RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 NISCHQ9Y2I1 1504 aa43.27■■■■■ 4.52
VPS28-207ENST00000526977 CCDC180Q9P1Z9 1646 aa37.91■■■■□ 3.66
VPS28-207ENST00000526977 ZCCHC6Q5VYS8 1495 aaKnown RBP36.25■■■■□ 3.39
VPS28-207ENST00000526977 ABCC9O60706 1549 aa36.15■■■■□ 3.38
VPS28-207ENST00000526977 DCAF8L2P0C7V8 631 aa35.86■■■■□ 3.33
VPS28-207ENST00000526977 DCAF1Q9Y4B6 1507 aa35.84■■■■□ 3.33
VPS28-207ENST00000526977 MYO15BQ96JP2 1530 aa35.6■■■■□ 3.29
VPS28-207ENST00000526977 NACADO15069 1562 aa35.45■■■■□ 3.27
VPS28-207ENST00000526977 RB1CC1Q8TDY2 1594 aa35.22■■■■□ 3.23
VPS28-207ENST00000526977 SHROOM4Q9ULL8 1493 aa34.9■■■■□ 3.18
VPS28-207ENST00000526977 SCRIBQ14160 1630 aa34.72■■■■□ 3.15
VPS28-207ENST00000526977 UNC13AQ9UPW8 1703 aa34.35■■■■□ 3.09
VPS28-207ENST00000526977 BICRAQ9NZM4 1560 aa34.09■■■■□ 3.05
VPS28-207ENST00000526977 PABPN1Q86U42 306 aaKnown RBP eCLIP34.03■■■■□ 3.046e-9■□□□□ 9.8
VPS28-207ENST00000526977 CECR2Q9BXF3 1484 aa33.6■■■□□ 2.97
VPS28-207ENST00000526977 BAZ1AQ9NRL2 1556 aaPredicted RBP33.46■■■□□ 2.95
VPS28-207ENST00000526977 SUPT5HO00267 1087 aaKnown RBP33.45■■■□□ 2.95
VPS28-207ENST00000526977 RSF1Q96T23 1441 aaPredicted RBP33.4■■■□□ 2.94
VPS28-207ENST00000526977 MROH2BQ7Z745 1585 aa33.36■■■□□ 2.93
VPS28-207ENST00000526977 SMARCA4P51532 1647 aa33.31■■■□□ 2.92
VPS28-207ENST00000526977 EIF4G1Q04637 1599 aaKnown RBP33.13■■■□□ 2.89
VPS28-207ENST00000526977 WIZO95785 1651 aa33.04■■■□□ 2.88
VPS28-207ENST00000526977 PEG3Q9GZU2 1588 aa32.98■■■□□ 2.87
VPS28-207ENST00000526977 ATAD2BQ9ULI0 1458 aa32.9■■■□□ 2.86
VPS28-207ENST00000526977 SMARCA2P51531 1590 aa32.9■■■□□ 2.86
VPS28-207ENST00000526977 TOP2AP11388 1531 aaKnown RBP32.75■■■□□ 2.83
VPS28-207ENST00000526977 NCAPD3P42695 1498 aa32.73■■■□□ 2.83
VPS28-207ENST00000526977 CC2D2AQ9P2K1 1620 aa32.72■■■□□ 2.83
VPS28-207ENST00000526977 BAZ1BQ9UIG0 1483 aaKnown RBP32.69■■■□□ 2.82
VPS28-207ENST00000526977 HMGXB3Q12766 1538 aa32.62■■■□□ 2.81
VPS28-207ENST00000526977 CCDC88BA6NC98 1476 aa32.41■■■□□ 2.78
VPS28-207ENST00000526977 DNAJC5BQ9UF47 199 aa32.25■■■□□ 2.75
VPS28-207ENST00000526977 CHIC1Q5VXU3 224 aa31.92■■■□□ 2.7
VPS28-207ENST00000526977 CFTRP13569 1480 aa31.87■■■□□ 2.69
VPS28-207ENST00000526977 CADPSQ9ULU8 1353 aa31.87■■■□□ 2.69
VPS28-207ENST00000526977 LAMC3Q9Y6N6 1575 aa31.66■■■□□ 2.66
VPS28-207ENST00000526977 PRDM2Q13029 1718 aa31.59■■■□□ 2.65
VPS28-207ENST00000526977 NESP48681 1621 aa31.59■■■□□ 2.65
VPS28-207ENST00000526977 TRIM41Q8WV44 630 aa31.56■■■□□ 2.64
VPS28-207ENST00000526977 ABCC8Q09428 1581 aa31.52■■■□□ 2.64
VPS28-207ENST00000526977 WRNQ14191 1432 aaPredicted RBP eCLIP31.47■■■□□ 2.63
VPS28-207ENST00000526977 PDS5BQ9NTI5 1447 aa31.47■■■□□ 2.63
VPS28-207ENST00000526977 FANCD2Q9BXW9 1451 aa31.46■■■□□ 2.63
VPS28-207ENST00000526977 CEP164Q9UPV0 1460 aa31.31■■■□□ 2.6
VPS28-207ENST00000526977 SYNJ1O43426 1573 aa31.27■■■□□ 2.6
VPS28-207ENST00000526977 TOP2BQ02880 1626 aa31.24■■■□□ 2.59
VPS28-207ENST00000526977 CUX1P39880 1505 aa31.22■■■□□ 2.59
VPS28-207ENST00000526977 BIVM-ERCC5R4GMW8 1640 aa31.19■■■□□ 2.58
VPS28-207ENST00000526977 KIF21AQ7Z4S6 1674 aa31.19■■■□□ 2.58
VPS28-207ENST00000526977 DNMBPQ6XZF7 1577 aa31.1■■■□□ 2.57
VPS28-207ENST00000526977 ERCC6Q03468 1493 aa31.09■■■□□ 2.57
VPS28-207ENST00000526977 TOPBP1Q92547 1522 aa31.06■■■□□ 2.56
VPS28-207ENST00000526977 URB2Q14146 1524 aaKnown RBP31.06■■■□□ 2.56
VPS28-207ENST00000526977 MRC2Q9UBG0 1479 aa31.03■■■□□ 2.56
VPS28-207ENST00000526977 FGD5Q6ZNL6 1462 aa30.96■■■□□ 2.55
VPS28-207ENST00000526977 SOGA1O94964 1423 aa30.89■■■□□ 2.54
VPS28-207ENST00000526977 POLA1P09884 1462 aaPredicted RBP30.88■■■□□ 2.53
VPS28-207ENST00000526977 EEA1Q15075 1411 aa30.88■■■□□ 2.53
VPS28-207ENST00000526977 WDR62O43379 1518 aa30.87■■■□□ 2.53
VPS28-207ENST00000526977 FAM9AQ8IZU1 332 aaPredicted RBP30.86■■■□□ 2.53
VPS28-207ENST00000526977 THOC2Q8NI27 1593 aaKnown RBP30.81■■■□□ 2.52
VPS28-207ENST00000526977 LOC105371045A0A1W2PR82 267 aa30.8■■■□□ 2.52
VPS28-207ENST00000526977 RUSC2Q8N2Y8 1516 aa30.77■■■□□ 2.52
VPS28-207ENST00000526977 RAD54L2Q9Y4B4 1467 aa30.75■■■□□ 2.51
VPS28-207ENST00000526977 KIF27Q86VH2 1401 aa30.74■■■□□ 2.51
VPS28-207ENST00000526977 CSRNP3Q8WYN3 585 aa30.73■■■□□ 2.51
VPS28-207ENST00000526977 ABCA10Q8WWZ4 1543 aa30.72■■■□□ 2.51
VPS28-207ENST00000526977 CUX2O14529 1486 aa30.7■■■□□ 2.5
VPS28-207ENST00000526977 IFT140Q96RY7 1462 aa30.62■■■□□ 2.49
VPS28-207ENST00000526977 TARBP1Q13395 1621 aaKnown RBP30.61■■■□□ 2.49
VPS28-207ENST00000526977 WDR97A6NE52 1622 aa30.56■■■□□ 2.48
VPS28-207ENST00000526977 TDRD9Q8NDG6 1382 aaKnown RBP30.52■■■□□ 2.48
VPS28-207ENST00000526977 IGF1RP08069 1367 aa30.5■■■□□ 2.47
VPS28-207ENST00000526977 GAPVD1Q14C86 1478 aa30.46■■■□□ 2.47
VPS28-207ENST00000526977 ABCA5Q8WWZ7 1642 aa30.45■■■□□ 2.46
VPS28-207ENST00000526977 PRXQ9BXM0 1461 aa30.41■■■□□ 2.46
VPS28-207ENST00000526977 KIF21BO75037 1637 aa30.4■■■□□ 2.46
VPS28-207ENST00000526977 AQRO60306 1485 aaKnown RBP eCLIP30.38■■■□□ 2.457e-10■■■■□ 24.3
VPS28-207ENST00000526977 EHMT2Q96KQ7 1210 aa30.38■■■□□ 2.45
VPS28-207ENST00000526977 ZNF608Q9ULD9 1512 aaPredicted RBP30.38■■■□□ 2.45
VPS28-207ENST00000526977 ERICH3Q5RHP9 1530 aa30.37■■■□□ 2.45
VPS28-207ENST00000526977 GOLGA3Q08378 1498 aa30.36■■■□□ 2.45
VPS28-207ENST00000526977 CARMIL1Q5VZK9 1371 aa30.34■■■□□ 2.45
VPS28-207ENST00000526977 GRIN2BQ13224 1484 aa30.3■■■□□ 2.44
VPS28-207ENST00000526977 RAPGEF2Q9Y4G8 1499 aa30.29■■■□□ 2.44
VPS28-207ENST00000526977 UBTFP17480 764 aaKnown RBP30.27■■■□□ 2.44
VPS28-207ENST00000526977 CUL7Q14999 1698 aa30.27■■■□□ 2.44
VPS28-207ENST00000526977 EIF4G3O43432 1585 aaKnown RBP30.26■■■□□ 2.43
VPS28-207ENST00000526977 PBRM1Q86U86 1689 aa30.23■■■□□ 2.43
VPS28-207ENST00000526977 TNIKQ9UKE5 1360 aa30.22■■■□□ 2.43
VPS28-207ENST00000526977 FHAD1B1AJZ9 1412 aa30.15■■■□□ 2.42
VPS28-207ENST00000526977 MAGI1Q96QZ7 1491 aaPredicted RBP30.09■■■□□ 2.41
VPS28-207ENST00000526977 SNAPC4Q5SXM2 1469 aa30.09■■■□□ 2.41
VPS28-207ENST00000526977 ADAMTS12P58397 1594 aa30.07■■■□□ 2.4
VPS28-207ENST00000526977 SYNJ2O15056 1496 aa29.97■■■□□ 2.39
VPS28-207ENST00000526977 CEP162Q5TB80 1403 aa29.97■■■□□ 2.39
VPS28-207ENST00000526977 CHMP7Q8WUX9 453 aaPredicted RBP29.96■■■□□ 2.39
VPS28-207ENST00000526977 GRIN2AQ12879 1464 aa29.9■■■□□ 2.38
VPS28-207ENST00000526977 FBLN2P98095 1184 aa29.87■■■□□ 2.37
VPS28-207ENST00000526977 CLIP1P30622 1438 aa29.86■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms