RNA–Protein interactions for RNA: ENST00000550770.1

PRIM1-206, Transcript of DNA primase subunit 1, humanhuman

TSL 5

Gene PRIM1, Length 1,008 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRIM1-206ENST00000550770 AEBP2Q6ZN18 517 aaPredicted RBP32.99■■■□□ 2.87
PRIM1-206ENST00000550770 CHIC1Q5VXU3 224 aa31.97■■■□□ 2.71
PRIM1-206ENST00000550770 SENP3Q9H4L4 574 aaPredicted RBP28.19■■■□□ 2.1
PRIM1-206ENST00000550770 PHF23Q9BUL5 403 aaPredicted RBP28■■■□□ 2.07
PRIM1-206ENST00000550770 NISCHQ9Y2I1 1504 aa27.46■■□□□ 1.99
PRIM1-206ENST00000550770 FOXD1Q16676 465 aa26.11■■□□□ 1.77
PRIM1-206ENST00000550770 PLPPR3Q6T4P5 718 aa25.87■■□□□ 1.73
PRIM1-206ENST00000550770 ADRA2BP18089 450 aa24.81■■□□□ 1.56
PRIM1-206ENST00000550770 PPP6R1Q9UPN7 881 aa24.81■■□□□ 1.56
PRIM1-206ENST00000550770 PIAS4Q8N2W9 510 aaPredicted RBP24.6■■□□□ 1.53
PRIM1-206ENST00000550770 CCDC180Q9P1Z9 1646 aa24.49■■□□□ 1.51
PRIM1-206ENST00000550770 MSH5O43196 834 aa24.32■■□□□ 1.48
PRIM1-206ENST00000550770 ABCC9O60706 1549 aa24.1■■□□□ 1.45
PRIM1-206ENST00000550770 RB1CC1Q8TDY2 1594 aa23.1■■□□□ 1.29
PRIM1-206ENST00000550770 NACADO15069 1562 aa23.04■■□□□ 1.28
PRIM1-206ENST00000550770 DCAF8L2P0C7V8 631 aa22.91■■□□□ 1.26
PRIM1-206ENST00000550770 MYO15BQ96JP2 1530 aa22.87■■□□□ 1.25
PRIM1-206ENST00000550770 ZCCHC6Q5VYS8 1495 aaKnown RBP22.86■■□□□ 1.25
PRIM1-206ENST00000550770 SCAF1Q9H7N4 1312 aaKnown RBP22.86■■□□□ 1.25
PRIM1-206ENST00000550770 DCAF1Q9Y4B6 1507 aa22.72■■□□□ 1.23
PRIM1-206ENST00000550770 PPP4R3CPQ6ZMV5 832 aa22.71■■□□□ 1.23
PRIM1-206ENST00000550770 POTEDQ86YR6 584 aa22.65■■□□□ 1.22
PRIM1-206ENST00000550770 UNC13AQ9UPW8 1703 aa22.6■■□□□ 1.21
PRIM1-206ENST00000550770 MAPK8IP2Q13387 824 aaPredicted RBP22.58■■□□□ 1.21
PRIM1-206ENST00000550770 PABPN1Q86U42 306 aaKnown RBP eCLIP22.47■■□□□ 1.19
PRIM1-206ENST00000550770 BICRAQ9NZM4 1560 aa22.46■■□□□ 1.19
PRIM1-206ENST00000550770 DMRT2Q9Y5R5 561 aa22.41■■□□□ 1.18
PRIM1-206ENST00000550770 SCRIBQ14160 1630 aa22.33■■□□□ 1.17
PRIM1-206ENST00000550770 DNAJC5BQ9UF47 199 aa22.27■■□□□ 1.16
PRIM1-206ENST00000550770 SHROOM4Q9ULL8 1493 aa22.19■■□□□ 1.14
PRIM1-206ENST00000550770 CNKSR2Q8WXI2 1034 aa22.18■■□□□ 1.14
PRIM1-206ENST00000550770 NCBP3Q53F19 620 aaKnown RBP22.12■■□□□ 1.13
PRIM1-206ENST00000550770 EIF4G1Q04637 1599 aaKnown RBP21.87■■□□□ 1.09
PRIM1-206ENST00000550770 RNF216Q9NWF9 866 aaPredicted RBP21.83■■□□□ 1.09
PRIM1-206ENST00000550770 HOXD11P31277 338 aaPredicted RBP21.8■■□□□ 1.08
PRIM1-206ENST00000550770 CC2D2AQ9P2K1 1620 aa21.8■■□□□ 1.08
PRIM1-206ENST00000550770 KCNA4P22459 653 aa21.75■■□□□ 1.07
PRIM1-206ENST00000550770 CECR2Q9BXF3 1484 aa21.67■■□□□ 1.06
PRIM1-206ENST00000550770 NPM3O75607 178 aaKnown RBP21.67■■□□□ 1.06
PRIM1-206ENST00000550770 DCAF8L1A6NGE4 600 aa21.51■■□□□ 1.03
PRIM1-206ENST00000550770 SMARCA4P51532 1647 aa21.34■■□□□ 1.01
PRIM1-206ENST00000550770 BAZ1AQ9NRL2 1556 aaPredicted RBP21.28■■□□□ 1
PRIM1-206ENST00000550770 NCAPD3P42695 1498 aa21.27■■□□□ 1
PRIM1-206ENST00000550770 ATAD2BQ9ULI0 1458 aa21.26■□□□□ 0.99
PRIM1-206ENST00000550770 SMARCA2P51531 1590 aa21.22■□□□□ 0.99
PRIM1-206ENST00000550770 HMGXB3Q12766 1538 aa21.17■□□□□ 0.98
PRIM1-206ENST00000550770 MROH2BQ7Z745 1585 aa21.16■□□□□ 0.98
PRIM1-206ENST00000550770 PEG3Q9GZU2 1588 aa21.15■□□□□ 0.98
PRIM1-206ENST00000550770 BAZ1BQ9UIG0 1483 aaKnown RBP21.07■□□□□ 0.96
PRIM1-206ENST00000550770 WIZO95785 1651 aa20.92■□□□□ 0.94
PRIM1-206ENST00000550770 RSF1Q96T23 1441 aaPredicted RBP20.86■□□□□ 0.93
PRIM1-206ENST00000550770 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.84■□□□□ 0.93
PRIM1-206ENST00000550770 NESP48681 1621 aa20.82■□□□□ 0.92
PRIM1-206ENST00000550770 ERCC6Q03468 1493 aa20.76■□□□□ 0.91
PRIM1-206ENST00000550770 RNF39Q9H2S5 420 aa20.74■□□□□ 0.91
PRIM1-206ENST00000550770 LAMC3Q9Y6N6 1575 aa20.73■□□□□ 0.91
PRIM1-206ENST00000550770 SLC4A1APQ9BWU0 796 aaKnown RBP20.73■□□□□ 0.91
PRIM1-206ENST00000550770 TOP2AP11388 1531 aaKnown RBP20.7■□□□□ 0.9
PRIM1-206ENST00000550770 CUX2O14529 1486 aa20.62■□□□□ 0.89
PRIM1-206ENST00000550770 CADPSQ9ULU8 1353 aa20.62■□□□□ 0.89
PRIM1-206ENST00000550770 PDS5BQ9NTI5 1447 aa20.58■□□□□ 0.88
PRIM1-206ENST00000550770 KIF21AQ7Z4S6 1674 aa20.58■□□□□ 0.88
PRIM1-206ENST00000550770 THOC2Q8NI27 1593 aaKnown RBP20.57■□□□□ 0.88
PRIM1-206ENST00000550770 C1QBPQ07021 282 aaKnown RBP20.53■□□□□ 0.88
PRIM1-206ENST00000550770 SLC4A2P04920 1241 aa20.51■□□□□ 0.87
PRIM1-206ENST00000550770 CACNB1Q02641 598 aaPredicted RBP20.5■□□□□ 0.87
PRIM1-206ENST00000550770 CFTRP13569 1480 aa20.5■□□□□ 0.87
PRIM1-206ENST00000550770 CCDC88BA6NC98 1476 aa20.44■□□□□ 0.86
PRIM1-206ENST00000550770 MRC2Q9UBG0 1479 aa20.41■□□□□ 0.86
PRIM1-206ENST00000550770 FANCD2Q9BXW9 1451 aa20.4■□□□□ 0.86
PRIM1-206ENST00000550770 CEP164Q9UPV0 1460 aa20.39■□□□□ 0.85
PRIM1-206ENST00000550770 U3KPZ7 1027 aaPredicted RBP20.39■□□□□ 0.85
PRIM1-206ENST00000550770 WDR62O43379 1518 aa20.37■□□□□ 0.85
PRIM1-206ENST00000550770 PRDM2Q13029 1718 aa20.31■□□□□ 0.84
PRIM1-206ENST00000550770 URB2Q14146 1524 aaKnown RBP20.23■□□□□ 0.83
PRIM1-206ENST00000550770 FOXD4L1Q9NU39 408 aa20.19■□□□□ 0.82
PRIM1-206ENST00000550770 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.15■□□□□ 0.82
PRIM1-206ENST00000550770 HNRNPUL2Q1KMD3 747 aaKnown RBP20.15■□□□□ 0.82
PRIM1-206ENST00000550770 DNAJC5Q9H3Z4 198 aa20.15■□□□□ 0.82
PRIM1-206ENST00000550770 SUPT5HO00267 1087 aaKnown RBP20.14■□□□□ 0.81
PRIM1-206ENST00000550770 MYCNP04198 464 aaPredicted RBP20.1■□□□□ 0.81
PRIM1-206ENST00000550770 APLP2Q06481 763 aa20.07■□□□□ 0.8
PRIM1-206ENST00000550770 TOPBP1Q92547 1522 aa20.07■□□□□ 0.8
PRIM1-206ENST00000550770 DNMBPQ6XZF7 1577 aa20.04■□□□□ 0.8
PRIM1-206ENST00000550770 SAMD1Q6SPF0 538 aaPredicted RBP20.03■□□□□ 0.8
PRIM1-206ENST00000550770 ABCC8Q09428 1581 aa20.02■□□□□ 0.8
PRIM1-206ENST00000550770 IFT140Q96RY7 1462 aa19.97■□□□□ 0.79
PRIM1-206ENST00000550770 ZBTB22O15209 634 aa19.95■□□□□ 0.78
PRIM1-206ENST00000550770 CAPN15O75808 1086 aa19.93■□□□□ 0.78
PRIM1-206ENST00000550770 ZNF608Q9ULD9 1512 aaPredicted RBP19.92■□□□□ 0.78
PRIM1-206ENST00000550770 SPINK5Q9NQ38 1064 aaPredicted RBP19.9■□□□□ 0.78
PRIM1-206ENST00000550770 POLA1P09884 1462 aaPredicted RBP19.89■□□□□ 0.77
PRIM1-206ENST00000550770 TARBP1Q13395 1621 aaKnown RBP19.87■□□□□ 0.77
PRIM1-206ENST00000550770 CUX1P39880 1505 aa19.86■□□□□ 0.77
PRIM1-206ENST00000550770 EIF4G3O43432 1585 aaKnown RBP19.84■□□□□ 0.77
PRIM1-206ENST00000550770 FGD5Q6ZNL6 1462 aa19.82■□□□□ 0.76
PRIM1-206ENST00000550770 RAD54L2Q9Y4B4 1467 aa19.8■□□□□ 0.76
PRIM1-206ENST00000550770 SOGA1O94964 1423 aa19.77■□□□□ 0.76
PRIM1-206ENST00000550770 ZNF219Q9P2Y4 722 aaPredicted RBP19.77■□□□□ 0.76
PRIM1-206ENST00000550770 AQRO60306 1485 aaKnown RBP eCLIP19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms