RNA–Protein interactions for RNA: ENST00000538689.4

FDFT1-222, Transcript of farnesyl-diphosphate farnesyltransferase 1, human

TSL 2 BASIC

Gene FDFT1, Length 2,289 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FDFT1-222	ENST00000538689	CHIC1	Q5VXU3	224 aa		15.69	■□□□□ 0.1
FDFT1-222	ENST00000538689	NISCH	Q9Y2I1	1504 aa		15.62	■□□□□ 0.09
FDFT1-222	ENST00000538689	AEBP2	Q6ZN18	517 aa	Predicted RBP	15.16	■□□□□ 0.02
FDFT1-222	ENST00000538689	PHF23	Q9BUL5	403 aa	Predicted RBP	14	□□□□□ -0.17
FDFT1-222	ENST00000538689	CCDC180	Q9P1Z9	1646 aa		13.74	□□□□□ -0.21
FDFT1-222	ENST00000538689	ABCC9	O60706	1549 aa		13.4	□□□□□ -0.26
FDFT1-222	ENST00000538689	EHMT2	Q96KQ7	1210 aa		13.27	□□□□□ -0.28
FDFT1-222	ENST00000538689	PLPPR3	Q6T4P5	718 aa		13.18	□□□□□ -0.3
FDFT1-222	ENST00000538689	ZCCHC6	Q5VYS8	1495 aa	Known RBP	13.14	□□□□□ -0.31
FDFT1-222	ENST00000538689	DCAF8L2	P0C7V8	631 aa		12.99	□□□□□ -0.33
FDFT1-222	ENST00000538689	DCAF1	Q9Y4B6	1507 aa		12.93	□□□□□ -0.34
FDFT1-222	ENST00000538689	NACAD	O15069	1562 aa		12.87	□□□□□ -0.35
FDFT1-222	ENST00000538689	RB1CC1	Q8TDY2	1594 aa		12.86	□□□□□ -0.35
FDFT1-222	ENST00000538689	SHROOM4	Q9ULL8	1493 aa		12.81	□□□□□ -0.36
FDFT1-222	ENST00000538689	MYO15B	Q96JP2	1530 aa		12.8	□□□□□ -0.36
FDFT1-222	ENST00000538689	KCNA4	P22459	653 aa		12.78	□□□□□ -0.36
FDFT1-222	ENST00000538689	UNC13A	Q9UPW8	1703 aa		12.7	□□□□□ -0.38
FDFT1-222	ENST00000538689	SLC24A1	O60721	1099 aa		12.66	□□□□□ -0.38
FDFT1-222	ENST00000538689	SCRIB	Q14160	1630 aa		12.63	□□□□□ -0.39
FDFT1-222	ENST00000538689	SENP3	Q9H4L4	574 aa	Predicted RBP	12.57	□□□□□ -0.4
FDFT1-222	ENST00000538689	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.56	□□□□□ -0.4
FDFT1-222	ENST00000538689	BICRA	Q9NZM4	1560 aa		12.56	□□□□□ -0.4
FDFT1-222	ENST00000538689	CSRNP3	Q8WYN3	585 aa		12.53	□□□□□ -0.4
FDFT1-222	ENST00000538689	ADRA2B	P18089	450 aa		12.47	□□□□□ -0.41
FDFT1-222	ENST00000538689	SUPT5H	O00267	1087 aa	Known RBP	12.4	□□□□□ -0.42
FDFT1-222	ENST00000538689	SLC4A1AP	Q9BWU0	796 aa	Known RBP	12.28	□□□□□ -0.44
FDFT1-222	ENST00000538689	DNAJC5B	Q9UF47	199 aa		12.23	□□□□□ -0.45
FDFT1-222	ENST00000538689	CECR2	Q9BXF3	1484 aa		12.18	□□□□□ -0.46
FDFT1-222	ENST00000538689	EIF4G1	Q04637	1599 aa	Known RBP	12.18	□□□□□ -0.46
FDFT1-222	ENST00000538689	RSF1	Q96T23	1441 aa	Predicted RBP	12.18	□□□□□ -0.46
FDFT1-222	ENST00000538689	RTN4	Q9NQC3	1192 aa	Known RBP	12.17	□□□□□ -0.46
FDFT1-222	ENST00000538689	CC2D2A	Q9P2K1	1620 aa		12.11	□□□□□ -0.47
FDFT1-222	ENST00000538689	MROH2B	Q7Z745	1585 aa		12.07	□□□□□ -0.48
FDFT1-222	ENST00000538689	SMARCA4	P51532	1647 aa		12.06	□□□□□ -0.48
FDFT1-222	ENST00000538689	PPP6R1	Q9UPN7	881 aa		12.06	□□□□□ -0.48
FDFT1-222	ENST00000538689	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	12.05	□□□□□ -0.48
FDFT1-222	ENST00000538689	AMER1	Q5JTC6	1135 aa	Predicted RBP	12	□□□□□ -0.49
FDFT1-222	ENST00000538689	WIZ	O95785	1651 aa		11.97	□□□□□ -0.49
FDFT1-222	ENST00000538689	ATAD2B	Q9ULI0	1458 aa		11.95	□□□□□ -0.5
FDFT1-222	ENST00000538689	PEG3	Q9GZU2	1588 aa		11.9	□□□□□ -0.5
FDFT1-222	ENST00000538689	NCAPD3	P42695	1498 aa		11.89	□□□□□ -0.51
FDFT1-222	ENST00000538689	SMARCA2	P51531	1590 aa		11.89	□□□□□ -0.51
FDFT1-222	ENST00000538689	TOP2A	P11388	1531 aa	Known RBP	11.85	□□□□□ -0.51
FDFT1-222	ENST00000538689	BAZ1B	Q9UIG0	1483 aa	Known RBP	11.84	□□□□□ -0.51
FDFT1-222	ENST00000538689	HMGXB3	Q12766	1538 aa		11.84	□□□□□ -0.51
FDFT1-222	ENST00000538689	ZBTB22	O15209	634 aa		11.81	□□□□□ -0.52
FDFT1-222	ENST00000538689	PPP4R3CP	Q6ZMV5	832 aa		11.77	□□□□□ -0.52
FDFT1-222	ENST00000538689	CCDC88B	A6NC98	1476 aa		11.74	□□□□□ -0.53
FDFT1-222	ENST00000538689	NCBP3	Q53F19	620 aa	Known RBP	11.67	□□□□□ -0.54
FDFT1-222	ENST00000538689	NES	P48681	1621 aa		11.67	□□□□□ -0.54
FDFT1-222	ENST00000538689	TRIM41	Q8WV44	630 aa		11.66	□□□□□ -0.54
FDFT1-222	ENST00000538689	NPM3	O75607	178 aa	Known RBP	11.64	□□□□□ -0.55
FDFT1-222	ENST00000538689	FOXD1	Q16676	465 aa		11.62	□□□□□ -0.55
FDFT1-222	ENST00000538689	CADPS	Q9ULU8	1353 aa		11.56	□□□□□ -0.56
FDFT1-222	ENST00000538689	LAMC3	Q9Y6N6	1575 aa		11.55	□□□□□ -0.56
FDFT1-222	ENST00000538689	CFTR	P13569	1480 aa		11.53	□□□□□ -0.56
FDFT1-222	ENST00000538689	ABCC8	Q09428	1581 aa		11.52	□□□□□ -0.57
FDFT1-222	ENST00000538689	KIF21A	Q7Z4S6	1674 aa		11.51	□□□□□ -0.57
FDFT1-222	ENST00000538689	LOC105371045	A0A1W2PR82	267 aa		11.49	□□□□□ -0.57
FDFT1-222	ENST00000538689	PRDM2	Q13029	1718 aa		11.47	□□□□□ -0.57
FDFT1-222	ENST00000538689	ERCC6	Q03468	1493 aa		11.46	□□□□□ -0.57
FDFT1-222	ENST00000538689	WRN	Q14191	1432 aa	Predicted RBP eCLIP	11.45	□□□□□ -0.58
FDFT1-222	ENST00000538689	FANCD2	Q9BXW9	1451 aa		11.44	□□□□□ -0.58
FDFT1-222	ENST00000538689	PDS5B	Q9NTI5	1447 aa		11.44	□□□□□ -0.58
FDFT1-222	ENST00000538689	FAM9A	Q8IZU1	332 aa	Predicted RBP	11.43	□□□□□ -0.58
FDFT1-222	ENST00000538689	THOC2	Q8NI27	1593 aa	Known RBP	11.41	□□□□□ -0.58
FDFT1-222	ENST00000538689	CEP164	Q9UPV0	1460 aa		11.39	□□□□□ -0.59
FDFT1-222	ENST00000538689	SYNJ1	O43426	1573 aa		11.38	□□□□□ -0.59
FDFT1-222	ENST00000538689	FOXD4L1	Q9NU39	408 aa		11.36	□□□□□ -0.59
FDFT1-222	ENST00000538689	URB2	Q14146	1524 aa	Known RBP	11.36	□□□□□ -0.59
FDFT1-222	ENST00000538689	EEA1	Q15075	1411 aa		11.35	□□□□□ -0.59
FDFT1-222	ENST00000538689	MRC2	Q9UBG0	1479 aa		11.35	□□□□□ -0.59
FDFT1-222	ENST00000538689	SOGA1	O94964	1423 aa		11.34	□□□□□ -0.59
FDFT1-222	ENST00000538689	TOP2B	Q02880	1626 aa		11.34	□□□□□ -0.59
FDFT1-222	ENST00000538689	WDR62	O43379	1518 aa		11.32	□□□□□ -0.6
FDFT1-222	ENST00000538689	BIVM-ERCC5	R4GMW8	1640 aa		11.31	□□□□□ -0.6
FDFT1-222	ENST00000538689	RUSC2	Q8N2Y8	1516 aa		11.29	□□□□□ -0.6
FDFT1-222	ENST00000538689	TOPBP1	Q92547	1522 aa		11.29	□□□□□ -0.6
FDFT1-222	ENST00000538689	CUX1	P39880	1505 aa		11.28	□□□□□ -0.6
FDFT1-222	ENST00000538689	FKBP8	Q14318	412 aa		11.28	□□□□□ -0.6
FDFT1-222	ENST00000538689	DNMBP	Q6XZF7	1577 aa		11.26	□□□□□ -0.61
FDFT1-222	ENST00000538689	CUX2	O14529	1486 aa		11.26	□□□□□ -0.61
FDFT1-222	ENST00000538689	PIAS4	Q8N2W9	510 aa	Predicted RBP	11.24	□□□□□ -0.61
FDFT1-222	ENST00000538689	POLA1	P09884	1462 aa	Predicted RBP	11.21	□□□□□ -0.61
FDFT1-222	ENST00000538689	FGD5	Q6ZNL6	1462 aa		11.21	□□□□□ -0.62
FDFT1-222	ENST00000538689	RAD54L2	Q9Y4B4	1467 aa		11.2	□□□□□ -0.62
FDFT1-222	ENST00000538689	TNIK	Q9UKE5	1360 aa		11.19	□□□□□ -0.62
FDFT1-222	ENST00000538689	GOLGA3	Q08378	1498 aa		11.19	□□□□□ -0.62
FDFT1-222	ENST00000538689	KIF21B	O75037	1637 aa		11.18	□□□□□ -0.62
FDFT1-222	ENST00000538689	PRKCSH	P14314	528 aa	Predicted RBP	11.18	□□□□□ -0.62
FDFT1-222	ENST00000538689	TARBP1	Q13395	1621 aa	Known RBP	11.17	□□□□□ -0.62
FDFT1-222	ENST00000538689	ZNF608	Q9ULD9	1512 aa	Predicted RBP	11.17	□□□□□ -0.62
FDFT1-222	ENST00000538689	CNKSR2	Q8WXI2	1034 aa		11.16	□□□□□ -0.62
FDFT1-222	ENST00000538689	UBTF	P17480	764 aa	Known RBP	11.15	□□□□□ -0.62
FDFT1-222	ENST00000538689	KIF27	Q86VH2	1401 aa		11.15	□□□□□ -0.62
FDFT1-222	ENST00000538689	IFT140	Q96RY7	1462 aa		11.13	□□□□□ -0.63
FDFT1-222	ENST00000538689	CEP162	Q5TB80	1403 aa		11.13	□□□□□ -0.63
FDFT1-222	ENST00000538689	WDR97	A6NE52	1622 aa		11.12	□□□□□ -0.63
FDFT1-222	ENST00000538689	PRX	Q9BXM0	1461 aa		11.11	□□□□□ -0.63
FDFT1-222	ENST00000538689	AQR	O60306	1485 aa	Known RBP eCLIP	11.11	□□□□□ -0.63	3e-7	■■■■□ 23

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