RNA–Protein interactions for RNA: ENST00000569796.1

E4F1-209, Transcript of E4F transcription factor 1, humanhuman

TSL 2

Gene E4F1, Length 5,931 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
E4F1-209ENST00000569796 DCAF8L2P0C7V8 631 aa29.57■■■□□ 2.32
E4F1-209ENST00000569796 SUPT5HO00267 1087 aaKnown RBP27.77■■■□□ 2.04
E4F1-209ENST00000569796 EHMT2Q96KQ7 1210 aa27.31■■□□□ 1.96
E4F1-209ENST00000569796 PELP1Q8IZL8 1130 aaKnown RBP27.27■■□□□ 1.96
E4F1-209ENST00000569796 SHROOM4Q9ULL8 1493 aa27.18■■□□□ 1.94
E4F1-209ENST00000569796 NISCHQ9Y2I1 1504 aa26.79■■□□□ 1.88
E4F1-209ENST00000569796 APLP2Q06481 763 aa26.72■■□□□ 1.87
E4F1-209ENST00000569796 FAM9AQ8IZU1 332 aaPredicted RBP26.47■■□□□ 1.83
E4F1-209ENST00000569796 TTBK1Q5TCY1 1321 aaPredicted RBP26.36■■□□□ 1.81
E4F1-209ENST00000569796 ERICH6Q7L0X2 663 aa26.29■■□□□ 1.8
E4F1-209ENST00000569796 RANGAP1P46060 587 aaPredicted RBP26.12■■□□□ 1.77
E4F1-209ENST00000569796 MYT1Q01538 1121 aa26.01■■□□□ 1.75
E4F1-209ENST00000569796 CCER1Q8TC90 406 aaPredicted RBP26■■□□□ 1.75
E4F1-209ENST00000569796 ATP1B4Q9UN42 357 aaPredicted RBP25.95■■□□□ 1.74
E4F1-209ENST00000569796 PCGF6Q9BYE7 350 aa25.93■■□□□ 1.74
E4F1-209ENST00000569796 CENPBP07199 599 aaPredicted RBP25.89■■□□□ 1.74
E4F1-209ENST00000569796 TRIM41Q8WV44 630 aa25.63■■□□□ 1.69
E4F1-209ENST00000569796 UBTFP17480 764 aaKnown RBP25.53■■□□□ 1.68
E4F1-209ENST00000569796 ZEB1P37275 1124 aaPredicted RBP25.48■■□□□ 1.67
E4F1-209ENST00000569796 NEFLP07196 543 aa25.33■■□□□ 1.65
E4F1-209ENST00000569796 YTHDC1Q96MU7 727 aaKnown RBP25.21■■□□□ 1.63
E4F1-209ENST00000569796 MYT1LQ9UL68 1186 aa25.14■■□□□ 1.62
E4F1-209ENST00000569796 PPARGC1BQ86YN6 1023 aaKnown RBP25.1■■□□□ 1.61
E4F1-209ENST00000569796 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25■■□□□ 1.59
E4F1-209ENST00000569796 HNRNPUL2Q1KMD3 747 aaKnown RBP25■■□□□ 1.59
E4F1-209ENST00000569796 POLR3GLQ9BT43 218 aa24.94■■□□□ 1.58
E4F1-209ENST00000569796 ITGAEP38570 1179 aa24.9■■□□□ 1.58
E4F1-209ENST00000569796 DAXXQ9UER7 740 aaPredicted RBP24.84■■□□□ 1.57
E4F1-209ENST00000569796 CHIC1Q5VXU3 224 aa24.76■■□□□ 1.55
E4F1-209ENST00000569796 CNGB1Q14028 1251 aaPredicted RBP24.71■■□□□ 1.55
E4F1-209ENST00000569796 SLC4A1APQ9BWU0 796 aaKnown RBP24.59■■□□□ 1.53
E4F1-209ENST00000569796 TRIM26Q12899 539 aaPredicted RBP24.56■■□□□ 1.52
E4F1-209ENST00000569796 RTL5Q5HYW3 569 aaPredicted RBP24.42■■□□□ 1.5
E4F1-209ENST00000569796 LOC105371045A0A1W2PR82 267 aa24.31■■□□□ 1.48
E4F1-209ENST00000569796 HRCP23327 699 aa24.3■■□□□ 1.48
E4F1-209ENST00000569796 ZNF316A6NFI3 1004 aaPredicted RBP24.24■■□□□ 1.47
E4F1-209ENST00000569796 CLSPNQ9HAW4 1339 aa24.21■■□□□ 1.47
E4F1-209ENST00000569796 FAM50AQ14320 339 aaKnown RBP24.16■■□□□ 1.46
E4F1-209ENST00000569796 TRIM52Q96A61 297 aa24.11■■□□□ 1.45
E4F1-209ENST00000569796 NEUROD1Q13562 356 aa23.95■■□□□ 1.42
E4F1-209ENST00000569796 PABPN1Q86U42 306 aaKnown RBP eCLIP23.94■■□□□ 1.423e-6■■■■□ 23.3
E4F1-209ENST00000569796 ZNF326Q5BKZ1 582 aaKnown RBP23.92■■□□□ 1.42
E4F1-209ENST00000569796 FBLN2P98095 1184 aa23.89■■□□□ 1.42
E4F1-209ENST00000569796 DIEXFQ68CQ4 756 aaKnown RBP23.85■■□□□ 1.41
E4F1-209ENST00000569796 SLC24A1O60721 1099 aa23.83■■□□□ 1.41
E4F1-209ENST00000569796 ZBTB47Q9UFB7 747 aaPredicted RBP23.79■■□□□ 1.4
E4F1-209ENST00000569796 BCANQ96GW7 911 aa23.75■■□□□ 1.39
E4F1-209ENST00000569796 BCL11AQ9H165 835 aa23.75■■□□□ 1.39
E4F1-209ENST00000569796 ABCC9O60706 1549 aa23.72■■□□□ 1.39
E4F1-209ENST00000569796 GTF3C3Q9Y5Q9 886 aa23.67■■□□□ 1.38
E4F1-209ENST00000569796 ANP32CO43423 234 aa23.63■■□□□ 1.37
E4F1-209ENST00000569796 ARID3CA6NKF2 412 aa23.62■■□□□ 1.37
E4F1-209ENST00000569796 CDK11AQ9UQ88 783 aaPredicted RBP23.62■■□□□ 1.37
E4F1-209ENST00000569796 CANXP27824 592 aaKnown RBP23.61■■□□□ 1.37
E4F1-209ENST00000569796 NEFMP07197 916 aa23.56■■□□□ 1.36
E4F1-209ENST00000569796 P3H3Q8IVL6 736 aa23.51■■□□□ 1.35
E4F1-209ENST00000569796 EIF5BO60841 1220 aaKnown RBP23.5■■□□□ 1.35
E4F1-209ENST00000569796 ZNF777Q9ULD5 760 aaPredicted RBP23.46■■□□□ 1.35
E4F1-209ENST00000569796 ESF1Q9H501 851 aaKnown RBP23.37■■□□□ 1.33
E4F1-209ENST00000569796 PLPPR3Q6T4P5 718 aa23.35■■□□□ 1.33
E4F1-209ENST00000569796 GLIPR1L2Q4G1C9 344 aa23.32■■□□□ 1.32
E4F1-209ENST00000569796 ANP32AP39687 249 aaKnown RBP23.3■■□□□ 1.32
E4F1-209ENST00000569796 CHGAP10645 457 aaKnown RBP23.26■■□□□ 1.31
E4F1-209ENST00000569796 STAG3Q9UJ98 1225 aa23.26■■□□□ 1.31
E4F1-209ENST00000569796 ACIN1Q9UKV3 1341 aaKnown RBP23.15■■□□□ 1.3
E4F1-209ENST00000569796 NPM2Q86SE8 214 aaKnown RBP23.15■■□□□ 1.3
