RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 NISCHQ9Y2I1 1504 aa48.16■■■■■ 5.3
VPS28-208ENST00000527797 CCDC180Q9P1Z9 1646 aa42.1■■■■■ 4.33
VPS28-208ENST00000527797 ZCCHC6Q5VYS8 1495 aaKnown RBP40.4■■■■■ 4.06
VPS28-208ENST00000527797 ABCC9O60706 1549 aa40.09■■■■■ 4.01
VPS28-208ENST00000527797 DCAF8L2P0C7V8 631 aa39.93■■■■□ 3.98
VPS28-208ENST00000527797 DCAF1Q9Y4B6 1507 aa39.84■■■■□ 3.97
VPS28-208ENST00000527797 MYO15BQ96JP2 1530 aa39.5■■■■□ 3.91
VPS28-208ENST00000527797 NACADO15069 1562 aa39.33■■■■□ 3.89
VPS28-208ENST00000527797 SHROOM4Q9ULL8 1493 aa39.08■■■■□ 3.85
VPS28-208ENST00000527797 RB1CC1Q8TDY2 1594 aa39.05■■■■□ 3.84
VPS28-208ENST00000527797 SCRIBQ14160 1630 aa38.66■■■■□ 3.78
VPS28-208ENST00000527797 UNC13AQ9UPW8 1703 aa38.1■■■■□ 3.69
VPS28-208ENST00000527797 BICRAQ9NZM4 1560 aa37.82■■■■□ 3.64
VPS28-208ENST00000527797 PABPN1Q86U42 306 aaKnown RBP eCLIP37.78■■■■□ 3.646e-9■□□□□ 9.8
VPS28-208ENST00000527797 SUPT5HO00267 1087 aaKnown RBP37.5■■■■□ 3.59
VPS28-208ENST00000527797 CECR2Q9BXF3 1484 aa37.43■■■■□ 3.58
VPS28-208ENST00000527797 RSF1Q96T23 1441 aaPredicted RBP37.26■■■■□ 3.56
VPS28-208ENST00000527797 BAZ1AQ9NRL2 1556 aaPredicted RBP37.23■■■■□ 3.55
VPS28-208ENST00000527797 MROH2BQ7Z745 1585 aa37.18■■■■□ 3.54
VPS28-208ENST00000527797 SMARCA4P51532 1647 aa37.05■■■■□ 3.52
VPS28-208ENST00000527797 WIZO95785 1651 aa36.82■■■■□ 3.48
VPS28-208ENST00000527797 EIF4G1Q04637 1599 aaKnown RBP36.73■■■■□ 3.47
VPS28-208ENST00000527797 PEG3Q9GZU2 1588 aa36.63■■■■□ 3.45
VPS28-208ENST00000527797 ATAD2BQ9ULI0 1458 aa36.56■■■■□ 3.44
VPS28-208ENST00000527797 SMARCA2P51531 1590 aa36.53■■■■□ 3.44
VPS28-208ENST00000527797 TOP2AP11388 1531 aaKnown RBP36.49■■■■□ 3.43
VPS28-208ENST00000527797 BAZ1BQ9UIG0 1483 aaKnown RBP36.35■■■■□ 3.41
VPS28-208ENST00000527797 NCAPD3P42695 1498 aa36.32■■■■□ 3.4
VPS28-208ENST00000527797 CC2D2AQ9P2K1 1620 aa36.25■■■■□ 3.39
VPS28-208ENST00000527797 HMGXB3Q12766 1538 aa36.21■■■■□ 3.39
VPS28-208ENST00000527797 CCDC88BA6NC98 1476 aa36.12■■■■□ 3.37
VPS28-208ENST00000527797 CHIC1Q5VXU3 224 aa35.75■■■■□ 3.31
VPS28-208ENST00000527797 DNAJC5BQ9UF47 199 aa35.61■■■■□ 3.29
VPS28-208ENST00000527797 CFTRP13569 1480 aa35.42■■■■□ 3.26
VPS28-208ENST00000527797 CADPSQ9ULU8 1353 aa35.38■■■■□ 3.25
VPS28-208ENST00000527797 TRIM41Q8WV44 630 aa35.32■■■■□ 3.25
VPS28-208ENST00000527797 ABCC8Q09428 1581 aa35.21■■■■□ 3.23
VPS28-208ENST00000527797 WRNQ14191 1432 aaPredicted RBP eCLIP35.1■■■■□ 3.21
VPS28-208ENST00000527797 PRDM2Q13029 1718 aa35.1■■■■□ 3.21
VPS28-208ENST00000527797 LAMC3Q9Y6N6 1575 aa35.09■■■■□ 3.21
VPS28-208ENST00000527797 NESP48681 1621 aa35.08■■■■□ 3.21
VPS28-208ENST00000527797 FANCD2Q9BXW9 1451 aa34.96■■■■□ 3.19
VPS28-208ENST00000527797 SYNJ1O43426 1573 aa34.9■■■■□ 3.18
VPS28-208ENST00000527797 PDS5BQ9NTI5 1447 aa34.89■■■■□ 3.18
VPS28-208ENST00000527797 TOP2BQ02880 1626 aa34.81■■■■□ 3.16
VPS28-208ENST00000527797 CUX1P39880 1505 aa34.78■■■■□ 3.16
VPS28-208ENST00000527797 CEP164Q9UPV0 1460 aa34.77■■■■□ 3.16
VPS28-208ENST00000527797 BIVM-ERCC5R4GMW8 1640 aa34.75■■■■□ 3.15
VPS28-208ENST00000527797 FAM9AQ8IZU1 332 aaPredicted RBP34.63■■■■□ 3.13
VPS28-208ENST00000527797 KIF21AQ7Z4S6 1674 aa34.6■■■■□ 3.13
VPS28-208ENST00000527797 DNMBPQ6XZF7 1577 aa34.57■■■■□ 3.12
VPS28-208ENST00000527797 SOGA1O94964 1423 aa34.55■■■■□ 3.12
VPS28-208ENST00000527797 TOPBP1Q92547 1522 aa34.54■■■■□ 3.12
VPS28-208ENST00000527797 URB2Q14146 1524 aaKnown RBP34.51■■■■□ 3.11
VPS28-208ENST00000527797 EEA1Q15075 1411 aa34.49■■■■□ 3.11
VPS28-208ENST00000527797 FGD5Q6ZNL6 1462 aa34.47■■■■□ 3.11
VPS28-208ENST00000527797 ERCC6Q03468 1493 aa34.44■■■■□ 3.1
VPS28-208ENST00000527797 MRC2Q9UBG0 1479 aa34.43■■■■□ 3.1
VPS28-208ENST00000527797 RUSC2Q8N2Y8 1516 aa34.41■■■■□ 3.1
VPS28-208ENST00000527797 LOC105371045A0A1W2PR82 267 aa34.35■■■■□ 3.09
VPS28-208ENST00000527797 POLA1P09884 1462 aaPredicted RBP34.34■■■■□ 3.09
VPS28-208ENST00000527797 CSRNP3Q8WYN3 585 aa34.33■■■■□ 3.09
VPS28-208ENST00000527797 KIF27Q86VH2 1401 aa34.26■■■■□ 3.07
VPS28-208ENST00000527797 WDR62O43379 1518 aa34.23■■■■□ 3.07
VPS28-208ENST00000527797 RAD54L2Q9Y4B4 1467 aa34.22■■■■□ 3.07
VPS28-208ENST00000527797 CUX2O14529 1486 aa34.21■■■■□ 3.07
VPS28-208ENST00000527797 ABCA10Q8WWZ4 1543 aa34.17■■■■□ 3.06
VPS28-208ENST00000527797 THOC2Q8NI27 1593 aaKnown RBP34.15■■■■□ 3.06
VPS28-208ENST00000527797 EHMT2Q96KQ7 1210 aa34.12■■■■□ 3.05
VPS28-208ENST00000527797 TARBP1Q13395 1621 aaKnown RBP34■■■■□ 3.03
VPS28-208ENST00000527797 WDR97A6NE52 1622 aa33.99■■■■□ 3.03
VPS28-208ENST00000527797 IFT140Q96RY7 1462 aa33.98■■■■□ 3.03
VPS28-208ENST00000527797 IGF1RP08069 1367 aa33.98■■■■□ 3.03
VPS28-208ENST00000527797 KIF21BO75037 1637 aa33.98■■■■□ 3.03
VPS28-208ENST00000527797 GOLGA3Q08378 1498 aa33.97■■■■□ 3.03
VPS28-208ENST00000527797 TDRD9Q8NDG6 1382 aaKnown RBP33.95■■■■□ 3.02
VPS28-208ENST00000527797 PRXQ9BXM0 1461 aa33.92■■■■□ 3.02
VPS28-208ENST00000527797 UBTFP17480 764 aaKnown RBP33.87■■■■□ 3.01
VPS28-208ENST00000527797 GAPVD1Q14C86 1478 aa33.87■■■■□ 3.01
VPS28-208ENST00000527797 ABCA5Q8WWZ7 1642 aa33.87■■■■□ 3.01
VPS28-208ENST00000527797 RAPGEF2Q9Y4G8 1499 aa33.84■■■■□ 3.01
VPS28-208ENST00000527797 ERICH3Q5RHP9 1530 aa33.83■■■■□ 3.01
VPS28-208ENST00000527797 TNIKQ9UKE5 1360 aa33.82■■■■□ 3.01
VPS28-208ENST00000527797 CARMIL1Q5VZK9 1371 aa33.82■■■■□ 3
VPS28-208ENST00000527797 AQRO60306 1485 aaKnown RBP eCLIP33.77■■■■□ 37e-10■■■■□ 24.3
VPS28-208ENST00000527797 ZNF608Q9ULD9 1512 aaPredicted RBP33.74■■■□□ 2.99
VPS28-208ENST00000527797 CUL7Q14999 1698 aa33.69■■■□□ 2.98
VPS28-208ENST00000527797 GRIN2BQ13224 1484 aa33.66■■■□□ 2.98
VPS28-208ENST00000527797 PBRM1Q86U86 1689 aa33.61■■■□□ 2.97
VPS28-208ENST00000527797 EIF4G3O43432 1585 aaKnown RBP33.6■■■□□ 2.97
VPS28-208ENST00000527797 CEP162Q5TB80 1403 aa33.58■■■□□ 2.97
VPS28-208ENST00000527797 FHAD1B1AJZ9 1412 aa33.52■■■□□ 2.96
VPS28-208ENST00000527797 ADAMTS12P58397 1594 aa33.46■■■□□ 2.95
VPS28-208ENST00000527797 SNAPC4Q5SXM2 1469 aa33.44■■■□□ 2.94
VPS28-208ENST00000527797 CLIP1P30622 1438 aa33.42■■■□□ 2.94
VPS28-208ENST00000527797 MAGI1Q96QZ7 1491 aaPredicted RBP33.4■■■□□ 2.94
VPS28-208ENST00000527797 RANGAP1P46060 587 aaPredicted RBP33.37■■■□□ 2.93
VPS28-208ENST00000527797 SYNJ2O15056 1496 aa33.27■■■□□ 2.92
VPS28-208ENST00000527797 CHMP7Q8WUX9 453 aaPredicted RBP33.26■■■□□ 2.91
VPS28-208ENST00000527797 GRIN2AQ12879 1464 aa33.23■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms