Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 DCAF6-203ENST00000367843 3302 ntAPPRIS P3 TSL 5 BASIC13.4□□□□□ -0.265e-7■□□□□ 9.9
YBX3P16989 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.285e-7■□□□□ 9.9
YBX3P16989 DCAF6-204ENST00000432587 3522 ntTSL 2 BASIC12.82□□□□□ -0.365e-7■□□□□ 9.9
YBX3P16989 DCAF6-211ENST00000489398 1727 ntTSL 29.32□□□□□ -0.925e-7■□□□□ 9.9
YBX3P16989 DCAF6-202ENST00000367840 3349 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.945e-7■□□□□ 9.9
YBX3P16989 NCL-210ENST00000494618 910 ntTSL 28.18□□□□□ -1.13e-16■□□□□ 9.9
YBX3P16989 PRIM1-201ENST00000338193 1393 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.112e-7■□□□□ 9.9
YBX3P16989 PRIM1-206ENST00000550770 1008 ntTSL 514.7□□□□□ -0.062e-7■□□□□ 9.9
YBX3P16989 PRIM1-208ENST00000552590 1459 ntTSL 512.91□□□□□ -0.342e-7■□□□□ 9.9
YBX3P16989 CAT-201ENST00000241052 2302 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.425e-9■□□□□ 9.9
YBX3P16989 PRKCB-208ENST00000487674 693 ntTSL 211.73□□□□□ -0.533e-9■□□□□ 9.9
YBX3P16989 RPS10-NUDT3-203ENST00000639877 2911 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.475e-8■□□□□ 9.9
YBX3P16989 FDFT1-203ENST00000446331 1558 ntTSL 227.09■■□□□ 1.933e-19■□□□□ 9.9
YBX3P16989 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC25.61■■□□□ 1.693e-19■□□□□ 9.9
YBX3P16989 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.393e-19■□□□□ 9.9
YBX3P16989 FDFT1-207ENST00000525607 1773 ntTSL 223.32■■□□□ 1.323e-19■□□□□ 9.9
YBX3P16989 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC22.73■■□□□ 1.233e-19■□□□□ 9.9
YBX3P16989 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC20.19■□□□□ 0.823e-19■□□□□ 9.9
YBX3P16989 FDFT1-215ENST00000529464 932 ntTSL 1 (best)19.58■□□□□ 0.723e-19■□□□□ 9.9
YBX3P16989 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.54■□□□□ 0.723e-19■□□□□ 9.9
YBX3P16989 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC17.71■□□□□ 0.423e-19■□□□□ 9.9
YBX3P16989 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.43e-19■□□□□ 9.9
YBX3P16989 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.383e-19■□□□□ 9.9
YBX3P16989 FDFT1-204ENST00000525283 898 ntTSL 317.35■□□□□ 0.373e-19■□□□□ 9.9
YBX3P16989 FDFT1-218ENST00000530664 1761 ntTSL 2 BASIC16.05■□□□□ 0.163e-19■□□□□ 9.9
YBX3P16989 FDFT1-225ENST00000622850 1987 ntTSL 2 BASIC13.8□□□□□ -0.23e-19■□□□□ 9.9
YBX3P16989 FDFT1-212ENST00000528643 1909 ntTSL 2 BASIC9.29□□□□□ -0.923e-19■□□□□ 9.9
YBX3P16989 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC8.19□□□□□ -1.13e-19■□□□□ 9.9
YBX3P16989 FDFT1-208ENST00000525777 1472 ntTSL 2 BASIC7.96□□□□□ -1.133e-19■□□□□ 9.9
YBX3P16989 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC13.86□□□□□ -0.192e-8■□□□□ 9.9
YBX3P16989 PTPN1-201ENST00000371621 4008 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.552e-8■□□□□ 9.9
YBX3P16989 CHPT1-209ENST00000552329 580 ntTSL 49.15□□□□□ -0.944e-10■□□□□ 9.9
YBX3P16989 HIST1H2BN-201ENST00000396980 432 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.212e-7■□□□□ 9.9
YBX3P16989 AP2M1-213ENST00000463935 580 ntTSL 211.01□□□□□ -0.658e-7■□□□□ 9.9
YBX3P16989 AP2M1-217ENST00000476434 321 ntTSL 26.25□□□□□ -1.418e-7■□□□□ 9.9
YBX3P16989 ZNF512-204ENST00000416005 3515 ntTSL 2 BASIC11.43□□□□□ -0.582e-8■□□□□ 9.8
YBX3P16989 ZNF512-202ENST00000379717 3417 ntAPPRIS ALT1 TSL 5 BASIC10.58□□□□□ -0.722e-8■□□□□ 9.8
YBX3P16989 ZNF512-208ENST00000556601 3543 ntTSL 1 (best) BASIC9.86□□□□□ -0.832e-8■□□□□ 9.8
YBX3P16989 ZNF512-203ENST00000413371 3703 ntTSL 2 BASIC9.03□□□□□ -0.962e-8■□□□□ 9.8
YBX3P16989 ZNF512-201ENST00000355467 3541 ntAPPRIS P2 TSL 2 BASIC8.6□□□□□ -1.032e-8■□□□□ 9.8
YBX3P16989 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.722e-9■□□□□ 9.8
YBX3P16989 SORT1-202ENST00000466471 521 ntTSL 24.71□□□□□ -1.666e-7■□□□□ 9.8
YBX3P16989 BCL2L13-210ENST00000485631 1110 ntTSL 218.52■□□□□ 0.568e-9■□□□□ 9.8
YBX3P16989 E4F1-208ENST00000567111 691 ntTSL 228.31■■■□□ 2.128e-9■□□□□ 9.8
YBX3P16989 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC22.88■■□□□ 1.258e-9■□□□□ 9.8
YBX3P16989 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.7■□□□□ 0.98e-9■□□□□ 9.8
YBX3P16989 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.88e-9■□□□□ 9.8
YBX3P16989 E4F1-209ENST00000569796 5931 ntTSL 217.28■□□□□ 0.368e-9■□□□□ 9.8
YBX3P16989 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.231e-6■□□□□ 9.8
YBX3P16989 BUD23-206ENST00000430270 1260 ntTSL 526.46■■□□□ 1.833e-8■□□□□ 9.8
YBX3P16989 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.453e-8■□□□□ 9.8
YBX3P16989 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC17.54■□□□□ 0.43e-8■□□□□ 9.8
YBX3P16989 BUD23-213ENST00000463307 1815 ntTSL 1 (best)16.82■□□□□ 0.283e-8■□□□□ 9.8
YBX3P16989 BUD23-209ENST00000436944 2496 ntTSL 214.67□□□□□ -0.063e-8■□□□□ 9.8
YBX3P16989 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC27.54■■■□□ 26e-10■□□□□ 9.8
YBX3P16989 SHISA5-212ENST00000465449 1739 ntTSL 223■■□□□ 1.276e-10■□□□□ 9.8
YBX3P16989 SHISA5-214ENST00000486344 713 ntTSL 222.49■■□□□ 1.196e-10■□□□□ 9.8
YBX3P16989 SHISA5-218ENST00000497863 972 ntTSL 222.16■■□□□ 1.146e-10■□□□□ 9.8
YBX3P16989 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC20.64■□□□□ 0.896e-10■□□□□ 9.8
YBX3P16989 SHISA5-204ENST00000417962 2306 ntTSL 220.16■□□□□ 0.826e-10■□□□□ 9.8
YBX3P16989 SHISA5-216ENST00000494854 1908 ntTSL 1 (best)19.15■□□□□ 0.666e-10■□□□□ 9.8
YBX3P16989 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.09■□□□□ 0.656e-10■□□□□ 9.8
YBX3P16989 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC18.75■□□□□ 0.596e-10■□□□□ 9.8
YBX3P16989 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.51■□□□□ 0.556e-10■□□□□ 9.8
YBX3P16989 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.02■□□□□ 0.476e-10■□□□□ 9.8
YBX3P16989 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.356e-10■□□□□ 9.8
YBX3P16989 SHISA5-211ENST00000460758 1297 ntTSL 1 (best)17.02■□□□□ 0.326e-10■□□□□ 9.8
YBX3P16989 COL18A1-201ENST00000342220 3386 ntTSL 214.65□□□□□ -0.063e-6■□□□□ 9.8
YBX3P16989 SHISA5-213ENST00000466424 673 ntTSL 214.38□□□□□ -0.116e-10■□□□□ 9.8
YBX3P16989 SCFD1-211ENST00000554437 688 ntTSL 37.72□□□□□ -1.176e-10■□□□□ 9.8
YBX3P16989 SCFD1-212ENST00000554486 819 ntTSL 37.63□□□□□ -1.196e-10■□□□□ 9.8
YBX3P16989 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.251e-6■□□□□ 9.8
YBX3P16989 BTBD2-209ENST00000592082 349 ntTSL 520.38■□□□□ 0.855e-6■□□□□ 9.8
YBX3P16989 C14orf166-207ENST00000557553 557 ntTSL 418.1■□□□□ 0.497e-10■□□□□ 9.8
YBX3P16989 NLN-203ENST00000506539 2637 ntTSL 1 (best)14.9□□□□□ -0.027e-7■□□□□ 9.8
YBX3P16989 HIST1H2AA-201ENST00000297012 396 ntAPPRIS P1 BASIC13.11□□□□□ -0.311e-6■□□□□ 9.8
YBX3P16989 NLN-204ENST00000506677 701 ntTSL 37.19□□□□□ -1.267e-7■□□□□ 9.8
YBX3P16989 VPS28-212ENST00000530836 1613 ntTSL 525.92■■□□□ 1.741e-7■□□□□ 9.8
YBX3P16989 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC25.21■■□□□ 1.639e-9■□□□□ 9.8
YBX3P16989 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC25.19■■□□□ 1.629e-9■□□□□ 9.8
YBX3P16989 OTUD5-205ENST00000455452 2077 ntTSL 525.17■■□□□ 1.629e-9■□□□□ 9.8
YBX3P16989 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC24.81■■□□□ 1.569e-9■□□□□ 9.8
YBX3P16989 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC24.63■■□□□ 1.539e-9■□□□□ 9.8
YBX3P16989 VPS28-208ENST00000527797 1609 ntTSL 524.62■■□□□ 1.531e-7■□□□□ 9.8
YBX3P16989 VPS28-209ENST00000528142 1821 ntTSL 323.61■■□□□ 1.371e-7■□□□□ 9.8
YBX3P16989 VPS28-207ENST00000526977 2036 ntTSL 522.2■■□□□ 1.141e-7■□□□□ 9.8
YBX3P16989 VPS28-205ENST00000526204 2120 ntTSL 521.76■■□□□ 1.071e-7■□□□□ 9.8
YBX3P16989 VPS28-215ENST00000531924 695 ntTSL 319.97■□□□□ 0.791e-7■□□□□ 9.8
YBX3P16989 VPS28-213ENST00000530983 2337 ntTSL 519.56■□□□□ 0.721e-7■□□□□ 9.8
YBX3P16989 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.341e-7■□□□□ 9.8
YBX3P16989 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC17.19■□□□□ 0.341e-7■□□□□ 9.8
YBX3P16989 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC17.19■□□□□ 0.341e-7■□□□□ 9.8
YBX3P16989 VPS28-216ENST00000533806 650 ntTSL 316.84■□□□□ 0.291e-7■□□□□ 9.8
YBX3P16989 VPS28-214ENST00000531032 573 ntTSL 1 (best)15.59■□□□□ 0.091e-7■□□□□ 9.8
YBX3P16989 VPS28-204ENST00000526054 892 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.211e-7■□□□□ 9.8
YBX3P16989 CINP-209ENST00000561468 495 ntTSL 37.48□□□□□ -1.211e-7■□□□□ 9.8
YBX3P16989 PIEZO1-209ENST00000490756 446 ntTSL 327.8■■■□□ 2.042e-7■□□□□ 9.8
YBX3P16989 MAPKAP1-215ENST00000468896 401 ntTSL 1 (best)15.03■□□□□ -07e-7■□□□□ 9.8
YBX3P16989 HAUS4-212ENST00000554406 652 ntTSL 516.34■□□□□ 0.215e-8■□□□□ 9.8
YBX3P16989 HAUS4-221ENST00000557591 582 ntTSL 511.2□□□□□ -0.625e-8■□□□□ 9.8
Retrieved 100 of 29,075 protein–RNA pairs in 182.6 ms