E4F1-209ENST00000569796 ANP32BQ92688 251 aaKnown RBP23.15■■□□□ 1.3
E4F1-209ENST00000569796 CSRNP3Q8WYN3 585 aa23.1■■□□□ 1.29
E4F1-209ENST00000569796 NPM1P06748 294 aaKnown RBP eCLIP23.07■■□□□ 1.28
E4F1-209ENST00000569796 HSP90AA1P07900 732 aaKnown RBP23.01■■□□□ 1.27
E4F1-209ENST00000569796 TONSLQ96HA7 1378 aa22.97■■□□□ 1.27
E4F1-209ENST00000569796 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.95■■□□□ 1.261e-6■■■□□ 16.2
E4F1-209ENST00000569796 SALL2Q9Y467 1007 aaPredicted RBP22.94■■□□□ 1.26
E4F1-209ENST00000569796 SCAF1Q9H7N4 1312 aaKnown RBP22.91■■□□□ 1.26
E4F1-209ENST00000569796 FAM9BQ8IZU0 186 aa22.89■■□□□ 1.26
E4F1-209ENST00000569796 UPF2Q9HAU5 1272 aaKnown RBP22.88■■□□□ 1.25
E4F1-209ENST00000569796 CHIC2Q9UKJ5 165 aa22.86■■□□□ 1.25
E4F1-209ENST00000569796 HNRNPUQ00839 825 aaKnown RBP eCLIP22.86■■□□□ 1.25
E4F1-209ENST00000569796 A0A0G2JS52 829 aa22.84■■□□□ 1.25
E4F1-209ENST00000569796 FKBP8Q14318 412 aa22.84■■□□□ 1.25
E4F1-209ENST00000569796 NBR1Q14596 966 aa22.83■■□□□ 1.24
E4F1-209ENST00000569796 DDX10Q13206 875 aaKnown RBP22.79■■□□□ 1.24
E4F1-209ENST00000569796 KDM2AQ9Y2K7 1162 aa22.76■■□□□ 1.23
E4F1-209ENST00000569796 PLEKHG5O94827 1062 aa22.75■■□□□ 1.23
E4F1-209ENST00000569796 TMC1Q8TDI8 760 aa22.74■■□□□ 1.23
E4F1-209ENST00000569796 WDR43Q15061 677 aaKnown RBP eCLIP22.74■■□□□ 1.23
E4F1-209ENST00000569796 SENP3Q9H4L4 574 aaPredicted RBP22.73■■□□□ 1.23
E4F1-209ENST00000569796 ZBTB7CA1YPR0 619 aa22.73■■□□□ 1.23
E4F1-209ENST00000569796 ARXQ96QS3 562 aa22.71■■□□□ 1.23
E4F1-209ENST00000569796 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.71■■□□□ 1.23
E4F1-209ENST00000569796 TSPY4P0CV99 314 aa22.7■■□□□ 1.22
E4F1-209ENST00000569796 TSPY10P0CW01 314 aa22.7■■□□□ 1.22
E4F1-209ENST00000569796 SCRIBQ14160 1630 aa22.7■■□□□ 1.22
E4F1-209ENST00000569796 C14orf37Q86TY3 774 aa22.65■■□□□ 1.22
E4F1-209ENST00000569796 CCDC136Q96JN2 1154 aa22.63■■□□□ 1.21
E4F1-209ENST00000569796 CHMP7Q8WUX9 453 aaPredicted RBP22.61■■□□□ 1.21
E4F1-209ENST00000569796 PPP1R15AO75807 674 aaPredicted RBP22.58■■□□□ 1.2
E4F1-209ENST00000569796 MRS2Q9HD23 443 aa22.57■■□□□ 1.2
E4F1-209ENST00000569796 MYH16Q9H6N6 1097 aa22.56■■□□□ 1.2
E4F1-209ENST00000569796 MTUS2Q5JR59 1369 aa22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms