RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 NISCHQ9Y2I1 1504 aa39.89■■■■□ 3.98
VPS28-213ENST00000530983 CCDC180Q9P1Z9 1646 aa34.01■■■■□ 3.03
VPS28-213ENST00000530983 SHROOM4Q9ULL8 1493 aa33.95■■■■□ 3.02
VPS28-213ENST00000530983 ZCCHC6Q5VYS8 1495 aaKnown RBP33.79■■■■□ 3
VPS28-213ENST00000530983 SUPT5HO00267 1087 aaKnown RBP33.32■■■□□ 2.92
VPS28-213ENST00000530983 DCAF8L2P0C7V8 631 aa32.83■■■□□ 2.85
VPS28-213ENST00000530983 DCAF1Q9Y4B6 1507 aa32.78■■■□□ 2.84
VPS28-213ENST00000530983 CHIC1Q5VXU3 224 aa32.52■■■□□ 2.8
VPS28-213ENST00000530983 MYO15BQ96JP2 1530 aa32.48■■■□□ 2.79
VPS28-213ENST00000530983 ABCC9O60706 1549 aa31.92■■■□□ 2.7
VPS28-213ENST00000530983 SCRIBQ14160 1630 aa31.75■■■□□ 2.67
VPS28-213ENST00000530983 HRCP23327 699 aa31.7■■■□□ 2.66
VPS28-213ENST00000530983 RSF1Q96T23 1441 aaPredicted RBP31.58■■■□□ 2.65
VPS28-213ENST00000530983 PCGF6Q9BYE7 350 aa31.56■■■□□ 2.64
VPS28-213ENST00000530983 LOC105371045A0A1W2PR82 267 aa31.52■■■□□ 2.64
VPS28-213ENST00000530983 NACADO15069 1562 aa31.45■■■□□ 2.62
VPS28-213ENST00000530983 RB1CC1Q8TDY2 1594 aa31.31■■■□□ 2.6
VPS28-213ENST00000530983 CECR2Q9BXF3 1484 aa31.08■■■□□ 2.57
VPS28-213ENST00000530983 TRIM41Q8WV44 630 aa31.06■■■□□ 2.56
VPS28-213ENST00000530983 MROH2BQ7Z745 1585 aa31■■■□□ 2.55
VPS28-213ENST00000530983 TRIM26Q12899 539 aaPredicted RBP30.98■■■□□ 2.55
VPS28-213ENST00000530983 PPARGC1BQ86YN6 1023 aaKnown RBP30.97■■■□□ 2.55
VPS28-213ENST00000530983 WIZO95785 1651 aa30.87■■■□□ 2.53
VPS28-213ENST00000530983 FAM9AQ8IZU1 332 aaPredicted RBP30.76■■■□□ 2.51
VPS28-213ENST00000530983 BAZ1AQ9NRL2 1556 aaPredicted RBP30.72■■■□□ 2.51
VPS28-213ENST00000530983 EIF4G1Q04637 1599 aaKnown RBP30.57■■■□□ 2.48
VPS28-213ENST00000530983 EHMT2Q96KQ7 1210 aa30.45■■■□□ 2.47
VPS28-213ENST00000530983 UNC13AQ9UPW8 1703 aa30.4■■■□□ 2.46
VPS28-213ENST00000530983 TOP2AP11388 1531 aaKnown RBP30.39■■■□□ 2.46
VPS28-213ENST00000530983 SMARCA4P51532 1647 aa30.38■■■□□ 2.45
VPS28-213ENST00000530983 ZEB1P37275 1124 aaPredicted RBP30.34■■■□□ 2.45
VPS28-213ENST00000530983 SMARCA2P51531 1590 aa30.23■■■□□ 2.43
VPS28-213ENST00000530983 CCDC88BA6NC98 1476 aa30.23■■■□□ 2.43
VPS28-213ENST00000530983 ABCC8Q09428 1581 aa30.19■■■□□ 2.42
VPS28-213ENST00000530983 BICRAQ9NZM4 1560 aa30.01■■■□□ 2.39
VPS28-213ENST00000530983 SOGA1O94964 1423 aa29.9■■■□□ 2.38
VPS28-213ENST00000530983 WRNQ14191 1432 aaPredicted RBP eCLIP29.86■■■□□ 2.37
VPS28-213ENST00000530983 PEG3Q9GZU2 1588 aa29.82■■■□□ 2.36
VPS28-213ENST00000530983 CEP162Q5TB80 1403 aa29.82■■■□□ 2.36
VPS28-213ENST00000530983 PABPN1Q86U42 306 aaKnown RBP eCLIP29.82■■■□□ 2.366e-9■□□□□ 9.8
VPS28-213ENST00000530983 EEA1Q15075 1411 aa29.8■■■□□ 2.36
VPS28-213ENST00000530983 TNIKQ9UKE5 1360 aa29.77■■■□□ 2.36
VPS28-213ENST00000530983 RUSC2Q8N2Y8 1516 aa29.76■■■□□ 2.35
VPS28-213ENST00000530983 CSRNP3Q8WYN3 585 aa29.7■■■□□ 2.35
VPS28-213ENST00000530983 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.7■■■□□ 2.34
VPS28-213ENST00000530983 PELP1Q8IZL8 1130 aaKnown RBP29.63■■■□□ 2.33
VPS28-213ENST00000530983 CCER1Q8TC90 406 aaPredicted RBP29.61■■■□□ 2.33
VPS28-213ENST00000530983 GOLGA3Q08378 1498 aa29.59■■■□□ 2.33
VPS28-213ENST00000530983 SYNJ1O43426 1573 aa29.56■■■□□ 2.32
VPS28-213ENST00000530983 UBTFP17480 764 aaKnown RBP29.54■■■□□ 2.32
VPS28-213ENST00000530983 ATAD2BQ9ULI0 1458 aa29.53■■■□□ 2.32
VPS28-213ENST00000530983 TTBK1Q5TCY1 1321 aaPredicted RBP29.52■■■□□ 2.32
VPS28-213ENST00000530983 SCAF1Q9H7N4 1312 aaKnown RBP29.46■■■□□ 2.31
VPS28-213ENST00000530983 BAZ1BQ9UIG0 1483 aaKnown RBP29.45■■■□□ 2.3
VPS28-213ENST00000530983 KIF21BO75037 1637 aa29.44■■■□□ 2.3
VPS28-213ENST00000530983 CEP164Q9UPV0 1460 aa29.42■■■□□ 2.3
VPS28-213ENST00000530983 CLIP1P30622 1438 aa29.23■■■□□ 2.27
VPS28-213ENST00000530983 TOP2BQ02880 1626 aa29.2■■■□□ 2.26
VPS28-213ENST00000530983 RAPGEF2Q9Y4G8 1499 aa29.18■■■□□ 2.26
VPS28-213ENST00000530983 VPS8Q8N3P4 1428 aa29.15■■■□□ 2.26
VPS28-213ENST00000530983 BIVM-ERCC5R4GMW8 1640 aa29.12■■■□□ 2.25
VPS28-213ENST00000530983 DIEXFQ68CQ4 756 aaKnown RBP29.11■■■□□ 2.25
VPS28-213ENST00000530983 HMGXB3Q12766 1538 aa29.07■■■□□ 2.24
VPS28-213ENST00000530983 NCAPD3P42695 1498 aa29.04■■■□□ 2.24
VPS28-213ENST00000530983 HNRNPUL2Q1KMD3 747 aaKnown RBP28.95■■■□□ 2.22
VPS28-213ENST00000530983 ACIN1Q9UKV3 1341 aaKnown RBP28.95■■■□□ 2.22
VPS28-213ENST00000530983 ERICH3Q5RHP9 1530 aa28.94■■■□□ 2.22
VPS28-213ENST00000530983 PRXQ9BXM0 1461 aa28.91■■■□□ 2.22
VPS28-213ENST00000530983 APLP2Q06481 763 aa28.89■■■□□ 2.22
VPS28-213ENST00000530983 NEUROD1Q13562 356 aa28.89■■■□□ 2.22
VPS28-213ENST00000530983 ZNF316A6NFI3 1004 aaPredicted RBP28.88■■■□□ 2.21
VPS28-213ENST00000530983 RANGAP1P46060 587 aaPredicted RBP28.88■■■□□ 2.21
VPS28-213ENST00000530983 CUX1P39880 1505 aa28.87■■■□□ 2.21
VPS28-213ENST00000530983 ARAP1Q96P48 1450 aa28.8■■■□□ 2.2
VPS28-213ENST00000530983 CFTRP13569 1480 aa28.75■■■□□ 2.19
VPS28-213ENST00000530983 CENPBP07199 599 aaPredicted RBP28.74■■■□□ 2.19
VPS28-213ENST00000530983 KIF27Q86VH2 1401 aa28.71■■■□□ 2.19
VPS28-213ENST00000530983 PRDM2Q13029 1718 aa28.63■■■□□ 2.17
VPS28-213ENST00000530983 GTF3C3Q9Y5Q9 886 aa28.59■■■□□ 2.17
VPS28-213ENST00000530983 KANK4Q5T7N3 995 aaPredicted RBP28.58■■■□□ 2.17
VPS28-213ENST00000530983 ARHGAP35Q9NRY4 1499 aa28.52■■■□□ 2.16
VPS28-213ENST00000530983 RRBP1Q9P2E9 1410 aaKnown RBP28.5■■■□□ 2.15
VPS28-213ENST00000530983 DHX57Q6P158 1386 aaKnown RBP28.5■■■□□ 2.15
VPS28-213ENST00000530983 CLSPNQ9HAW4 1339 aa28.49■■■□□ 2.15
VPS28-213ENST00000530983 MIER1Q8N108 512 aa28.48■■■□□ 2.15
VPS28-213ENST00000530983 CUX2O14529 1486 aa28.41■■■□□ 2.14
VPS28-213ENST00000530983 CADPSQ9ULU8 1353 aa28.41■■■□□ 2.14
VPS28-213ENST00000530983 IGF1RP08069 1367 aa28.39■■■□□ 2.14
VPS28-213ENST00000530983 YTHDC1Q96MU7 727 aaKnown RBP28.37■■■□□ 2.13
VPS28-213ENST00000530983 CC2D2AQ9P2K1 1620 aa28.34■■■□□ 2.13
VPS28-213ENST00000530983 CCNB3Q8WWL7 1395 aa28.33■■■□□ 2.13
VPS28-213ENST00000530983 MYT1Q01538 1121 aa28.33■■■□□ 2.13
VPS28-213ENST00000530983 FGD5Q6ZNL6 1462 aa28.31■■■□□ 2.12
VPS28-213ENST00000530983 TIAM1Q13009 1591 aa28.26■■■□□ 2.11
VPS28-213ENST00000530983 CARMIL1Q5VZK9 1371 aa28.26■■■□□ 2.11
VPS28-213ENST00000530983 MAP3K1Q13233 1512 aa28.24■■■□□ 2.11
VPS28-213ENST00000530983 LRRC9Q6ZRR7 1453 aa28.12■■■□□ 2.09
VPS28-213ENST00000530983 ITGAEP38570 1179 aa28.12■■■□□ 2.09
VPS28-213ENST00000530983 FANCD2Q9BXW9 1451 aa28.11■■■□□ 2.09
VPS28-213ENST00000530983 RAB3GAP2Q9H2M9 1393 aa28.08■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms