RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 NISCHQ9Y2I1 1504 aa49.22■■■■■ 5.47
VPS28-212ENST00000530836 CCDC180Q9P1Z9 1646 aa43.48■■■■■ 4.55
VPS28-212ENST00000530836 ABCC9O60706 1549 aa42.3■■■■■ 4.36
VPS28-212ENST00000530836 DCAF8L2P0C7V8 631 aa41.07■■■■■ 4.17
VPS28-212ENST00000530836 ZCCHC6Q5VYS8 1495 aaKnown RBP41.06■■■■■ 4.16
VPS28-212ENST00000530836 NACADO15069 1562 aa40.87■■■■■ 4.13
VPS28-212ENST00000530836 RB1CC1Q8TDY2 1594 aa40.81■■■■■ 4.12
VPS28-212ENST00000530836 MYO15BQ96JP2 1530 aa40.78■■■■■ 4.12
VPS28-212ENST00000530836 DCAF1Q9Y4B6 1507 aa40.73■■■■■ 4.11
VPS28-212ENST00000530836 UNC13AQ9UPW8 1703 aa39.77■■■■□ 3.96
VPS28-212ENST00000530836 SCRIBQ14160 1630 aa39.74■■■■□ 3.95
VPS28-212ENST00000530836 PABPN1Q86U42 306 aaKnown RBP eCLIP39.67■■■■□ 3.946e-9■□□□□ 9.8
VPS28-212ENST00000530836 BICRAQ9NZM4 1560 aa39.56■■■■□ 3.92
VPS28-212ENST00000530836 SHROOM4Q9ULL8 1493 aa39.19■■■■□ 3.86
VPS28-212ENST00000530836 DNAJC5BQ9UF47 199 aa38.59■■■■□ 3.77
VPS28-212ENST00000530836 EIF4G1Q04637 1599 aaKnown RBP38.5■■■■□ 3.75
VPS28-212ENST00000530836 CECR2Q9BXF3 1484 aa38.32■■■■□ 3.72
VPS28-212ENST00000530836 CC2D2AQ9P2K1 1620 aa38.24■■■■□ 3.71
VPS28-212ENST00000530836 BAZ1AQ9NRL2 1556 aaPredicted RBP38.1■■■■□ 3.69
VPS28-212ENST00000530836 SMARCA4P51532 1647 aa38.05■■■■□ 3.68
VPS28-212ENST00000530836 MROH2BQ7Z745 1585 aa37.93■■■■□ 3.66
VPS28-212ENST00000530836 ATAD2BQ9ULI0 1458 aa37.83■■■■□ 3.65
VPS28-212ENST00000530836 NCAPD3P42695 1498 aa37.77■■■■□ 3.64
VPS28-212ENST00000530836 SMARCA2P51531 1590 aa37.76■■■■□ 3.64
VPS28-212ENST00000530836 PEG3Q9GZU2 1588 aa37.7■■■■□ 3.63
VPS28-212ENST00000530836 RSF1Q96T23 1441 aaPredicted RBP37.68■■■■□ 3.62
VPS28-212ENST00000530836 SUPT5HO00267 1087 aaKnown RBP37.54■■■■□ 3.6
VPS28-212ENST00000530836 HMGXB3Q12766 1538 aa37.54■■■■□ 3.6
VPS28-212ENST00000530836 BAZ1BQ9UIG0 1483 aaKnown RBP37.51■■■■□ 3.6
VPS28-212ENST00000530836 WIZO95785 1651 aa37.49■■■■□ 3.59
VPS28-212ENST00000530836 TOP2AP11388 1531 aaKnown RBP37.14■■■■□ 3.54
VPS28-212ENST00000530836 CCDC88BA6NC98 1476 aa36.76■■■■□ 3.48
VPS28-212ENST00000530836 CADPSQ9ULU8 1353 aa36.71■■■■□ 3.47
VPS28-212ENST00000530836 NESP48681 1621 aa36.71■■■■□ 3.47
VPS28-212ENST00000530836 LAMC3Q9Y6N6 1575 aa36.64■■■■□ 3.46
VPS28-212ENST00000530836 CFTRP13569 1480 aa36.54■■■■□ 3.44
VPS28-212ENST00000530836 PDS5BQ9NTI5 1447 aa36.46■■■■□ 3.43
VPS28-212ENST00000530836 ERCC6Q03468 1493 aa36.43■■■■□ 3.42
VPS28-212ENST00000530836 FANCD2Q9BXW9 1451 aa36.24■■■■□ 3.39
VPS28-212ENST00000530836 KIF21AQ7Z4S6 1674 aa36.18■■■■□ 3.38
VPS28-212ENST00000530836 CEP164Q9UPV0 1460 aa36.14■■■■□ 3.38
VPS28-212ENST00000530836 PRDM2Q13029 1718 aa36.08■■■■□ 3.37
VPS28-212ENST00000530836 MRC2Q9UBG0 1479 aa36.01■■■■□ 3.36
VPS28-212ENST00000530836 THOC2Q8NI27 1593 aaKnown RBP36■■■■□ 3.35
VPS28-212ENST00000530836 CHIC1Q5VXU3 224 aa35.91■■■■□ 3.34
VPS28-212ENST00000530836 CUX2O14529 1486 aa35.91■■■■□ 3.34
VPS28-212ENST00000530836 WDR62O43379 1518 aa35.86■■■■□ 3.33
VPS28-212ENST00000530836 URB2Q14146 1524 aaKnown RBP35.84■■■■□ 3.33
VPS28-212ENST00000530836 ABCC8Q09428 1581 aa35.73■■■■□ 3.31
VPS28-212ENST00000530836 TOPBP1Q92547 1522 aa35.69■■■■□ 3.3
VPS28-212ENST00000530836 DNMBPQ6XZF7 1577 aa35.65■■■■□ 3.3
VPS28-212ENST00000530836 CUX1P39880 1505 aa35.55■■■■□ 3.28
VPS28-212ENST00000530836 WRNQ14191 1432 aaPredicted RBP eCLIP35.5■■■■□ 3.27
VPS28-212ENST00000530836 TRIM41Q8WV44 630 aa35.43■■■■□ 3.26
VPS28-212ENST00000530836 POLA1P09884 1462 aaPredicted RBP35.42■■■■□ 3.26
VPS28-212ENST00000530836 IFT140Q96RY7 1462 aa35.39■■■■□ 3.26
VPS28-212ENST00000530836 FGD5Q6ZNL6 1462 aa35.38■■■■□ 3.25
VPS28-212ENST00000530836 SYNJ1O43426 1573 aa35.33■■■■□ 3.25
VPS28-212ENST00000530836 SOGA1O94964 1423 aa35.33■■■■□ 3.25
VPS28-212ENST00000530836 TOP2BQ02880 1626 aa35.32■■■■□ 3.24
VPS28-212ENST00000530836 RAD54L2Q9Y4B4 1467 aa35.28■■■■□ 3.24
VPS28-212ENST00000530836 BIVM-ERCC5R4GMW8 1640 aa35.28■■■■□ 3.24
VPS28-212ENST00000530836 TARBP1Q13395 1621 aaKnown RBP35.23■■■■□ 3.23
VPS28-212ENST00000530836 ZNF608Q9ULD9 1512 aaPredicted RBP35.2■■■■□ 3.23
VPS28-212ENST00000530836 TDRD9Q8NDG6 1382 aaKnown RBP35.09■■■■□ 3.21
VPS28-212ENST00000530836 AQRO60306 1485 aaKnown RBP eCLIP35.08■■■■□ 3.217e-10■■■■□ 24.3
VPS28-212ENST00000530836 ABCA10Q8WWZ4 1543 aa35.07■■■■□ 3.2
VPS28-212ENST00000530836 EIF4G3O43432 1585 aaKnown RBP34.99■■■■□ 3.19
VPS28-212ENST00000530836 WDR97A6NE52 1622 aa34.96■■■■□ 3.19
VPS28-212ENST00000530836 GAPVD1Q14C86 1478 aa34.9■■■■□ 3.18
VPS28-212ENST00000530836 GRIN2BQ13224 1484 aa34.84■■■■□ 3.17
VPS28-212ENST00000530836 ABCA5Q8WWZ7 1642 aa34.83■■■■□ 3.17
VPS28-212ENST00000530836 KIF27Q86VH2 1401 aa34.74■■■■□ 3.15
VPS28-212ENST00000530836 SNAPC4Q5SXM2 1469 aa34.72■■■■□ 3.15
VPS28-212ENST00000530836 EEA1Q15075 1411 aa34.72■■■■□ 3.15
VPS28-212ENST00000530836 MAGI1Q96QZ7 1491 aaPredicted RBP34.69■■■■□ 3.14
VPS28-212ENST00000530836 PBRM1Q86U86 1689 aa34.65■■■■□ 3.14
VPS28-212ENST00000530836 ERICH3Q5RHP9 1530 aa34.64■■■■□ 3.14
VPS28-212ENST00000530836 FBLN2P98095 1184 aa34.62■■■■□ 3.13
VPS28-212ENST00000530836 FAM9AQ8IZU1 332 aaPredicted RBP34.61■■■■□ 3.13
VPS28-212ENST00000530836 IGF1RP08069 1367 aa34.6■■■■□ 3.13
VPS28-212ENST00000530836 OSCARQ8IYS5 282 aa34.59■■■■□ 3.13
VPS28-212ENST00000530836 CHMP7Q8WUX9 453 aaPredicted RBP34.59■■■■□ 3.13
VPS28-212ENST00000530836 SYNJ2O15056 1496 aa34.56■■■■□ 3.12
VPS28-212ENST00000530836 RUSC2Q8N2Y8 1516 aa34.53■■■■□ 3.12
VPS28-212ENST00000530836 FHAD1B1AJZ9 1412 aa34.52■■■■□ 3.12
VPS28-212ENST00000530836 ADAMTS12P58397 1594 aa34.47■■■■□ 3.11
VPS28-212ENST00000530836 DNAJC5Q9H3Z4 198 aa34.47■■■■□ 3.11
VPS28-212ENST00000530836 CHD1O14646 1710 aa34.43■■■■□ 3.1
VPS28-212ENST00000530836 CSRNP3Q8WYN3 585 aa34.43■■■■□ 3.1
VPS28-212ENST00000530836 LOC105371045A0A1W2PR82 267 aa34.42■■■■□ 3.1
VPS28-212ENST00000530836 CARMIL1Q5VZK9 1371 aa34.39■■■■□ 3.1
VPS28-212ENST00000530836 GRIN2AQ12879 1464 aa34.37■■■■□ 3.09
VPS28-212ENST00000530836 CUL7Q14999 1698 aa34.34■■■■□ 3.09
VPS28-212ENST00000530836 NUP160Q12769 1436 aa34.23■■■■□ 3.07
VPS28-212ENST00000530836 RAPGEF2Q9Y4G8 1499 aa34.19■■■■□ 3.06
VPS28-212ENST00000530836 PRXQ9BXM0 1461 aa34.17■■■■□ 3.06
VPS28-212ENST00000530836 KIF21BO75037 1637 aa34.17■■■■□ 3.06
VPS28-212ENST00000530836 CLASP1Q7Z460 1538 aa34.15■■■■□ 3.06
VPS28-212ENST00000530836 CEP170Q5SW79 1584 aa34.15■■■■□ 3.06
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms