Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 DIMT1-205ENST00000514911 1034 ntTSL 529.65■■■□□ 2.343e-7■■■■■ 117
YBX3P16989 DIMT1-203ENST00000509182 961 ntTSL 229.65■■■□□ 2.343e-7■■■■■ 117
YBX3P16989 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC25.87■■□□□ 1.733e-7■■■■■ 117
YBX3P16989 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.363e-7■■■■■ 117
YBX3P16989 GAPDHP1-201ENST00000452570 1005 ntBASIC15.68■□□□□ 0.12e-6■■■■■ 108.5
YBX3P16989 RPL31-202ENST00000409000 641 ntTSL 2 BASIC8.64□□□□□ -1.033e-9■■■■■ 90.3
YBX3P16989 FTH1P8-201ENST00000498161 514 ntBASIC6.78□□□□□ -1.325e-27■■■■■ 81.5
YBX3P16989 RPS10P28-201ENST00000480396 498 ntBASIC10.39□□□□□ -0.753e-6■■■■■ 79.8
YBX3P16989 SRPRA-207ENST00000532268 829 ntTSL 211.63□□□□□ -0.554e-11■■■■■ 74.4
YBX3P16989 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC16.82■□□□□ 0.284e-7■■■■■ 69.9
YBX3P16989 SRPRA-201ENST00000332118 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.044e-7■■■■■ 69.9
YBX3P16989 AP001347.1-201ENST00000428809 1332 ntTSL 1 (best) BASIC10.84□□□□□ -0.675e-8■■■■■ 67.4
YBX3P16989 AP001347.1-202ENST00000432621 1084 ntTSL 1 (best)10.39□□□□□ -0.755e-8■■■■■ 67.4
YBX3P16989 RPS4XP6-201ENST00000477670 797 ntBASIC6.61□□□□□ -1.358e-22■■■■■ 65.7
YBX3P16989 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.42□□□□□ -1.388e-13■■■■■ 63.5
YBX3P16989 LINC01029-201ENST00000577408 1249 nt20.87■□□□□ 0.933e-9■■■■■ 59.9
YBX3P16989 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC17.68■□□□□ 0.423e-9■■■■■ 59.9
YBX3P16989 ZNF90-202ENST00000469078 1918 ntTSL 514.66□□□□□ -0.064e-12■■■■■ 54.2
YBX3P16989 AC011447.1-201ENST00000497576 441 ntBASIC13.67□□□□□ -0.224e-12■■■■■ 54.2
YBX3P16989 ZNF90-204ENST00000474284 1724 ntTSL 512.85□□□□□ -0.354e-12■■■■■ 54.2
YBX3P16989 FAM171A2-202ENST00000588067 964 ntTSL 532.19■■■□□ 2.742e-15■■■■■ 53.7
YBX3P16989 FAM171A2-204ENST00000592560 758 ntTSL 229.04■■■□□ 2.242e-15■■■■■ 53.7
YBX3P16989 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.062e-15■■■■■ 53.7
YBX3P16989 FAM171A2-203ENST00000589407 1066 ntTSL 319.54■□□□□ 0.722e-15■■■■■ 53.7
YBX3P16989 RALB-208ENST00000631312 311 ntTSL 5 BASIC31.2■■■□□ 2.592e-16■■■■■ 53.6
YBX3P16989 RALB-204ENST00000431732 767 ntTSL 530.97■■■□□ 2.552e-16■■■■■ 53.6
YBX3P16989 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC30.03■■■□□ 2.42e-16■■■■■ 53.6
YBX3P16989 RALB-206ENST00000449649 667 ntTSL 521.55■■□□□ 1.042e-16■■■■■ 53.6
YBX3P16989 RALB-202ENST00000412383 981 ntTSL 320.84■□□□□ 0.932e-16■■■■■ 53.6
YBX3P16989 RALB-205ENST00000447591 558 ntTSL 419.33■□□□□ 0.682e-16■■■■■ 53.6
YBX3P16989 CCT3-213ENST00000489870 827 ntTSL 212.86□□□□□ -0.355e-27■■■■■ 53.3
YBX3P16989 AL356535.1-201ENST00000440335 398 ntBASIC4.22□□□□□ -1.731e-14■■■■■ 51.9
YBX3P16989 PHC2-212ENST00000493483 760 ntTSL 330.31■■■□□ 2.444e-10■■■■■ 51.8
YBX3P16989 PHC2-208ENST00000473158 523 ntTSL 319.13■□□□□ 0.654e-10■■■■■ 51.8
YBX3P16989 PHC2-211ENST00000486897 547 ntTSL 511.97□□□□□ -0.494e-10■■■■■ 51.8
YBX3P16989 AC104619.3-201ENST00000509116 1387 ntBASIC10.51□□□□□ -0.732e-27■■■■■ 51.7
YBX3P16989 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC30.92■■■□□ 2.542e-8■■■■■ 51.7
YBX3P16989 RPL31-201ENST00000264258 1865 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.582e-8■■■■■ 51.7
YBX3P16989 RPL31-203ENST00000409028 1110 ntTSL 2 BASIC10.7□□□□□ -0.72e-8■■■■■ 51.7
YBX3P16989 RPL31-204ENST00000409038 817 ntTSL 2 BASIC8.46□□□□□ -1.062e-8■■■■■ 51.7
YBX3P16989 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC8.12□□□□□ -1.112e-8■■■■■ 51.7
YBX3P16989 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC7.25□□□□□ -1.252e-8■■■■■ 51.7
YBX3P16989 DNAJA1-203ENST00000495015 604 ntTSL 310.23□□□□□ -0.772e-7■■■■■ 51.6
YBX3P16989 MED30-204ENST00000522839 476 ntTSL 1 (best) BASIC11.82□□□□□ -0.522e-15■■■■■ 51.3
YBX3P16989 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC6.91□□□□□ -1.39e-8■■■■■ 50
YBX3P16989 NCBP1-201ENST00000375130 728 ntTSL 35.19□□□□□ -1.581e-7■■■■■ 49.3
YBX3P16989 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.215e-7■■■■■ 48.2
YBX3P16989 PRPF40A-203ENST00000448428 490 ntTSL 516.76■□□□□ 0.271e-8■■■■■ 47.2
YBX3P16989 PRPF40A-205ENST00000467114 546 ntTSL 48.43□□□□□ -1.061e-8■■■■■ 47.2
YBX3P16989 CARM1-206ENST00000588947 468 ntTSL 540.98■■■■■ 4.154e-21■■■■■ 46.8
YBX3P16989 CARM1-208ENST00000590039 596 ntTSL 516.58■□□□□ 0.244e-21■■■■■ 46.8
YBX3P16989 CARM1-207ENST00000589693 601 ntTSL 514.89□□□□□ -0.034e-21■■■■■ 46.8
YBX3P16989 RALB-207ENST00000470417 1931 ntTSL 327.08■■□□□ 1.931e-7■■■■■ 46.2
YBX3P16989 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.451e-7■■■■■ 46.2
YBX3P16989 Y_RNA.548-201ENST00000384656 105 ntBASIC6.55□□□□□ -1.362e-16■■■■■ 46
YBX3P16989 SLC2A9-206ENST00000505104 1659 ntTSL 1 (best)20.48■□□□□ 0.872e-9■■■■■ 45.6
YBX3P16989 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.462e-9■■■■■ 45.6
YBX3P16989 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.372e-9■■■■■ 45.6
YBX3P16989 SLC2A9-208ENST00000506583 1927 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.112e-9■■■■■ 45.6
YBX3P16989 SLC2A9-213ENST00000513129 738 ntTSL 312.39□□□□□ -0.432e-9■■■■■ 45.6
YBX3P16989 PISD-215ENST00000479851 655 ntTSL 327.18■■□□□ 1.948e-15■■■■■ 45.2
YBX3P16989 PISD-205ENST00000429683 609 ntTSL 321.15■□□□□ 0.988e-15■■■■■ 45.2
YBX3P16989 PISD-206ENST00000431201 460 ntTSL 421.15■□□□□ 0.988e-15■■■■■ 45.2
YBX3P16989 PISD-213ENST00000474017 1760 ntTSL 520.54■□□□□ 0.888e-15■■■■■ 45.2
YBX3P16989 PISD-217ENST00000491342 692 ntTSL 519.96■□□□□ 0.798e-15■■■■■ 45.2
YBX3P16989 PISD-216ENST00000486675 837 ntTSL 318.34■□□□□ 0.538e-15■■■■■ 45.2
YBX3P16989 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.198e-15■■■■■ 45.2
YBX3P16989 PISD-207ENST00000435900 1723 ntTSL 513.41□□□□□ -0.268e-15■■■■■ 45.2
YBX3P16989 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.482e-10■■■■■ 44.8
YBX3P16989 BLMH-202ENST00000577290 586 ntTSL 420.87■□□□□ 0.933e-12■■■■■ 44.4
YBX3P16989 BLMH-212ENST00000582749 769 ntTSL 219.78■□□□□ 0.763e-12■■■■■ 44.4
YBX3P16989 BLMH-209ENST00000580709 561 ntTSL 417.64■□□□□ 0.413e-12■■■■■ 44.4
YBX3P16989 BLMH-204ENST00000577623 823 ntTSL 516.72■□□□□ 0.273e-12■■■■■ 44.4
YBX3P16989 Y_RNA.7-201ENST00000362352 102 ntBASIC4.29□□□□□ -1.723e-29■■■■■ 44.2
YBX3P16989 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.372e-8■■■■■ 43.4
YBX3P16989 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC19.12■□□□□ 0.652e-8■■■■■ 43.4
YBX3P16989 HDLBP-223ENST00000449864 529 ntTSL 520.84■□□□□ 0.935e-12■■■■■ 43.2
YBX3P16989 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC22.97■■□□□ 1.271e-13■■■■■ 42.9
YBX3P16989 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.661e-13■■■■■ 42.9
YBX3P16989 PHC2-206ENST00000467894 1466 ntTSL 529.56■■■□□ 2.328e-9■■■■■ 42.8
YBX3P16989 PRPF40A-211ENST00000493468 1043 ntTSL 1 (best)20.36■□□□□ 0.851e-8■■■■■ 42.6
YBX3P16989 PRPF40A-201ENST00000354363 1622 ntTSL 219.8■□□□□ 0.761e-8■■■■■ 42.6
YBX3P16989 PRPF40A-212ENST00000545856 1358 ntTSL 1 (best)19.32■□□□□ 0.681e-8■■■■■ 42.6
YBX3P16989 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.68□□□□□ -0.061e-323■■■■■ 41.7
YBX3P16989 HACD3-204ENST00000562832 789 ntTSL 54.73□□□□□ -1.651e-6■■■■■ 41.6
YBX3P16989 HACD3-208ENST00000566239 393 ntTSL 218.07■□□□□ 0.486e-7■■■■■ 40.8
YBX3P16989 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.36e-7■■■■■ 40.5
YBX3P16989 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.5■□□□□ 0.236e-7■■■■■ 40.5
YBX3P16989 PTPRN2-202ENST00000389416 4692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.226e-7■■■■■ 40.5
YBX3P16989 PTPRN2-203ENST00000389418 4706 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.286e-7■■■■■ 40.5
YBX3P16989 BRD7-203ENST00000401491 1338 ntTSL 536.48■■■■□ 3.434e-12■■■■■ 40.5
YBX3P16989 BRD7-206ENST00000567826 740 ntTSL 536.32■■■■□ 3.44e-12■■■■■ 40.5
YBX3P16989 CCDC57-214ENST00000582040 330 ntTSL 319.73■□□□□ 0.753e-7■■■■■ 40.2
YBX3P16989 CCDC57-207ENST00000419322 2829 ntAPPRIS ALT2 TSL 515.3■□□□□ 0.043e-7■■■■■ 40.2
YBX3P16989 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.243e-7■■■■■ 40.2
YBX3P16989 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.243e-7■■■■■ 40.2
YBX3P16989 CCDC57-205ENST00000392346 2964 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.373e-7■■■■■ 40.2
YBX3P16989 SUPT4H1-206ENST00000581204 539 ntTSL 211.61□□□□□ -0.558e-11■■■■■ 40.1
YBX3P16989 TRAP1-207ENST00000571804 781 ntTSL 530.09■■■□□ 2.413e-12■■■■■ 39.8
YBX3P16989 TRAP1-215ENST00000576106 555 ntTSL 430■■■□□ 2.393e-12■■■■■ 39.8
Retrieved 100 of 29,075 protein–RNA pairs in 139.7 ms