RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 NISCHQ9Y2I1 1504 aa25.15■■□□□ 1.62
VPS28-204ENST00000526054 CCDC180Q9P1Z9 1646 aa22.65■■□□□ 1.22
VPS28-204ENST00000526054 ABCC9O60706 1549 aa22.57■■□□□ 1.2
VPS28-204ENST00000526054 RB1CC1Q8TDY2 1594 aa21.53■■□□□ 1.04
VPS28-204ENST00000526054 NACADO15069 1562 aa21.36■■□□□ 1.01
VPS28-204ENST00000526054 DCAF8L2P0C7V8 631 aa21.15■□□□□ 0.98
VPS28-204ENST00000526054 DNAJC5BQ9UF47 199 aa21.12■□□□□ 0.97
VPS28-204ENST00000526054 UNC13AQ9UPW8 1703 aa21.08■□□□□ 0.97
VPS28-204ENST00000526054 MYO15BQ96JP2 1530 aa21.06■□□□□ 0.96
VPS28-204ENST00000526054 PABPN1Q86U42 306 aaKnown RBP eCLIP20.95■□□□□ 0.946e-9■□□□□ 9.8
VPS28-204ENST00000526054 ZCCHC6Q5VYS8 1495 aaKnown RBP20.88■□□□□ 0.93
VPS28-204ENST00000526054 BICRAQ9NZM4 1560 aa20.87■□□□□ 0.93
VPS28-204ENST00000526054 DCAF1Q9Y4B6 1507 aa20.79■□□□□ 0.92
VPS28-204ENST00000526054 SHROOM4Q9ULL8 1493 aa20.63■□□□□ 0.89
VPS28-204ENST00000526054 SCRIBQ14160 1630 aa20.62■□□□□ 0.89
VPS28-204ENST00000526054 CC2D2AQ9P2K1 1620 aa20.42■□□□□ 0.86
VPS28-204ENST00000526054 EIF4G1Q04637 1599 aaKnown RBP20.38■□□□□ 0.85
VPS28-204ENST00000526054 CECR2Q9BXF3 1484 aa20.33■□□□□ 0.85
VPS28-204ENST00000526054 NCAPD3P42695 1498 aa19.67■□□□□ 0.74
VPS28-204ENST00000526054 SMARCA4P51532 1647 aa19.66■□□□□ 0.74
VPS28-204ENST00000526054 ATAD2BQ9ULI0 1458 aa19.63■□□□□ 0.73
VPS28-204ENST00000526054 SMARCA2P51531 1590 aa19.61■□□□□ 0.73
VPS28-204ENST00000526054 HMGXB3Q12766 1538 aa19.6■□□□□ 0.73
VPS28-204ENST00000526054 BAZ1AQ9NRL2 1556 aaPredicted RBP19.56■□□□□ 0.72
VPS28-204ENST00000526054 ERCC6Q03468 1493 aa19.52■□□□□ 0.72
VPS28-204ENST00000526054 CUX2O14529 1486 aa19.48■□□□□ 0.71
VPS28-204ENST00000526054 BAZ1BQ9UIG0 1483 aaKnown RBP19.48■□□□□ 0.71
VPS28-204ENST00000526054 PEG3Q9GZU2 1588 aa19.46■□□□□ 0.71
VPS28-204ENST00000526054 NESP48681 1621 aa19.38■□□□□ 0.69
VPS28-204ENST00000526054 MROH2BQ7Z745 1585 aa19.38■□□□□ 0.69
VPS28-204ENST00000526054 DNAJC5Q9H3Z4 198 aa19.36■□□□□ 0.69
VPS28-204ENST00000526054 LAMC3Q9Y6N6 1575 aa19.29■□□□□ 0.68
VPS28-204ENST00000526054 THOC2Q8NI27 1593 aaKnown RBP19.25■□□□□ 0.67
VPS28-204ENST00000526054 KIF21AQ7Z4S6 1674 aa19.2■□□□□ 0.66
VPS28-204ENST00000526054 WIZO95785 1651 aa19.17■□□□□ 0.66
VPS28-204ENST00000526054 PDS5BQ9NTI5 1447 aa19.13■□□□□ 0.65
VPS28-204ENST00000526054 CADPSQ9ULU8 1353 aa19.06■□□□□ 0.64
VPS28-204ENST00000526054 MRC2Q9UBG0 1479 aa19■□□□□ 0.63
VPS28-204ENST00000526054 WDR62O43379 1518 aa18.97■□□□□ 0.63
VPS28-204ENST00000526054 RSF1Q96T23 1441 aaPredicted RBP18.95■□□□□ 0.62
VPS28-204ENST00000526054 TOP2AP11388 1531 aaKnown RBP18.95■□□□□ 0.62
VPS28-204ENST00000526054 CEP164Q9UPV0 1460 aa18.93■□□□□ 0.62
VPS28-204ENST00000526054 FANCD2Q9BXW9 1451 aa18.9■□□□□ 0.62
VPS28-204ENST00000526054 CFTRP13569 1480 aa18.87■□□□□ 0.61
VPS28-204ENST00000526054 PRDM2Q13029 1718 aa18.8■□□□□ 0.6
VPS28-204ENST00000526054 URB2Q14146 1524 aaKnown RBP18.74■□□□□ 0.59
VPS28-204ENST00000526054 CCDC88BA6NC98 1476 aa18.67■□□□□ 0.58
VPS28-204ENST00000526054 TRIM41Q8WV44 630 aa18.55■□□□□ 0.56
VPS28-204ENST00000526054 TOPBP1Q92547 1522 aa18.54■□□□□ 0.56
VPS28-204ENST00000526054 IFT140Q96RY7 1462 aa18.54■□□□□ 0.56
VPS28-204ENST00000526054 OSCARQ8IYS5 282 aa18.5■□□□□ 0.55
VPS28-204ENST00000526054 DNMBPQ6XZF7 1577 aa18.5■□□□□ 0.55
VPS28-204ENST00000526054 ZNF608Q9ULD9 1512 aaPredicted RBP18.49■□□□□ 0.55
VPS28-204ENST00000526054 ABCC8Q09428 1581 aa18.49■□□□□ 0.55
VPS28-204ENST00000526054 EIF4G3O43432 1585 aaKnown RBP18.47■□□□□ 0.55
VPS28-204ENST00000526054 TARBP1Q13395 1621 aaKnown RBP18.38■□□□□ 0.53
VPS28-204ENST00000526054 RIMBP3CA6NJZ7 1639 aa18.36■□□□□ 0.53
VPS28-204ENST00000526054 RIMBP3BA6NNM3 1639 aa18.36■□□□□ 0.53
VPS28-204ENST00000526054 RIMBP3Q9UFD9 1639 aa18.36■□□□□ 0.53
VPS28-204ENST00000526054 POLA1P09884 1462 aaPredicted RBP18.35■□□□□ 0.53
VPS28-204ENST00000526054 CHD1O14646 1710 aa18.33■□□□□ 0.52
VPS28-204ENST00000526054 AQRO60306 1485 aaKnown RBP eCLIP18.3■□□□□ 0.527e-10■■■■□ 24.3
VPS28-204ENST00000526054 ARHGEF11O15085 1522 aa18.28■□□□□ 0.52
VPS28-204ENST00000526054 RAD54L2Q9Y4B4 1467 aa18.26■□□□□ 0.51
VPS28-204ENST00000526054 FGD5Q6ZNL6 1462 aa18.25■□□□□ 0.51
VPS28-204ENST00000526054 WDR97A6NE52 1622 aa18.23■□□□□ 0.51
VPS28-204ENST00000526054 SOGA1O94964 1423 aa18.23■□□□□ 0.51
VPS28-204ENST00000526054 CUX1P39880 1505 aa18.22■□□□□ 0.51
VPS28-204ENST00000526054 TDRD9Q8NDG6 1382 aaKnown RBP18.18■□□□□ 0.5
VPS28-204ENST00000526054 FBLN2P98095 1184 aa18.17■□□□□ 0.5
VPS28-204ENST00000526054 SNAPC4Q5SXM2 1469 aa18.17■□□□□ 0.5
VPS28-204ENST00000526054 MAGI1Q96QZ7 1491 aaPredicted RBP18.12■□□□□ 0.49
VPS28-204ENST00000526054 PBRM1Q86U86 1689 aa18.11■□□□□ 0.49
VPS28-204ENST00000526054 GRIN2BQ13224 1484 aa18.1■□□□□ 0.49
VPS28-204ENST00000526054 ARAP1Q96P48 1450 aa18.1■□□□□ 0.49
VPS28-204ENST00000526054 SUPT5HO00267 1087 aaKnown RBP18.1■□□□□ 0.49
VPS28-204ENST00000526054 SYNJ1O43426 1573 aa18.08■□□□□ 0.49
VPS28-204ENST00000526054 CLASP1Q7Z460 1538 aa18.08■□□□□ 0.49
VPS28-204ENST00000526054 CYB5RLQ6IPT4 315 aa18.07■□□□□ 0.48
VPS28-204ENST00000526054 SYNJ2O15056 1496 aa18.05■□□□□ 0.48
VPS28-204ENST00000526054 ABCA5Q8WWZ7 1642 aa18.05■□□□□ 0.48
VPS28-204ENST00000526054 GAPVD1Q14C86 1478 aa18.03■□□□□ 0.48
VPS28-204ENST00000526054 CHMP7Q8WUX9 453 aaPredicted RBP18.03■□□□□ 0.48
VPS28-204ENST00000526054 ABCA10Q8WWZ4 1543 aa18.03■□□□□ 0.48
VPS28-204ENST00000526054 BIVM-ERCC5R4GMW8 1640 aa17.97■□□□□ 0.47
VPS28-204ENST00000526054 TOP2BQ02880 1626 aa17.95■□□□□ 0.46
VPS28-204ENST00000526054 WRNQ14191 1432 aaPredicted RBP eCLIP17.94■□□□□ 0.46
VPS28-204ENST00000526054 ADAMTS12P58397 1594 aa17.91■□□□□ 0.46
VPS28-204ENST00000526054 TRHP20396 242 aaPredicted RBP17.89■□□□□ 0.45
VPS28-204ENST00000526054 GRIN2AQ12879 1464 aa17.88■□□□□ 0.45
VPS28-204ENST00000526054 CEP170Q5SW79 1584 aa17.83■□□□□ 0.45
VPS28-204ENST00000526054 ERICH3Q5RHP9 1530 aa17.82■□□□□ 0.44
VPS28-204ENST00000526054 FHAD1B1AJZ9 1412 aa17.81■□□□□ 0.44
VPS28-204ENST00000526054 NUP160Q12769 1436 aa17.81■□□□□ 0.44
VPS28-204ENST00000526054 ERCC6L2Q5T890 1561 aa17.78■□□□□ 0.44
VPS28-204ENST00000526054 SHROOM2Q13796 1616 aa17.77■□□□□ 0.44
VPS28-204ENST00000526054 RUSC2Q8N2Y8 1516 aa17.67■□□□□ 0.42
VPS28-204ENST00000526054 PRG4Q92954 1404 aaPredicted RBP17.62■□□□□ 0.41
VPS28-204ENST00000526054 CUL7Q14999 1698 aa17.6■□□□□ 0.41
VPS28-204ENST00000526054 KIF27Q86VH2 1401 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms