RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 NISCHQ9Y2I1 1504 aa32.36■■■□□ 2.77
VPS28-202ENST00000377348 CCDC180Q9P1Z9 1646 aa28.68■■■□□ 2.18
VPS28-202ENST00000377348 ABCC9O60706 1549 aa28.11■■■□□ 2.09
VPS28-202ENST00000377348 DCAF8L2P0C7V8 631 aa27.09■■□□□ 1.93
VPS28-202ENST00000377348 RB1CC1Q8TDY2 1594 aa26.99■■□□□ 1.91
VPS28-202ENST00000377348 ZCCHC6Q5VYS8 1495 aaKnown RBP26.97■■□□□ 1.91
VPS28-202ENST00000377348 NACADO15069 1562 aa26.97■■□□□ 1.91
VPS28-202ENST00000377348 MYO15BQ96JP2 1530 aa26.8■■□□□ 1.88
VPS28-202ENST00000377348 DCAF1Q9Y4B6 1507 aa26.72■■□□□ 1.87
VPS28-202ENST00000377348 UNC13AQ9UPW8 1703 aa26.39■■□□□ 1.81
VPS28-202ENST00000377348 PABPN1Q86U42 306 aaKnown RBP eCLIP26.31■■□□□ 1.86e-9■□□□□ 9.8
VPS28-202ENST00000377348 SCRIBQ14160 1630 aa26.26■■□□□ 1.79
VPS28-202ENST00000377348 BICRAQ9NZM4 1560 aa26.21■■□□□ 1.79
VPS28-202ENST00000377348 SHROOM4Q9ULL8 1493 aa25.85■■□□□ 1.73
VPS28-202ENST00000377348 DNAJC5BQ9UF47 199 aa25.78■■□□□ 1.72
VPS28-202ENST00000377348 EIF4G1Q04637 1599 aaKnown RBP25.51■■□□□ 1.67
VPS28-202ENST00000377348 CC2D2AQ9P2K1 1620 aa25.39■■□□□ 1.66
VPS28-202ENST00000377348 CECR2Q9BXF3 1484 aa25.26■■□□□ 1.63
VPS28-202ENST00000377348 SMARCA4P51532 1647 aa25.09■■□□□ 1.61
VPS28-202ENST00000377348 BAZ1AQ9NRL2 1556 aaPredicted RBP25.05■■□□□ 1.6
VPS28-202ENST00000377348 MROH2BQ7Z745 1585 aa24.97■■□□□ 1.59
VPS28-202ENST00000377348 ATAD2BQ9ULI0 1458 aa24.96■■□□□ 1.59
VPS28-202ENST00000377348 NCAPD3P42695 1498 aa24.9■■□□□ 1.58
VPS28-202ENST00000377348 SMARCA2P51531 1590 aa24.88■■□□□ 1.57
VPS28-202ENST00000377348 PEG3Q9GZU2 1588 aa24.81■■□□□ 1.56
VPS28-202ENST00000377348 HMGXB3Q12766 1538 aa24.77■■□□□ 1.56
VPS28-202ENST00000377348 BAZ1BQ9UIG0 1483 aaKnown RBP24.75■■□□□ 1.55
VPS28-202ENST00000377348 RSF1Q96T23 1441 aaPredicted RBP24.7■■□□□ 1.55
VPS28-202ENST00000377348 WIZO95785 1651 aa24.7■■□□□ 1.54
VPS28-202ENST00000377348 TOP2AP11388 1531 aaKnown RBP24.41■■□□□ 1.5
VPS28-202ENST00000377348 NESP48681 1621 aa24.35■■□□□ 1.49
VPS28-202ENST00000377348 LAMC3Q9Y6N6 1575 aa24.21■■□□□ 1.47
VPS28-202ENST00000377348 CADPSQ9ULU8 1353 aa24.2■■□□□ 1.46
VPS28-202ENST00000377348 ERCC6Q03468 1493 aa24.19■■□□□ 1.46
VPS28-202ENST00000377348 SUPT5HO00267 1087 aaKnown RBP24.19■■□□□ 1.46
VPS28-202ENST00000377348 CCDC88BA6NC98 1476 aa24.16■■□□□ 1.46
VPS28-202ENST00000377348 PDS5BQ9NTI5 1447 aa24.07■■□□□ 1.44
VPS28-202ENST00000377348 CFTRP13569 1480 aa24.07■■□□□ 1.44
VPS28-202ENST00000377348 KIF21AQ7Z4S6 1674 aa24.02■■□□□ 1.44
VPS28-202ENST00000377348 FANCD2Q9BXW9 1451 aa23.94■■□□□ 1.42
VPS28-202ENST00000377348 THOC2Q8NI27 1593 aaKnown RBP23.92■■□□□ 1.42
VPS28-202ENST00000377348 CEP164Q9UPV0 1460 aa23.88■■□□□ 1.41
VPS28-202ENST00000377348 CUX2O14529 1486 aa23.87■■□□□ 1.41
VPS28-202ENST00000377348 MRC2Q9UBG0 1479 aa23.83■■□□□ 1.41
VPS28-202ENST00000377348 PRDM2Q13029 1718 aa23.82■■□□□ 1.4
VPS28-202ENST00000377348 WDR62O43379 1518 aa23.74■■□□□ 1.39
VPS28-202ENST00000377348 URB2Q14146 1524 aaKnown RBP23.7■■□□□ 1.38
VPS28-202ENST00000377348 TOPBP1Q92547 1522 aa23.56■■□□□ 1.36
VPS28-202ENST00000377348 DNMBPQ6XZF7 1577 aa23.52■■□□□ 1.36
VPS28-202ENST00000377348 ABCC8Q09428 1581 aa23.49■■□□□ 1.35
VPS28-202ENST00000377348 CUX1P39880 1505 aa23.42■■□□□ 1.34
VPS28-202ENST00000377348 POLA1P09884 1462 aaPredicted RBP23.37■■□□□ 1.33
VPS28-202ENST00000377348 IFT140Q96RY7 1462 aa23.37■■□□□ 1.33
VPS28-202ENST00000377348 FGD5Q6ZNL6 1462 aa23.33■■□□□ 1.33
VPS28-202ENST00000377348 ZNF608Q9ULD9 1512 aaPredicted RBP23.32■■□□□ 1.32
VPS28-202ENST00000377348 RAD54L2Q9Y4B4 1467 aa23.3■■□□□ 1.32
VPS28-202ENST00000377348 TARBP1Q13395 1621 aaKnown RBP23.29■■□□□ 1.32
VPS28-202ENST00000377348 WRNQ14191 1432 aaPredicted RBP eCLIP23.28■■□□□ 1.32
VPS28-202ENST00000377348 SOGA1O94964 1423 aa23.27■■□□□ 1.32
VPS28-202ENST00000377348 SYNJ1O43426 1573 aa23.24■■□□□ 1.31
VPS28-202ENST00000377348 TOP2BQ02880 1626 aa23.2■■□□□ 1.3
VPS28-202ENST00000377348 BIVM-ERCC5R4GMW8 1640 aa23.19■■□□□ 1.3
VPS28-202ENST00000377348 AQRO60306 1485 aaKnown RBP eCLIP23.19■■□□□ 1.37e-10■■■■□ 24.3
VPS28-202ENST00000377348 EIF4G3O43432 1585 aaKnown RBP23.18■■□□□ 1.3
VPS28-202ENST00000377348 TDRD9Q8NDG6 1382 aaKnown RBP23.16■■□□□ 1.3
VPS28-202ENST00000377348 WDR97A6NE52 1622 aa23.1■■□□□ 1.29
VPS28-202ENST00000377348 DNAJC5Q9H3Z4 198 aa23.09■■□□□ 1.29
VPS28-202ENST00000377348 ABCA10Q8WWZ4 1543 aa23.08■■□□□ 1.28
VPS28-202ENST00000377348 GAPVD1Q14C86 1478 aa22.99■■□□□ 1.27
VPS28-202ENST00000377348 ABCA5Q8WWZ7 1642 aa22.98■■□□□ 1.27
VPS28-202ENST00000377348 GRIN2BQ13224 1484 aa22.97■■□□□ 1.27
VPS28-202ENST00000377348 SNAPC4Q5SXM2 1469 aa22.97■■□□□ 1.27
VPS28-202ENST00000377348 OSCARQ8IYS5 282 aa22.92■■□□□ 1.26
VPS28-202ENST00000377348 PBRM1Q86U86 1689 aa22.92■■□□□ 1.26
VPS28-202ENST00000377348 FBLN2P98095 1184 aa22.91■■□□□ 1.26
VPS28-202ENST00000377348 MAGI1Q96QZ7 1491 aaPredicted RBP22.88■■□□□ 1.25
VPS28-202ENST00000377348 CHD1O14646 1710 aa22.88■■□□□ 1.25
VPS28-202ENST00000377348 CHMP7Q8WUX9 453 aaPredicted RBP22.82■■□□□ 1.24
VPS28-202ENST00000377348 SYNJ2O15056 1496 aa22.81■■□□□ 1.24
VPS28-202ENST00000377348 TRIM41Q8WV44 630 aa22.8■■□□□ 1.24
VPS28-202ENST00000377348 ERICH3Q5RHP9 1530 aa22.78■■□□□ 1.24
VPS28-202ENST00000377348 KIF27Q86VH2 1401 aa22.77■■□□□ 1.24
VPS28-202ENST00000377348 ADAMTS12P58397 1594 aa22.76■■□□□ 1.23
VPS28-202ENST00000377348 FHAD1B1AJZ9 1412 aa22.72■■□□□ 1.23
VPS28-202ENST00000377348 IGF1RP08069 1367 aa22.7■■□□□ 1.22
VPS28-202ENST00000377348 GRIN2AQ12879 1464 aa22.69■■□□□ 1.22
VPS28-202ENST00000377348 RUSC2Q8N2Y8 1516 aa22.67■■□□□ 1.22
VPS28-202ENST00000377348 CLASP1Q7Z460 1538 aa22.63■■□□□ 1.21
VPS28-202ENST00000377348 CHIC1Q5VXU3 224 aa22.59■■□□□ 1.21
VPS28-202ENST00000377348 CEP170Q5SW79 1584 aa22.59■■□□□ 1.21
VPS28-202ENST00000377348 CUL7Q14999 1698 aa22.58■■□□□ 1.2
VPS28-202ENST00000377348 NUP160Q12769 1436 aa22.57■■□□□ 1.2
VPS28-202ENST00000377348 ARHGEF11O15085 1522 aa22.57■■□□□ 1.2
VPS28-202ENST00000377348 CARMIL1Q5VZK9 1371 aa22.56■■□□□ 1.2
VPS28-202ENST00000377348 RIMBP3CA6NJZ7 1639 aa22.56■■□□□ 1.2
VPS28-202ENST00000377348 RIMBP3BA6NNM3 1639 aa22.56■■□□□ 1.2
VPS28-202ENST00000377348 RIMBP3Q9UFD9 1639 aa22.56■■□□□ 1.2
VPS28-202ENST00000377348 RAPGEF2Q9Y4G8 1499 aa22.41■■□□□ 1.18
VPS28-202ENST00000377348 ARAP1Q96P48 1450 aa22.41■■□□□ 1.18
VPS28-202ENST00000377348 FAM9AQ8IZU1 332 aaPredicted RBP22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms