RNA–Protein interactions for RNA: ENST00000552590.6

PRIM1-208, Transcript of DNA primase subunit 1, humanhuman

TSL 5

Gene PRIM1, Length 1,459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRIM1-208ENST00000552590 AEBP2Q6ZN18 517 aaPredicted RBP31.36■■■□□ 2.61
PRIM1-208ENST00000552590 CHIC1Q5VXU3 224 aa29.33■■■□□ 2.29
PRIM1-208ENST00000552590 SENP3Q9H4L4 574 aaPredicted RBP26.92■■□□□ 1.9
PRIM1-208ENST00000552590 PHF23Q9BUL5 403 aaPredicted RBP26.44■■□□□ 1.82
PRIM1-208ENST00000552590 FOXD1Q16676 465 aa25.18■■□□□ 1.62
PRIM1-208ENST00000552590 POTEDQ86YR6 584 aa24.86■■□□□ 1.57
PRIM1-208ENST00000552590 MSH5O43196 834 aa23.94■■□□□ 1.42
PRIM1-208ENST00000552590 PIAS4Q8N2W9 510 aaPredicted RBP23.32■■□□□ 1.32
PRIM1-208ENST00000552590 PPP6R1Q9UPN7 881 aa22.85■■□□□ 1.25
PRIM1-208ENST00000552590 ADRA2BP18089 450 aa22.73■■□□□ 1.23
PRIM1-208ENST00000552590 PLPPR3Q6T4P5 718 aa22.73■■□□□ 1.23
PRIM1-208ENST00000552590 NISCHQ9Y2I1 1504 aa21.93■■□□□ 1.1
PRIM1-208ENST00000552590 DMRT2Q9Y5R5 561 aa21.2■□□□□ 0.98
PRIM1-208ENST00000552590 ABCC9O60706 1549 aa21.18■□□□□ 0.98
PRIM1-208ENST00000552590 MAPK8IP2Q13387 824 aaPredicted RBP21.14■□□□□ 0.98
PRIM1-208ENST00000552590 CACNB1Q02641 598 aaPredicted RBP21.08■□□□□ 0.97
PRIM1-208ENST00000552590 DNAJC5BQ9UF47 199 aa20.85■□□□□ 0.93
PRIM1-208ENST00000552590 SCAF1Q9H7N4 1312 aaKnown RBP20.84■□□□□ 0.93
PRIM1-208ENST00000552590 DCAF8L1A6NGE4 600 aa20.37■□□□□ 0.85
PRIM1-208ENST00000552590 RNF39Q9H2S5 420 aa20.32■□□□□ 0.84
PRIM1-208ENST00000552590 HOXD11P31277 338 aaPredicted RBP20.08■□□□□ 0.81
PRIM1-208ENST00000552590 CCDC180Q9P1Z9 1646 aa20.06■□□□□ 0.8
PRIM1-208ENST00000552590 C1QBPQ07021 282 aaKnown RBP19.99■□□□□ 0.79
PRIM1-208ENST00000552590 DNAJC5Q9H3Z4 198 aa19.84■□□□□ 0.77
PRIM1-208ENST00000552590 PPP4R3CPQ6ZMV5 832 aa19.79■□□□□ 0.76
PRIM1-208ENST00000552590 RNF216Q9NWF9 866 aaPredicted RBP19.69■□□□□ 0.74
PRIM1-208ENST00000552590 CNKSR2Q8WXI2 1034 aa19.64■□□□□ 0.73
PRIM1-208ENST00000552590 RB1CC1Q8TDY2 1594 aa19.63■□□□□ 0.73
PRIM1-208ENST00000552590 PABPN1Q86U42 306 aaKnown RBP eCLIP19.61■□□□□ 0.73
PRIM1-208ENST00000552590 POTEHQ6S545 545 aa19.32■□□□□ 0.68
PRIM1-208ENST00000552590 NACADO15069 1562 aa19.23■□□□□ 0.67
PRIM1-208ENST00000552590 UNC13AQ9UPW8 1703 aa19.22■□□□□ 0.67
PRIM1-208ENST00000552590 CECR2Q9BXF3 1484 aa19.17■□□□□ 0.66
PRIM1-208ENST00000552590 BICRAQ9NZM4 1560 aa19.14■□□□□ 0.65
PRIM1-208ENST00000552590 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.12■□□□□ 0.65
PRIM1-208ENST00000552590 DCAF8L2P0C7V8 631 aa19.08■□□□□ 0.64
PRIM1-208ENST00000552590 CC2D2AQ9P2K1 1620 aa19.04■□□□□ 0.64
PRIM1-208ENST00000552590 NCBP3Q53F19 620 aaKnown RBP18.77■□□□□ 0.6
PRIM1-208ENST00000552590 EIF4G1Q04637 1599 aaKnown RBP18.74■□□□□ 0.59
PRIM1-208ENST00000552590 DSG3P32926 999 aa18.73■□□□□ 0.59
PRIM1-208ENST00000552590 SHROOM4Q9ULL8 1493 aa18.66■□□□□ 0.58
PRIM1-208ENST00000552590 CAPN15O75808 1086 aa18.63■□□□□ 0.57
PRIM1-208ENST00000552590 U3KPZ7 1027 aaPredicted RBP18.61■□□□□ 0.57
PRIM1-208ENST00000552590 SPINK5Q9NQ38 1064 aaPredicted RBP18.6■□□□□ 0.57
PRIM1-208ENST00000552590 CUX2O14529 1486 aa18.6■□□□□ 0.57
PRIM1-208ENST00000552590 TRIM41Q8WV44 630 aa18.59■□□□□ 0.57
PRIM1-208ENST00000552590 MYO15BQ96JP2 1530 aa18.58■□□□□ 0.57
PRIM1-208ENST00000552590 NPM3O75607 178 aaKnown RBP18.49■□□□□ 0.55
PRIM1-208ENST00000552590 ERCC6Q03468 1493 aa18.34■□□□□ 0.53
PRIM1-208ENST00000552590 SCRIBQ14160 1630 aa18.31■□□□□ 0.52
PRIM1-208ENST00000552590 TRHP20396 242 aaPredicted RBP18.12■□□□□ 0.49
PRIM1-208ENST00000552590 ABCB7O75027 752 aa18.11■□□□□ 0.49
PRIM1-208ENST00000552590 ZNF219Q9P2Y4 722 aaPredicted RBP18.06■□□□□ 0.48
PRIM1-208ENST00000552590 APLP2Q06481 763 aa18.03■□□□□ 0.48
PRIM1-208ENST00000552590 DCAF1Q9Y4B6 1507 aa17.99■□□□□ 0.47
PRIM1-208ENST00000552590 ZCCHC6Q5VYS8 1495 aaKnown RBP17.93■□□□□ 0.46
PRIM1-208ENST00000552590 RBM42Q9BTD8 480 aaKnown RBP17.92■□□□□ 0.46
PRIM1-208ENST00000552590 NESP48681 1621 aa17.92■□□□□ 0.46
PRIM1-208ENST00000552590 SLC4A2P04920 1241 aa17.88■□□□□ 0.45
PRIM1-208ENST00000552590 THOC2Q8NI27 1593 aaKnown RBP17.87■□□□□ 0.45
PRIM1-208ENST00000552590 CHRDL2Q6WN34 429 aa17.87■□□□□ 0.45
PRIM1-208ENST00000552590 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.81■□□□□ 0.44
PRIM1-208ENST00000552590 HNRNPUL2Q1KMD3 747 aaKnown RBP17.81■□□□□ 0.44
PRIM1-208ENST00000552590 NCAPD3P42695 1498 aa17.79■□□□□ 0.44
PRIM1-208ENST00000552590 SMARCA2P51531 1590 aa17.72■□□□□ 0.43
PRIM1-208ENST00000552590 SP7Q8TDD2 431 aaPredicted RBP17.69■□□□□ 0.42
PRIM1-208ENST00000552590 SAMD1Q6SPF0 538 aaPredicted RBP17.65■□□□□ 0.42
PRIM1-208ENST00000552590 OSCARQ8IYS5 282 aa17.64■□□□□ 0.41
PRIM1-208ENST00000552590 BAZ1AQ9NRL2 1556 aaPredicted RBP17.62■□□□□ 0.41
PRIM1-208ENST00000552590 ATAD2BQ9ULI0 1458 aa17.61■□□□□ 0.41
PRIM1-208ENST00000552590 KIF21AQ7Z4S6 1674 aa17.61■□□□□ 0.41
PRIM1-208ENST00000552590 HMGXB3Q12766 1538 aa17.53■□□□□ 0.4
PRIM1-208ENST00000552590 LAMC3Q9Y6N6 1575 aa17.53■□□□□ 0.4
PRIM1-208ENST00000552590 RIMBP3CA6NJZ7 1639 aa17.51■□□□□ 0.39
PRIM1-208ENST00000552590 RIMBP3BA6NNM3 1639 aa17.51■□□□□ 0.39
PRIM1-208ENST00000552590 RIMBP3Q9UFD9 1639 aa17.51■□□□□ 0.39
PRIM1-208ENST00000552590 PDS5BQ9NTI5 1447 aa17.49■□□□□ 0.39
PRIM1-208ENST00000552590 POLA2Q14181 598 aa17.43■□□□□ 0.38
PRIM1-208ENST00000552590 MRC2Q9UBG0 1479 aa17.4■□□□□ 0.38
PRIM1-208ENST00000552590 WDR62O43379 1518 aa17.38■□□□□ 0.37
PRIM1-208ENST00000552590 BAZ1BQ9UIG0 1483 aaKnown RBP17.38■□□□□ 0.37
PRIM1-208ENST00000552590 CYB5RLQ6IPT4 315 aa17.35■□□□□ 0.37
PRIM1-208ENST00000552590 ARHGEF11O15085 1522 aa17.34■□□□□ 0.37
PRIM1-208ENST00000552590 KCNA4P22459 653 aa17.32■□□□□ 0.36
PRIM1-208ENST00000552590 SMARCA4P51532 1647 aa17.32■□□□□ 0.36
PRIM1-208ENST00000552590 AKT1S1Q96B36 256 aa17.31■□□□□ 0.36
PRIM1-208ENST00000552590 PIP4P2Q8N4L2 257 aa17.24■□□□□ 0.35
PRIM1-208ENST00000552590 CADPSQ9ULU8 1353 aa17.23■□□□□ 0.35
PRIM1-208ENST00000552590 HAX1O00165 279 aa17.18■□□□□ 0.34
PRIM1-208ENST00000552590 ILDR1Q86SU0 546 aaPredicted RBP17.18■□□□□ 0.34
PRIM1-208ENST00000552590 REM2Q8IYK8 340 aaPredicted RBP17.14■□□□□ 0.33
PRIM1-208ENST00000552590 CEP164Q9UPV0 1460 aa17.13■□□□□ 0.33
PRIM1-208ENST00000552590 MYCNP04198 464 aaPredicted RBP17.12■□□□□ 0.33
PRIM1-208ENST00000552590 ARAP1Q96P48 1450 aa17.12■□□□□ 0.33
PRIM1-208ENST00000552590 PEG3Q9GZU2 1588 aa17.12■□□□□ 0.33
PRIM1-208ENST00000552590 FANCD2Q9BXW9 1451 aa17.04■□□□□ 0.32
PRIM1-208ENST00000552590 ZBTB12Q9Y330 459 aaPredicted RBP17.03■□□□□ 0.32
PRIM1-208ENST00000552590 FXR2P51116 673 aaKnown RBP eCLIP17.01■□□□□ 0.31
PRIM1-208ENST00000552590 URB2Q14146 1524 aaKnown RBP16.98■□□□□ 0.31
PRIM1-208ENST00000552590 PITPNM1O00562 1244 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms