RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 NISCHQ9Y2I1 1504 aa46.23■■■■■ 4.99
VPS28-209ENST00000528142 CCDC180Q9P1Z9 1646 aa40.31■■■■■ 4.04
VPS28-209ENST00000528142 ZCCHC6Q5VYS8 1495 aaKnown RBP38.9■■■■□ 3.82
VPS28-209ENST00000528142 ABCC9O60706 1549 aa38.52■■■■□ 3.76
VPS28-209ENST00000528142 DCAF1Q9Y4B6 1507 aa38.2■■■■□ 3.71
VPS28-209ENST00000528142 DCAF8L2P0C7V8 631 aa38.14■■■■□ 3.7
VPS28-209ENST00000528142 SHROOM4Q9ULL8 1493 aa37.98■■■■□ 3.67
VPS28-209ENST00000528142 MYO15BQ96JP2 1530 aa37.74■■■■□ 3.63
VPS28-209ENST00000528142 NACADO15069 1562 aa37.62■■■■□ 3.61
VPS28-209ENST00000528142 RB1CC1Q8TDY2 1594 aa37.37■■■■□ 3.57
VPS28-209ENST00000528142 SCRIBQ14160 1630 aa37.09■■■■□ 3.53
VPS28-209ENST00000528142 UNC13AQ9UPW8 1703 aa36.75■■■■□ 3.47
VPS28-209ENST00000528142 SUPT5HO00267 1087 aaKnown RBP36.71■■■■□ 3.47
VPS28-209ENST00000528142 BICRAQ9NZM4 1560 aa36.41■■■■□ 3.42
VPS28-209ENST00000528142 PABPN1Q86U42 306 aaKnown RBP eCLIP36.27■■■■□ 3.46e-9■□□□□ 9.8
VPS28-209ENST00000528142 RSF1Q96T23 1441 aaPredicted RBP36.04■■■■□ 3.36
VPS28-209ENST00000528142 CECR2Q9BXF3 1484 aa35.95■■■■□ 3.35
VPS28-209ENST00000528142 MROH2BQ7Z745 1585 aa35.75■■■■□ 3.31
VPS28-209ENST00000528142 BAZ1AQ9NRL2 1556 aaPredicted RBP35.63■■■■□ 3.29
VPS28-209ENST00000528142 SMARCA4P51532 1647 aa35.52■■■■□ 3.28
VPS28-209ENST00000528142 WIZO95785 1651 aa35.43■■■■□ 3.26
VPS28-209ENST00000528142 CHIC1Q5VXU3 224 aa35.35■■■■□ 3.25
VPS28-209ENST00000528142 EIF4G1Q04637 1599 aaKnown RBP35.26■■■■□ 3.24
VPS28-209ENST00000528142 PEG3Q9GZU2 1588 aa35.1■■■■□ 3.21
VPS28-209ENST00000528142 TOP2AP11388 1531 aaKnown RBP35.07■■■■□ 3.2
VPS28-209ENST00000528142 ATAD2BQ9ULI0 1458 aa35.03■■■■□ 3.2
VPS28-209ENST00000528142 SMARCA2P51531 1590 aa34.92■■■■□ 3.18
VPS28-209ENST00000528142 CC2D2AQ9P2K1 1620 aa34.84■■■■□ 3.17
VPS28-209ENST00000528142 CCDC88BA6NC98 1476 aa34.77■■■■□ 3.16
VPS28-209ENST00000528142 NCAPD3P42695 1498 aa34.77■■■■□ 3.16
VPS28-209ENST00000528142 BAZ1BQ9UIG0 1483 aaKnown RBP34.76■■■■□ 3.16
VPS28-209ENST00000528142 HMGXB3Q12766 1538 aa34.67■■■■□ 3.14
VPS28-209ENST00000528142 TRIM41Q8WV44 630 aa34.47■■■■□ 3.11
VPS28-209ENST00000528142 DNAJC5BQ9UF47 199 aa34.42■■■■□ 3.1
VPS28-209ENST00000528142 ABCC8Q09428 1581 aa34.11■■■■□ 3.05
VPS28-209ENST00000528142 LOC105371045A0A1W2PR82 267 aa34.02■■■■□ 3.04
VPS28-209ENST00000528142 CFTRP13569 1480 aa33.91■■■■□ 3.02
VPS28-209ENST00000528142 FAM9AQ8IZU1 332 aaPredicted RBP33.87■■■■□ 3.01
VPS28-209ENST00000528142 WRNQ14191 1432 aaPredicted RBP eCLIP33.87■■■■□ 3.01
VPS28-209ENST00000528142 CADPSQ9ULU8 1353 aa33.84■■■■□ 3.01
VPS28-209ENST00000528142 NESP48681 1621 aa33.77■■■■□ 3
VPS28-209ENST00000528142 SYNJ1O43426 1573 aa33.7■■■□□ 2.99
VPS28-209ENST00000528142 PRDM2Q13029 1718 aa33.67■■■□□ 2.98
VPS28-209ENST00000528142 LAMC3Q9Y6N6 1575 aa33.6■■■□□ 2.97
VPS28-209ENST00000528142 SOGA1O94964 1423 aa33.6■■■□□ 2.97
VPS28-209ENST00000528142 EEA1Q15075 1411 aa33.53■■■□□ 2.96
VPS28-209ENST00000528142 TOP2BQ02880 1626 aa33.52■■■□□ 2.96
VPS28-209ENST00000528142 FANCD2Q9BXW9 1451 aa33.47■■■□□ 2.95
VPS28-209ENST00000528142 RUSC2Q8N2Y8 1516 aa33.46■■■□□ 2.95
VPS28-209ENST00000528142 BIVM-ERCC5R4GMW8 1640 aa33.45■■■□□ 2.95
VPS28-209ENST00000528142 CUX1P39880 1505 aa33.39■■■□□ 2.94
VPS28-209ENST00000528142 CSRNP3Q8WYN3 585 aa33.38■■■□□ 2.93
VPS28-209ENST00000528142 EHMT2Q96KQ7 1210 aa33.38■■■□□ 2.93
VPS28-209ENST00000528142 KIF21AQ7Z4S6 1674 aa33.31■■■□□ 2.92
VPS28-209ENST00000528142 PDS5BQ9NTI5 1447 aa33.31■■■□□ 2.92
VPS28-209ENST00000528142 CEP164Q9UPV0 1460 aa33.26■■■□□ 2.91
VPS28-209ENST00000528142 URB2Q14146 1524 aaKnown RBP33.14■■■□□ 2.9
VPS28-209ENST00000528142 DNMBPQ6XZF7 1577 aa33.1■■■□□ 2.89
VPS28-209ENST00000528142 TOPBP1Q92547 1522 aa33.1■■■□□ 2.89
VPS28-209ENST00000528142 TNIKQ9UKE5 1360 aa33.09■■■□□ 2.89
VPS28-209ENST00000528142 GOLGA3Q08378 1498 aa33.08■■■□□ 2.89
VPS28-209ENST00000528142 KIF21BO75037 1637 aa33.05■■■□□ 2.88
VPS28-209ENST00000528142 FGD5Q6ZNL6 1462 aa33.01■■■□□ 2.87
VPS28-209ENST00000528142 KIF27Q86VH2 1401 aa32.97■■■□□ 2.87
VPS28-209ENST00000528142 MRC2Q9UBG0 1479 aa32.96■■■□□ 2.87
VPS28-209ENST00000528142 ERCC6Q03468 1493 aa32.95■■■□□ 2.87
VPS28-209ENST00000528142 UBTFP17480 764 aaKnown RBP32.95■■■□□ 2.86
VPS28-209ENST00000528142 CEP162Q5TB80 1403 aa32.92■■■□□ 2.86
VPS28-209ENST00000528142 POLA1P09884 1462 aaPredicted RBP32.91■■■□□ 2.86
VPS28-209ENST00000528142 RAPGEF2Q9Y4G8 1499 aa32.88■■■□□ 2.85
VPS28-209ENST00000528142 PRXQ9BXM0 1461 aa32.87■■■□□ 2.85
VPS28-209ENST00000528142 THOC2Q8NI27 1593 aaKnown RBP32.85■■■□□ 2.85
VPS28-209ENST00000528142 RAD54L2Q9Y4B4 1467 aa32.84■■■□□ 2.85
VPS28-209ENST00000528142 WDR62O43379 1518 aa32.83■■■□□ 2.85
VPS28-209ENST00000528142 CUX2O14529 1486 aa32.82■■■□□ 2.84
VPS28-209ENST00000528142 ERICH3Q5RHP9 1530 aa32.79■■■□□ 2.84
VPS28-209ENST00000528142 PCGF6Q9BYE7 350 aa32.77■■■□□ 2.84
VPS28-209ENST00000528142 IGF1RP08069 1367 aa32.71■■■□□ 2.83
VPS28-209ENST00000528142 ABCA10Q8WWZ4 1543 aa32.69■■■□□ 2.82
VPS28-209ENST00000528142 TRIM26Q12899 539 aaPredicted RBP32.67■■■□□ 2.82
VPS28-209ENST00000528142 WDR97A6NE52 1622 aa32.66■■■□□ 2.82
VPS28-209ENST00000528142 TARBP1Q13395 1621 aaKnown RBP32.66■■■□□ 2.82
VPS28-209ENST00000528142 CLIP1P30622 1438 aa32.59■■■□□ 2.81
VPS28-209ENST00000528142 TDRD9Q8NDG6 1382 aaKnown RBP32.53■■■□□ 2.8
VPS28-209ENST00000528142 CARMIL1Q5VZK9 1371 aa32.52■■■□□ 2.8
VPS28-209ENST00000528142 IFT140Q96RY7 1462 aa32.48■■■□□ 2.79
VPS28-209ENST00000528142 ABCA5Q8WWZ7 1642 aa32.48■■■□□ 2.79
VPS28-209ENST00000528142 ZNF608Q9ULD9 1512 aaPredicted RBP32.44■■■□□ 2.78
VPS28-209ENST00000528142 AQRO60306 1485 aaKnown RBP eCLIP32.39■■■□□ 2.787e-10■■■■□ 24.3
VPS28-209ENST00000528142 GAPVD1Q14C86 1478 aa32.39■■■□□ 2.78
VPS28-209ENST00000528142 PPARGC1BQ86YN6 1023 aaKnown RBP32.37■■■□□ 2.77
VPS28-209ENST00000528142 VPS8Q8N3P4 1428 aa32.35■■■□□ 2.77
VPS28-209ENST00000528142 RANGAP1P46060 587 aaPredicted RBP32.33■■■□□ 2.77
VPS28-209ENST00000528142 CUL7Q14999 1698 aa32.29■■■□□ 2.76
VPS28-209ENST00000528142 EIF4G3O43432 1585 aaKnown RBP32.26■■■□□ 2.75
VPS28-209ENST00000528142 PBRM1Q86U86 1689 aa32.26■■■□□ 2.75
VPS28-209ENST00000528142 ARAP1Q96P48 1450 aa32.24■■■□□ 2.75
VPS28-209ENST00000528142 ARHGAP35Q9NRY4 1499 aa32.18■■■□□ 2.74
VPS28-209ENST00000528142 GRIN2BQ13224 1484 aa32.18■■■□□ 2.74
VPS28-209ENST00000528142 HRCP23327 699 aa32.1■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms