RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 AEBP2Q6ZN18 517 aaPredicted RBP27.46■■□□□ 1.99
SCFD1-211ENST00000554437 CHIC1Q5VXU3 224 aa25.73■■□□□ 1.71
SCFD1-211ENST00000554437 SENP3Q9H4L4 574 aaPredicted RBP23.41■■□□□ 1.34
SCFD1-211ENST00000554437 PHF23Q9BUL5 403 aaPredicted RBP23.09■■□□□ 1.29
SCFD1-211ENST00000554437 FOXD1Q16676 465 aa22■■□□□ 1.11
SCFD1-211ENST00000554437 POTEDQ86YR6 584 aa21.57■■□□□ 1.04
SCFD1-211ENST00000554437 PLPPR3Q6T4P5 718 aa20.98■□□□□ 0.95
SCFD1-211ENST00000554437 MSH5O43196 834 aa20.76■□□□□ 0.91
SCFD1-211ENST00000554437 PIAS4Q8N2W9 510 aaPredicted RBP20.34■□□□□ 0.85
SCFD1-211ENST00000554437 PPP6R1Q9UPN7 881 aa20.08■□□□□ 0.81
SCFD1-211ENST00000554437 ADRA2BP18089 450 aa19.95■□□□□ 0.78
SCFD1-211ENST00000554437 MAPK8IP2Q13387 824 aaPredicted RBP18.58■□□□□ 0.56
SCFD1-211ENST00000554437 PPP4R3CPQ6ZMV5 832 aa18.51■□□□□ 0.55
SCFD1-211ENST00000554437 DMRT2Q9Y5R5 561 aa18.48■□□□□ 0.55
SCFD1-211ENST00000554437 CACNB1Q02641 598 aaPredicted RBP18.31■□□□□ 0.52
SCFD1-211ENST00000554437 SCAF1Q9H7N4 1312 aaKnown RBP18.26■□□□□ 0.51
SCFD1-211ENST00000554437 KCNA4P22459 653 aa18.23■□□□□ 0.51
SCFD1-211ENST00000554437 NCBP3Q53F19 620 aaKnown RBP18.08■□□□□ 0.48
SCFD1-211ENST00000554437 CNKSR2Q8WXI2 1034 aa17.95■□□□□ 0.46
SCFD1-211ENST00000554437 DCAF8L1A6NGE4 600 aa17.8■□□□□ 0.44
SCFD1-211ENST00000554437 NPM3O75607 178 aaKnown RBP17.78■□□□□ 0.44
SCFD1-211ENST00000554437 RNF39Q9H2S5 420 aa17.69■□□□□ 0.42
SCFD1-211ENST00000554437 RNF216Q9NWF9 866 aaPredicted RBP17.55■□□□□ 0.4
SCFD1-211ENST00000554437 HOXD11P31277 338 aaPredicted RBP17.53■□□□□ 0.4
SCFD1-211ENST00000554437 SLC4A1APQ9BWU0 796 aaKnown RBP17.41■□□□□ 0.38
SCFD1-211ENST00000554437 C1QBPQ07021 282 aaKnown RBP17.36■□□□□ 0.37
SCFD1-211ENST00000554437 DNAJC5BQ9UF47 199 aa17.18■□□□□ 0.34
SCFD1-211ENST00000554437 EHMT2Q96KQ7 1210 aa17.1■□□□□ 0.33
SCFD1-211ENST00000554437 CSRNP3Q8WYN3 585 aa16.79■□□□□ 0.28
SCFD1-211ENST00000554437 ZBTB22O15209 634 aa16.76■□□□□ 0.27
SCFD1-211ENST00000554437 SLC4A2P04920 1241 aa16.75■□□□□ 0.27
SCFD1-211ENST00000554437 POTEHQ6S545 545 aa16.74■□□□□ 0.27
SCFD1-211ENST00000554437 FOXD4L1Q9NU39 408 aa16.74■□□□□ 0.27
SCFD1-211ENST00000554437 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.7■□□□□ 0.26
SCFD1-211ENST00000554437 MYCNP04198 464 aaPredicted RBP16.43■□□□□ 0.22
SCFD1-211ENST00000554437 U3KPZ7 1027 aaPredicted RBP16.37■□□□□ 0.21
SCFD1-211ENST00000554437 DSG3P32926 999 aa16.36■□□□□ 0.21
SCFD1-211ENST00000554437 SPINK5Q9NQ38 1064 aaPredicted RBP16.31■□□□□ 0.2
SCFD1-211ENST00000554437 CAPN15O75808 1086 aa16.27■□□□□ 0.2
SCFD1-211ENST00000554437 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.24■□□□□ 0.19
SCFD1-211ENST00000554437 HNRNPUL2Q1KMD3 747 aaKnown RBP16.24■□□□□ 0.19
SCFD1-211ENST00000554437 SAMD1Q6SPF0 538 aaPredicted RBP16.19■□□□□ 0.18
SCFD1-211ENST00000554437 ATXN8OSP0DMR3 200 aa16.13■□□□□ 0.17
SCFD1-211ENST00000554437 APLP2Q06481 763 aa16.04■□□□□ 0.16
SCFD1-211ENST00000554437 ATF5Q9Y2D1 282 aaPredicted RBP15.98■□□□□ 0.15
SCFD1-211ENST00000554437 ABCB7O75027 752 aa15.87■□□□□ 0.13
SCFD1-211ENST00000554437 TRHP20396 242 aaPredicted RBP15.86■□□□□ 0.13
SCFD1-211ENST00000554437 ZNF219Q9P2Y4 722 aaPredicted RBP15.79■□□□□ 0.12
SCFD1-211ENST00000554437 POLA2Q14181 598 aa15.57■□□□□ 0.08
SCFD1-211ENST00000554437 CHRDL2Q6WN34 429 aa15.53■□□□□ 0.08
SCFD1-211ENST00000554437 RBM42Q9BTD8 480 aaKnown RBP15.53■□□□□ 0.08
SCFD1-211ENST00000554437 SP7Q8TDD2 431 aaPredicted RBP15.34■□□□□ 0.05
SCFD1-211ENST00000554437 FBLN2P98095 1184 aa15.33■□□□□ 0.04
SCFD1-211ENST00000554437 ZBTB12Q9Y330 459 aaPredicted RBP15.31■□□□□ 0.04
SCFD1-211ENST00000554437 MKRN4PQ13434 485 aaPredicted RBP15.29■□□□□ 0.04
SCFD1-211ENST00000554437 FKBP8Q14318 412 aa15.21■□□□□ 0.03
SCFD1-211ENST00000554437 AKT1S1Q96B36 256 aa15.06■□□□□ 0
SCFD1-211ENST00000554437 SPDYE4A6NLX3 237 aa15.04■□□□□ -0
SCFD1-211ENST00000554437 PIP4P2Q8N4L2 257 aa15.04■□□□□ -0
SCFD1-211ENST00000554437 OSCARQ8IYS5 282 aa15.03■□□□□ -0
SCFD1-211ENST00000554437 REM2Q8IYK8 340 aaPredicted RBP14.97□□□□□ -0.01
SCFD1-211ENST00000554437 HAX1O00165 279 aa14.96□□□□□ -0.01
SCFD1-211ENST00000554437 SPDYE2BA6NHP3 402 aa14.91□□□□□ -0.02
SCFD1-211ENST00000554437 SPDYE6P0CI01 402 aa14.91□□□□□ -0.02
SCFD1-211ENST00000554437 SPDYE2Q495Y8 402 aa14.91□□□□□ -0.02
SCFD1-211ENST00000554437 ZNF692Q9BU19 519 aaPredicted RBP14.9□□□□□ -0.02
SCFD1-211ENST00000554437 FXR2P51116 673 aaKnown RBP eCLIP14.83□□□□□ -0.04
SCFD1-211ENST00000554437 PITPNM1O00562 1244 aa14.82□□□□□ -0.04
SCFD1-211ENST00000554437 EVX2Q03828 476 aa14.81□□□□□ -0.04
SCFD1-211ENST00000554437 SSUH2Q9Y2M2 353 aa14.79□□□□□ -0.04
SCFD1-211ENST00000554437 PROM2Q8N271 834 aa14.76□□□□□ -0.05
SCFD1-211ENST00000554437 PABPN1Q86U42 306 aaKnown RBP eCLIP14.7□□□□□ -0.063e-6■■■■□ 24.8
SCFD1-211ENST00000554437 FBXO3Q9UK99 471 aa14.62□□□□□ -0.07
SCFD1-211ENST00000554437 STAG3Q9UJ98 1225 aa14.49□□□□□ -0.09
SCFD1-211ENST00000554437 SPDYE1Q8NFV5 336 aaPredicted RBP14.44□□□□□ -0.1
SCFD1-211ENST00000554437 PRKAR2AP13861 404 aaKnown RBP14.43□□□□□ -0.1
SCFD1-211ENST00000554437 LHX8Q68G74 356 aa14.41□□□□□ -0.1
SCFD1-211ENST00000554437 CLEC11AQ9Y240 323 aa14.41□□□□□ -0.1
SCFD1-211ENST00000554437 VASPP50552 380 aaPredicted RBP14.4□□□□□ -0.1
SCFD1-211ENST00000554437 C19orf67A6NJJ6 358 aa14.38□□□□□ -0.11
SCFD1-211ENST00000554437 GABBR2O75899 941 aa14.37□□□□□ -0.11
SCFD1-211ENST00000554437 PRR29P0C7W0 189 aa14.29□□□□□ -0.12
SCFD1-211ENST00000554437 MIER1Q8N108 512 aa14.28□□□□□ -0.12
SCFD1-211ENST00000554437 PLCD3Q8N3E9 789 aa14.28□□□□□ -0.12
SCFD1-211ENST00000554437 IFNLR1Q8IU57 520 aaPredicted RBP14.21□□□□□ -0.13
SCFD1-211ENST00000554437 PLEKHG5O94827 1062 aa14.2□□□□□ -0.14
SCFD1-211ENST00000554437 KLHL34Q8N239 644 aa14.18□□□□□ -0.14
SCFD1-211ENST00000554437 CHADLQ6NUI6 762 aa14.17□□□□□ -0.14
SCFD1-211ENST00000554437 POTEIP0CG38 1075 aa14.1□□□□□ -0.15
SCFD1-211ENST00000554437 CREBZFQ9NS37 354 aa14.1□□□□□ -0.15
SCFD1-211ENST00000554437 AMER1Q5JTC6 1135 aaPredicted RBP14.09□□□□□ -0.15
SCFD1-211ENST00000554437 PLSCR2Q9NRY7 297 aa14.09□□□□□ -0.15
SCFD1-211ENST00000554437 ZBTB47Q9UFB7 747 aaPredicted RBP14.08□□□□□ -0.16
SCFD1-211ENST00000554437 RTN4Q9NQC3 1192 aaKnown RBP14.05□□□□□ -0.16
SCFD1-211ENST00000554437 SPOCK2Q92563 424 aa14.04□□□□□ -0.16
SCFD1-211ENST00000554437 MNX1P50219 401 aaPredicted RBP13.95□□□□□ -0.18
SCFD1-211ENST00000554437 CD44P16070 742 aaKnown RBP13.91□□□□□ -0.18
SCFD1-211ENST00000554437 NPM1P06748 294 aaKnown RBP eCLIP13.9□□□□□ -0.18
SCFD1-211ENST00000554437 FARP1Q9Y4F1 1045 aaPredicted RBP13.9□□□□□ -0.18
SCFD1-211ENST00000554437 NUBP1P53384 320 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms