■■ 57.1
SSBP4-203ENST00000593641 CHD1O14646 1710 aa41.3■■■■■ 4.2
SSBP4-203ENST00000593641 ARHGEF11O15085 1522 aa41.28■■■■■ 4.2
SSBP4-203ENST00000593641 RAD54L2Q9Y4B4 1467 aa41.23■■■■■ 4.19
SSBP4-203ENST00000593641 SOGA1O94964 1423 aa41.21■■■■■ 4.19
SSBP4-203ENST00000593641 FGD5Q6ZNL6 1462 aa41.15■■■■■ 4.18
SSBP4-203ENST00000593641 FBLN2P98095 1184 aa41.14■■■■■ 4.18
SSBP4-203ENST00000593641 TDRD9Q8NDG6 1382 aaKnown RBP41.12■■■■■ 4.17
SSBP4-203ENST00000593641 WDR97A6NE52 1622 aa41.11■■■■■ 4.17
SSBP4-203ENST00000593641 CUX1P39880 1505 aa41.1■■■■■ 4.17
SSBP4-203ENST00000593641 SNAPC4Q5SXM2 1469 aa40.99■■■■■ 4.15
SSBP4-203ENST00000593641 CYB5RLQ6IPT4 315 aa40.94■■■■■ 4.14
SSBP4-203ENST00000593641 SUPT5HO00267 1087 aaKnown RBP40.93■■■■■ 4.14
SSBP4-203ENST00000593641 MAGI1Q96QZ7 1491 aaPredicted RBP40.9■■■■■ 4.14
SSBP4-203ENST00000593641 GRIN2BQ13224 1484 aa40.88■■■■■ 4.13
SSBP4-203ENST00000593641 ARAP1Q96P48 1450 aa40.85■■■■■ 4.13
SSBP4-203ENST00000593641 CHMP7Q8WUX9 453 aaPredicted RBP40.83■■■■■ 4.13
SSBP4-203ENST00000593641 SYNJ1O43426 1573 aa40.81■■■■■ 4.12
SSBP4-203ENST00000593641 PBRM1Q86U86 1689 aa40.78■■■■■ 4.12
SSBP4-203ENST00000593641 CLASP1Q7Z460 1538 aa40.77■■■■■ 4.12
SSBP4-203ENST00000593641 SYNJ2O15056 1496 aa40.75■■■■■ 4.11
SSBP4-203ENST00000593641 GAPVD1Q14C86 1478 aa40.73■■■■■ 4.11
SSBP4-203ENST00000593641 ABCA10Q8WWZ4 1543 aa40.69■■■■■ 4.1
SSBP4-203ENST00000593641 ABCA5Q8WWZ7 1642 aa40.65■■■■■ 4.1
SSBP4-203ENST00000593641 WRNQ14191 1432 aaPredicted RBP eCLIP40.53■■■■■ 4.08
SSBP4-203ENST00000593641 TRHP20396 242 aaPredicted RBP40.53■■■■■ 4.08
SSBP4-203ENST00000593641 BIVM-ERCC5R4GMW8 1640 aa40.49■■■■■ 4.07
SSBP4-203ENST00000593641 TOP2BQ02880 1626 aa40.48■■■■■ 4.07
SSBP4-203ENST00000593641 GRIN2AQ12879 1464 aa40.36■■■■■ 4.05
SSBP4-203ENST00000593641 ADAMTS12P58397 1594 aa40.35■■■■■ 4.05
SSBP4-203ENST00000593641 FHAD1B1AJZ9 1412 aa40.21■■■■■ 4.03
SSBP4-203ENST00000593641 CEP170Q5SW79 1584 aa40.2■■■■■ 4.03
SSBP4-203ENST00000593641 NUP160Q12769 1436 aa40.2■■■■■ 4.03
SSBP4-203ENST00000593641 ERICH3Q5RHP9 1530 aa40.2■■■■■ 4.03
SSBP4-203ENST00000593641 ERCC6L2Q5T890 1561 aa40.1■■■■■ 4.01
SSBP4-203ENST00000593641 SHROOM2Q13796 1616 aa40.05■■■■■ 4
SSBP4-203ENST00000593641 PRG4Q92954 1404 aaPredicted RBP39.82■■■■□ 3.96
SSBP4-203ENST00000593641 RUSC2Q8N2Y8 1516 aa39.79■■■■□ 3.96
SSBP4-203ENST00000593641 JPH4Q96JJ6 628 aa39.77■■■■□ 3.96
SSBP4-203ENST00000593641 KIF27Q86VH2 1401 aa39.69■■■■□ 3.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms