RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 NISCHQ9Y2I1 1504 aa20.1■□□□□ 0.81
PTPN1-201ENST00000371621 PELP1Q8IZL8 1130 aaKnown RBP19.59■□□□□ 0.73
PTPN1-201ENST00000371621 PCGF6Q9BYE7 350 aa19.43■□□□□ 0.7
PTPN1-201ENST00000371621 SUPT5HO00267 1087 aaKnown RBP19.28■□□□□ 0.68
PTPN1-201ENST00000371621 PPARGC1BQ86YN6 1023 aaKnown RBP19.18■□□□□ 0.66
PTPN1-201ENST00000371621 HRCP23327 699 aa19.14■□□□□ 0.65
PTPN1-201ENST00000371621 MYT1Q01538 1121 aa19.07■□□□□ 0.64
PTPN1-201ENST00000371621 SHROOM4Q9ULL8 1493 aa18.77■□□□□ 0.6
PTPN1-201ENST00000371621 EHMT2Q96KQ7 1210 aa18.68■□□□□ 0.58
PTPN1-201ENST00000371621 DCAF8L2P0C7V8 631 aa18.63■□□□□ 0.57
PTPN1-201ENST00000371621 CENPBP07199 599 aaPredicted RBP18.56■□□□□ 0.56
PTPN1-201ENST00000371621 YTHDC1Q96MU7 727 aaKnown RBP18.48■□□□□ 0.55
PTPN1-201ENST00000371621 SCAF1Q9H7N4 1312 aaKnown RBP18.34■□□□□ 0.53
PTPN1-201ENST00000371621 ZEB1P37275 1124 aaPredicted RBP18.31■□□□□ 0.52
PTPN1-201ENST00000371621 GTF3C3Q9Y5Q9 886 aa18.3■□□□□ 0.52
PTPN1-201ENST00000371621 TTBK1Q5TCY1 1321 aaPredicted RBP18.2■□□□□ 0.5
PTPN1-201ENST00000371621 CCER1Q8TC90 406 aaPredicted RBP18.16■□□□□ 0.5
PTPN1-201ENST00000371621 FAM9AQ8IZU1 332 aaPredicted RBP18.14■□□□□ 0.5
PTPN1-201ENST00000371621 TRIM26Q12899 539 aaPredicted RBP18.13■□□□□ 0.49
PTPN1-201ENST00000371621 LOC105371045A0A1W2PR82 267 aa18.11■□□□□ 0.49
PTPN1-201ENST00000371621 ACIN1Q9UKV3 1341 aaKnown RBP18.02■□□□□ 0.48
PTPN1-201ENST00000371621 ERICH6Q7L0X2 663 aa17.95■□□□□ 0.46
PTPN1-201ENST00000371621 NEUROD1Q13562 356 aa17.95■□□□□ 0.46
PTPN1-201ENST00000371621 CHIC1Q5VXU3 224 aa17.89■□□□□ 0.45
PTPN1-201ENST00000371621 DIEXFQ68CQ4 756 aaKnown RBP17.88■□□□□ 0.45
PTPN1-201ENST00000371621 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.79■□□□□ 0.44
PTPN1-201ENST00000371621 BCL11AQ9H165 835 aa17.63■□□□□ 0.41
PTPN1-201ENST00000371621 BCANQ96GW7 911 aa17.58■□□□□ 0.41
PTPN1-201ENST00000371621 NEFLP07196 543 aa17.48■□□□□ 0.39
PTPN1-201ENST00000371621 TRIM41Q8WV44 630 aa17.48■□□□□ 0.39
PTPN1-201ENST00000371621 ANP32EQ9BTT0 268 aa17.31■□□□□ 0.36
PTPN1-201ENST00000371621 RANGAP1P46060 587 aaPredicted RBP17.21■□□□□ 0.35
PTPN1-201ENST00000371621 MYO15BQ96JP2 1530 aa17.21■□□□□ 0.35
PTPN1-201ENST00000371621 ZNF316A6NFI3 1004 aaPredicted RBP17.19■□□□□ 0.34
PTPN1-201ENST00000371621 APLP2Q06481 763 aa17.19■□□□□ 0.34
PTPN1-201ENST00000371621 HNRNPUL2Q1KMD3 747 aaKnown RBP17.19■□□□□ 0.34
PTPN1-201ENST00000371621 CSRNP3Q8WYN3 585 aa17.16■□□□□ 0.34
PTPN1-201ENST00000371621 EIF5BO60841 1220 aaKnown RBP17.12■□□□□ 0.33
PTPN1-201ENST00000371621 MIER1Q8N108 512 aa17.11■□□□□ 0.33
PTPN1-201ENST00000371621 RTL5Q5HYW3 569 aaPredicted RBP17.05■□□□□ 0.32
PTPN1-201ENST00000371621 FKBP8Q14318 412 aa17.01■□□□□ 0.31
PTPN1-201ENST00000371621 UBTFP17480 764 aaKnown RBP16.99■□□□□ 0.31
PTPN1-201ENST00000371621 ITGAEP38570 1179 aa16.98■□□□□ 0.31
PTPN1-201ENST00000371621 DCAF1Q9Y4B6 1507 aa16.98■□□□□ 0.31
PTPN1-201ENST00000371621 PRKCSHP14314 528 aaPredicted RBP16.97■□□□□ 0.31
PTPN1-201ENST00000371621 NBR1Q14596 966 aa16.96■□□□□ 0.31
PTPN1-201ENST00000371621 RTN4Q9NQC3 1192 aaKnown RBP16.89■□□□□ 0.29
PTPN1-201ENST00000371621 CDK11AQ9UQ88 783 aaPredicted RBP16.87■□□□□ 0.29
PTPN1-201ENST00000371621 SUPT16HQ9Y5B9 1047 aaKnown RBP16.86■□□□□ 0.29
PTPN1-201ENST00000371621 ZCCHC6Q5VYS8 1495 aaKnown RBP16.86■□□□□ 0.29
PTPN1-201ENST00000371621 CCDC180Q9P1Z9 1646 aa16.83■□□□□ 0.28
PTPN1-201ENST00000371621 TSHZ2Q9NRE2 1034 aa16.81■□□□□ 0.28
PTPN1-201ENST00000371621 CNGB1Q14028 1251 aaPredicted RBP16.8■□□□□ 0.28
PTPN1-201ENST00000371621 CCDC136Q96JN2 1154 aa16.75■□□□□ 0.27
PTPN1-201ENST00000371621 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.7■□□□□ 0.26
PTPN1-201ENST00000371621 IRX6P78412 446 aaPredicted RBP16.69■□□□□ 0.26
PTPN1-201ENST00000371621 TRIM52Q96A61 297 aa16.69■□□□□ 0.26
PTPN1-201ENST00000371621 DAXXQ9UER7 740 aaPredicted RBP16.67■□□□□ 0.26
PTPN1-201ENST00000371621 RBM19Q9Y4C8 960 aaKnown RBP16.67■□□□□ 0.26
PTPN1-201ENST00000371621 CLSPNQ9HAW4 1339 aa16.65■□□□□ 0.26
PTPN1-201ENST00000371621 DEKP35659 375 aaKnown RBP16.65■□□□□ 0.26
PTPN1-201ENST00000371621 NPM2Q86SE8 214 aaKnown RBP16.61■□□□□ 0.25
PTPN1-201ENST00000371621 ANO8Q9HCE9 1232 aaPredicted RBP16.6■□□□□ 0.25
PTPN1-201ENST00000371621 ABCC9O60706 1549 aa16.53■□□□□ 0.24
PTPN1-201ENST00000371621 MYT1LQ9UL68 1186 aa16.53■□□□□ 0.24
PTPN1-201ENST00000371621 ANP32AP39687 249 aaKnown RBP16.51■□□□□ 0.23
PTPN1-201ENST00000371621 DDX10Q13206 875 aaKnown RBP16.5■□□□□ 0.23
PTPN1-201ENST00000371621 ATP1B4Q9UN42 357 aaPredicted RBP16.49■□□□□ 0.23
PTPN1-201ENST00000371621 ANP32CO43423 234 aa16.47■□□□□ 0.23
PTPN1-201ENST00000371621 POLR3GLQ9BT43 218 aa16.46■□□□□ 0.23
PTPN1-201ENST00000371621 ZBTB47Q9UFB7 747 aaPredicted RBP16.42■□□□□ 0.22
PTPN1-201ENST00000371621 HNRNPUQ00839 825 aaKnown RBP eCLIP16.4■□□□□ 0.22
PTPN1-201ENST00000371621 HIRIP3Q9BW71 556 aaPredicted RBP16.38■□□□□ 0.21
PTPN1-201ENST00000371621 GLIPR1L2Q4G1C9 344 aa16.38■□□□□ 0.21
PTPN1-201ENST00000371621 SALL2Q9Y467 1007 aaPredicted RBP16.35■□□□□ 0.21
PTPN1-201ENST00000371621 ARXQ96QS3 562 aa16.35■□□□□ 0.21
PTPN1-201ENST00000371621 SCRIBQ14160 1630 aa16.28■□□□□ 0.2
PTPN1-201ENST00000371621 LAS1LQ9Y4W2 734 aaKnown RBP16.28■□□□□ 0.2
PTPN1-201ENST00000371621 NOP58Q9Y2X3 529 aaKnown RBP16.26■□□□□ 0.19
PTPN1-201ENST00000371621 KCNH8Q96L42 1107 aa16.25■□□□□ 0.19
PTPN1-201ENST00000371621 NEFMP07197 916 aa16.22■□□□□ 0.19
PTPN1-201ENST00000371621 SENP3-EIF4A1A0A087X0R7 540 aa16.22■□□□□ 0.19
PTPN1-201ENST00000371621 B4GALNT3Q6L9W6 998 aa16.2■□□□□ 0.18
PTPN1-201ENST00000371621 FAM9BQ8IZU0 186 aa16.19■□□□□ 0.18
PTPN1-201ENST00000371621 TIMELESSQ9UNS1 1208 aa16.14■□□□□ 0.17
PTPN1-201ENST00000371621 IL27Q8NEV9 243 aa16.13■□□□□ 0.17
PTPN1-201ENST00000371621 ARID4BQ4LE39 1312 aaPredicted RBP16.08■□□□□ 0.17
PTPN1-201ENST00000371621 FAM50AQ14320 339 aaKnown RBP16.08■□□□□ 0.16
PTPN1-201ENST00000371621 MSH5O43196 834 aa16.04■□□□□ 0.16
PTPN1-201ENST00000371621 VSIG10Q8N0Z9 540 aa16.03■□□□□ 0.16
PTPN1-201ENST00000371621 PABPN1Q86U42 306 aaKnown RBP eCLIP16.03■□□□□ 0.16
PTPN1-201ENST00000371621 ERICH6BQ5W0A0 696 aa16.03■□□□□ 0.16
PTPN1-201ENST00000371621 NAP1L5Q96NT1 182 aaPredicted RBP16.02■□□□□ 0.15
PTPN1-201ENST00000371621 PPP4R2Q9NY27 417 aa15.98■□□□□ 0.15
PTPN1-201ENST00000371621 RSF1Q96T23 1441 aaPredicted RBP15.97■□□□□ 0.15
PTPN1-201ENST00000371621 PKNOX2Q96KN3 472 aa15.97■□□□□ 0.15
PTPN1-201ENST00000371621 FANCIQ9NVI1 1328 aa15.91■□□□□ 0.14
PTPN1-201ENST00000371621 MRS2Q9HD23 443 aa15.91■□□□□ 0.14
PTPN1-201ENST00000371621 CECR2Q9BXF3 1484 aa15.88■□□□□ 0.13
PTPN1-201ENST00000371621 PAK3O75914 559 aaPredicted RBP15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms