RNA–Protein interactions for RNA: ENST00000338193.10

PRIM1-201, Transcript of DNA primase subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRIM1, Length 1,393 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRIM1-201ENST00000338193 AEBP2Q6ZN18 517 aaPredicted RBP32.32■■■□□ 2.77
PRIM1-201ENST00000338193 CHIC1Q5VXU3 224 aa30.2■■■□□ 2.43
PRIM1-201ENST00000338193 NISCHQ9Y2I1 1504 aa30.11■■■□□ 2.41
PRIM1-201ENST00000338193 SENP3Q9H4L4 574 aaPredicted RBP27.69■■■□□ 2.02
PRIM1-201ENST00000338193 PHF23Q9BUL5 403 aaPredicted RBP27.21■■□□□ 1.95
PRIM1-201ENST00000338193 CCDC180Q9P1Z9 1646 aa26.58■■□□□ 1.85
PRIM1-201ENST00000338193 FOXD1Q16676 465 aa25.87■■□□□ 1.73
PRIM1-201ENST00000338193 ABCC9O60706 1549 aa25.78■■□□□ 1.72
PRIM1-201ENST00000338193 ZCCHC6Q5VYS8 1495 aaKnown RBP25.17■■□□□ 1.62
PRIM1-201ENST00000338193 DCAF8L2P0C7V8 631 aa25■■□□□ 1.59
PRIM1-201ENST00000338193 POTEDQ86YR6 584 aa24.97■■□□□ 1.59
PRIM1-201ENST00000338193 NACADO15069 1562 aa24.87■■□□□ 1.57
PRIM1-201ENST00000338193 DCAF1Q9Y4B6 1507 aa24.85■■□□□ 1.57
PRIM1-201ENST00000338193 RB1CC1Q8TDY2 1594 aa24.83■■□□□ 1.57
PRIM1-201ENST00000338193 MYO15BQ96JP2 1530 aa24.79■■□□□ 1.56
PRIM1-201ENST00000338193 MSH5O43196 834 aa24.47■■□□□ 1.51
PRIM1-201ENST00000338193 UNC13AQ9UPW8 1703 aa24.46■■□□□ 1.51
PRIM1-201ENST00000338193 SCRIBQ14160 1630 aa24.39■■□□□ 1.5
PRIM1-201ENST00000338193 BICRAQ9NZM4 1560 aa24.22■■□□□ 1.47
PRIM1-201ENST00000338193 PABPN1Q86U42 306 aaKnown RBP eCLIP24.16■■□□□ 1.46
PRIM1-201ENST00000338193 SHROOM4Q9ULL8 1493 aa24.1■■□□□ 1.45
PRIM1-201ENST00000338193 PIAS4Q8N2W9 510 aaPredicted RBP24.01■■□□□ 1.43
PRIM1-201ENST00000338193 PLPPR3Q6T4P5 718 aa23.74■■□□□ 1.39
PRIM1-201ENST00000338193 PPP6R1Q9UPN7 881 aa23.68■■□□□ 1.38
PRIM1-201ENST00000338193 ADRA2BP18089 450 aa23.55■■□□□ 1.36
PRIM1-201ENST00000338193 CECR2Q9BXF3 1484 aa23.52■■□□□ 1.36
PRIM1-201ENST00000338193 EIF4G1Q04637 1599 aaKnown RBP23.48■■□□□ 1.35
PRIM1-201ENST00000338193 DNAJC5BQ9UF47 199 aa23.42■■□□□ 1.34
PRIM1-201ENST00000338193 CC2D2AQ9P2K1 1620 aa23.33■■□□□ 1.32
PRIM1-201ENST00000338193 SMARCA4P51532 1647 aa23.32■■□□□ 1.32
PRIM1-201ENST00000338193 MROH2BQ7Z745 1585 aa23.29■■□□□ 1.32
PRIM1-201ENST00000338193 BAZ1AQ9NRL2 1556 aaPredicted RBP23.26■■□□□ 1.31
PRIM1-201ENST00000338193 RSF1Q96T23 1441 aaPredicted RBP23.1■■□□□ 1.29
PRIM1-201ENST00000338193 WIZO95785 1651 aa23.08■■□□□ 1.29
PRIM1-201ENST00000338193 ATAD2BQ9ULI0 1458 aa23.08■■□□□ 1.28
PRIM1-201ENST00000338193 PEG3Q9GZU2 1588 aa23.04■■□□□ 1.28
PRIM1-201ENST00000338193 SMARCA2P51531 1590 aa23■■□□□ 1.27
PRIM1-201ENST00000338193 NCAPD3P42695 1498 aa22.96■■□□□ 1.27
PRIM1-201ENST00000338193 HMGXB3Q12766 1538 aa22.89■■□□□ 1.26
PRIM1-201ENST00000338193 BAZ1BQ9UIG0 1483 aaKnown RBP22.88■■□□□ 1.25
PRIM1-201ENST00000338193 SUPT5HO00267 1087 aaKnown RBP22.76■■□□□ 1.23
PRIM1-201ENST00000338193 TOP2AP11388 1531 aaKnown RBP22.75■■□□□ 1.23
PRIM1-201ENST00000338193 CCDC88BA6NC98 1476 aa22.52■■□□□ 1.2
PRIM1-201ENST00000338193 NESP48681 1621 aa22.46■■□□□ 1.19
PRIM1-201ENST00000338193 CADPSQ9ULU8 1353 aa22.31■■□□□ 1.16
PRIM1-201ENST00000338193 LAMC3Q9Y6N6 1575 aa22.3■■□□□ 1.16
PRIM1-201ENST00000338193 CFTRP13569 1480 aa22.27■■□□□ 1.16
PRIM1-201ENST00000338193 KIF21AQ7Z4S6 1674 aa22.2■■□□□ 1.14
PRIM1-201ENST00000338193 PRDM2Q13029 1718 aa22.18■■□□□ 1.14
PRIM1-201ENST00000338193 FANCD2Q9BXW9 1451 aa22.1■■□□□ 1.13
PRIM1-201ENST00000338193 PDS5BQ9NTI5 1447 aa22.09■■□□□ 1.13
PRIM1-201ENST00000338193 ERCC6Q03468 1493 aa22.08■■□□□ 1.13
PRIM1-201ENST00000338193 CEP164Q9UPV0 1460 aa22.01■■□□□ 1.11
PRIM1-201ENST00000338193 THOC2Q8NI27 1593 aaKnown RBP22.01■■□□□ 1.11
PRIM1-201ENST00000338193 URB2Q14146 1524 aaKnown RBP21.92■■□□□ 1.1
PRIM1-201ENST00000338193 MRC2Q9UBG0 1479 aa21.91■■□□□ 1.1
PRIM1-201ENST00000338193 ABCC8Q09428 1581 aa21.87■■□□□ 1.09
PRIM1-201ENST00000338193 DMRT2Q9Y5R5 561 aa21.86■■□□□ 1.09
PRIM1-201ENST00000338193 WDR62O43379 1518 aa21.85■■□□□ 1.09
PRIM1-201ENST00000338193 CUX1P39880 1505 aa21.82■■□□□ 1.08
PRIM1-201ENST00000338193 MAPK8IP2Q13387 824 aaPredicted RBP21.81■■□□□ 1.08
PRIM1-201ENST00000338193 TOPBP1Q92547 1522 aa21.81■■□□□ 1.08
PRIM1-201ENST00000338193 DNMBPQ6XZF7 1577 aa21.78■■□□□ 1.08
PRIM1-201ENST00000338193 SYNJ1O43426 1573 aa21.76■■□□□ 1.07
PRIM1-201ENST00000338193 WRNQ14191 1432 aaPredicted RBP eCLIP21.71■■□□□ 1.07
PRIM1-201ENST00000338193 CUX2O14529 1486 aa21.7■■□□□ 1.06
PRIM1-201ENST00000338193 BIVM-ERCC5R4GMW8 1640 aa21.68■■□□□ 1.06
PRIM1-201ENST00000338193 TOP2BQ02880 1626 aa21.66■■□□□ 1.06
PRIM1-201ENST00000338193 POLA1P09884 1462 aaPredicted RBP21.65■■□□□ 1.06
PRIM1-201ENST00000338193 FGD5Q6ZNL6 1462 aa21.65■■□□□ 1.06
PRIM1-201ENST00000338193 RAD54L2Q9Y4B4 1467 aa21.6■■□□□ 1.05
PRIM1-201ENST00000338193 TARBP1Q13395 1621 aaKnown RBP21.58■■□□□ 1.05
PRIM1-201ENST00000338193 SCAF1Q9H7N4 1312 aaKnown RBP21.56■■□□□ 1.04
PRIM1-201ENST00000338193 ZNF608Q9ULD9 1512 aaPredicted RBP21.52■■□□□ 1.04
PRIM1-201ENST00000338193 SOGA1O94964 1423 aa21.51■■□□□ 1.03
PRIM1-201ENST00000338193 WDR97A6NE52 1622 aa21.51■■□□□ 1.03
PRIM1-201ENST00000338193 IFT140Q96RY7 1462 aa21.51■■□□□ 1.03
PRIM1-201ENST00000338193 EIF4G3O43432 1585 aaKnown RBP21.42■■□□□ 1.02
PRIM1-201ENST00000338193 ABCA10Q8WWZ4 1543 aa21.41■■□□□ 1.02
PRIM1-201ENST00000338193 TDRD9Q8NDG6 1382 aaKnown RBP21.41■■□□□ 1.02
PRIM1-201ENST00000338193 AQRO60306 1485 aaKnown RBP eCLIP21.4■■□□□ 1.028e-8■■■■□ 20.3
PRIM1-201ENST00000338193 TRIM41Q8WV44 630 aa21.39■■□□□ 1.02
PRIM1-201ENST00000338193 ABCA5Q8WWZ7 1642 aa21.36■■□□□ 1.01
PRIM1-201ENST00000338193 CACNB1Q02641 598 aaPredicted RBP21.35■■□□□ 1.01
PRIM1-201ENST00000338193 RUSC2Q8N2Y8 1516 aa21.3■■□□□ 1
PRIM1-201ENST00000338193 PBRM1Q86U86 1689 aa21.29■■□□□ 1
PRIM1-201ENST00000338193 GAPVD1Q14C86 1478 aa21.28■■□□□ 1
PRIM1-201ENST00000338193 GRIN2BQ13224 1484 aa21.21■□□□□ 0.99
PRIM1-201ENST00000338193 SNAPC4Q5SXM2 1469 aa21.2■□□□□ 0.98
PRIM1-201ENST00000338193 KIF27Q86VH2 1401 aa21.18■□□□□ 0.98
PRIM1-201ENST00000338193 ERICH3Q5RHP9 1530 aa21.13■□□□□ 0.97
PRIM1-201ENST00000338193 IGF1RP08069 1367 aa21.13■□□□□ 0.97
PRIM1-201ENST00000338193 ADAMTS12P58397 1594 aa21.12■□□□□ 0.97
PRIM1-201ENST00000338193 CHD1O14646 1710 aa21.12■□□□□ 0.97
PRIM1-201ENST00000338193 MAGI1Q96QZ7 1491 aaPredicted RBP21.1■□□□□ 0.97
PRIM1-201ENST00000338193 FAM9AQ8IZU1 332 aaPredicted RBP21.07■□□□□ 0.96
PRIM1-201ENST00000338193 SYNJ2O15056 1496 aa21.03■□□□□ 0.96
PRIM1-201ENST00000338193 CUL7Q14999 1698 aa21.02■□□□□ 0.96
PRIM1-201ENST00000338193 FHAD1B1AJZ9 1412 aa21.02■□□□□ 0.95
PRIM1-201ENST00000338193 FBLN2P98095 1184 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms