RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 NISCHQ9Y2I1 1504 aa44.58■■■■■ 4.73
VPS28-205ENST00000526204 CCDC180Q9P1Z9 1646 aa38.09■■■■□ 3.69
VPS28-205ENST00000526204 ZCCHC6Q5VYS8 1495 aaKnown RBP37.7■■■■□ 3.62
VPS28-205ENST00000526204 SHROOM4Q9ULL8 1493 aa37.53■■■■□ 3.6
VPS28-205ENST00000526204 SUPT5HO00267 1087 aaKnown RBP36.8■■■■□ 3.48
VPS28-205ENST00000526204 DCAF1Q9Y4B6 1507 aa36.78■■■■□ 3.48
VPS28-205ENST00000526204 DCAF8L2P0C7V8 631 aa36.69■■■■□ 3.46
VPS28-205ENST00000526204 CHIC1Q5VXU3 224 aa35.85■■■■□ 3.33
VPS28-205ENST00000526204 MYO15BQ96JP2 1530 aa35.83■■■■□ 3.33
VPS28-205ENST00000526204 ABCC9O60706 1549 aa35.51■■■■□ 3.28
VPS28-205ENST00000526204 SCRIBQ14160 1630 aa35.4■■■■□ 3.26
VPS28-205ENST00000526204 NACADO15069 1562 aa35.26■■■■□ 3.23
VPS28-205ENST00000526204 RSF1Q96T23 1441 aaPredicted RBP35.17■■■■□ 3.22
VPS28-205ENST00000526204 RB1CC1Q8TDY2 1594 aa34.82■■■■□ 3.16
VPS28-205ENST00000526204 CECR2Q9BXF3 1484 aa34.62■■■■□ 3.13
VPS28-205ENST00000526204 LOC105371045A0A1W2PR82 267 aa34.61■■■■□ 3.13
VPS28-205ENST00000526204 MROH2BQ7Z745 1585 aa34.54■■■■□ 3.12
VPS28-205ENST00000526204 HRCP23327 699 aa34.49■■■■□ 3.11
VPS28-205ENST00000526204 TRIM41Q8WV44 630 aa34.45■■■■□ 3.11
VPS28-205ENST00000526204 PCGF6Q9BYE7 350 aa34.45■■■■□ 3.11
VPS28-205ENST00000526204 WIZO95785 1651 aa34.3■■■■□ 3.08
VPS28-205ENST00000526204 BAZ1AQ9NRL2 1556 aaPredicted RBP34.3■■■■□ 3.08
VPS28-205ENST00000526204 TRIM26Q12899 539 aaPredicted RBP34.04■■■■□ 3.04
VPS28-205ENST00000526204 SMARCA4P51532 1647 aa33.96■■■■□ 3.03
VPS28-205ENST00000526204 UNC13AQ9UPW8 1703 aa33.94■■■■□ 3.02
VPS28-205ENST00000526204 FAM9AQ8IZU1 332 aaPredicted RBP33.94■■■■□ 3.02
VPS28-205ENST00000526204 TOP2AP11388 1531 aaKnown RBP33.93■■■■□ 3.02
VPS28-205ENST00000526204 EIF4G1Q04637 1599 aaKnown RBP33.88■■■■□ 3.01
VPS28-205ENST00000526204 CCDC88BA6NC98 1476 aa33.7■■■□□ 2.99
VPS28-205ENST00000526204 SMARCA2P51531 1590 aa33.67■■■□□ 2.98
VPS28-205ENST00000526204 BICRAQ9NZM4 1560 aa33.61■■■□□ 2.97
VPS28-205ENST00000526204 PPARGC1BQ86YN6 1023 aaKnown RBP33.52■■■□□ 2.96
VPS28-205ENST00000526204 PABPN1Q86U42 306 aaKnown RBP eCLIP33.49■■■□□ 2.956e-9■□□□□ 9.8
VPS28-205ENST00000526204 EHMT2Q96KQ7 1210 aa33.47■■■□□ 2.95
VPS28-205ENST00000526204 PEG3Q9GZU2 1588 aa33.44■■■□□ 2.94
VPS28-205ENST00000526204 ABCC8Q09428 1581 aa33.43■■■□□ 2.94
VPS28-205ENST00000526204 ZEB1P37275 1124 aaPredicted RBP33.37■■■□□ 2.93
VPS28-205ENST00000526204 EEA1Q15075 1411 aa33.24■■■□□ 2.91
VPS28-205ENST00000526204 ATAD2BQ9ULI0 1458 aa33.14■■■□□ 2.9
VPS28-205ENST00000526204 SOGA1O94964 1423 aa33.13■■■□□ 2.89
VPS28-205ENST00000526204 WRNQ14191 1432 aaPredicted RBP eCLIP33.06■■■□□ 2.88
VPS28-205ENST00000526204 CSRNP3Q8WYN3 585 aa33.05■■■□□ 2.88
VPS28-205ENST00000526204 TNIKQ9UKE5 1360 aa33.05■■■□□ 2.88
VPS28-205ENST00000526204 BAZ1BQ9UIG0 1483 aaKnown RBP33.03■■■□□ 2.88
VPS28-205ENST00000526204 CEP162Q5TB80 1403 aa32.98■■■□□ 2.87
VPS28-205ENST00000526204 RUSC2Q8N2Y8 1516 aa32.91■■■□□ 2.86
VPS28-205ENST00000526204 GOLGA3Q08378 1498 aa32.87■■■□□ 2.85
VPS28-205ENST00000526204 SYNJ1O43426 1573 aa32.81■■■□□ 2.84
VPS28-205ENST00000526204 UBTFP17480 764 aaKnown RBP32.81■■■□□ 2.84
VPS28-205ENST00000526204 CEP164Q9UPV0 1460 aa32.73■■■□□ 2.83
VPS28-205ENST00000526204 KIF21BO75037 1637 aa32.68■■■□□ 2.82
VPS28-205ENST00000526204 NCAPD3P42695 1498 aa32.6■■■□□ 2.81
VPS28-205ENST00000526204 HMGXB3Q12766 1538 aa32.6■■■□□ 2.81
VPS28-205ENST00000526204 TOP2BQ02880 1626 aa32.55■■■□□ 2.8
VPS28-205ENST00000526204 CCER1Q8TC90 406 aaPredicted RBP32.53■■■□□ 2.8
VPS28-205ENST00000526204 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.51■■■□□ 2.79
VPS28-205ENST00000526204 CLIP1P30622 1438 aa32.44■■■□□ 2.78
VPS28-205ENST00000526204 BIVM-ERCC5R4GMW8 1640 aa32.44■■■□□ 2.78
VPS28-205ENST00000526204 TTBK1Q5TCY1 1321 aaPredicted RBP32.4■■■□□ 2.78
VPS28-205ENST00000526204 RAPGEF2Q9Y4G8 1499 aa32.36■■■□□ 2.77
VPS28-205ENST00000526204 VPS8Q8N3P4 1428 aa32.32■■■□□ 2.76
VPS28-205ENST00000526204 CFTRP13569 1480 aa32.26■■■□□ 2.75
VPS28-205ENST00000526204 ERICH3Q5RHP9 1530 aa32.23■■■□□ 2.75
VPS28-205ENST00000526204 PRXQ9BXM0 1461 aa32.2■■■□□ 2.74
VPS28-205ENST00000526204 CUX1P39880 1505 aa32.19■■■□□ 2.74
VPS28-205ENST00000526204 APLP2Q06481 763 aa32.15■■■□□ 2.74
VPS28-205ENST00000526204 KIF27Q86VH2 1401 aa32.1■■■□□ 2.73
VPS28-205ENST00000526204 PRDM2Q13029 1718 aa31.97■■■□□ 2.71
VPS28-205ENST00000526204 RANGAP1P46060 587 aaPredicted RBP31.95■■■□□ 2.71
VPS28-205ENST00000526204 CC2D2AQ9P2K1 1620 aa31.94■■■□□ 2.7
VPS28-205ENST00000526204 CADPSQ9ULU8 1353 aa31.92■■■□□ 2.7
VPS28-205ENST00000526204 ARAP1Q96P48 1450 aa31.9■■■□□ 2.7
VPS28-205ENST00000526204 HNRNPUL2Q1KMD3 747 aaKnown RBP31.89■■■□□ 2.7
VPS28-205ENST00000526204 DIEXFQ68CQ4 756 aaKnown RBP31.81■■■□□ 2.68
VPS28-205ENST00000526204 CUX2O14529 1486 aa31.73■■■□□ 2.67
VPS28-205ENST00000526204 IGF1RP08069 1367 aa31.72■■■□□ 2.67
VPS28-205ENST00000526204 ZNF316A6NFI3 1004 aaPredicted RBP31.68■■■□□ 2.66
VPS28-205ENST00000526204 ARHGAP35Q9NRY4 1499 aa31.67■■■□□ 2.66
VPS28-205ENST00000526204 FGD5Q6ZNL6 1462 aa31.65■■■□□ 2.66
VPS28-205ENST00000526204 KANK4Q5T7N3 995 aaPredicted RBP31.61■■■□□ 2.65
VPS28-205ENST00000526204 CARMIL1Q5VZK9 1371 aa31.58■■■□□ 2.65
VPS28-205ENST00000526204 RRBP1Q9P2E9 1410 aaKnown RBP31.56■■■□□ 2.64
VPS28-205ENST00000526204 FANCD2Q9BXW9 1451 aa31.56■■■□□ 2.64
VPS28-205ENST00000526204 CLSPNQ9HAW4 1339 aa31.56■■■□□ 2.64
VPS28-205ENST00000526204 SCAF1Q9H7N4 1312 aaKnown RBP31.52■■■□□ 2.64
VPS28-205ENST00000526204 MAP3K1Q13233 1512 aa31.45■■■□□ 2.63
VPS28-205ENST00000526204 DNMBPQ6XZF7 1577 aa31.44■■■□□ 2.62
VPS28-205ENST00000526204 ACIN1Q9UKV3 1341 aaKnown RBP31.43■■■□□ 2.62
VPS28-205ENST00000526204 CCNB3Q8WWL7 1395 aa31.4■■■□□ 2.62
VPS28-205ENST00000526204 CENPBP07199 599 aaPredicted RBP31.39■■■□□ 2.62
VPS28-205ENST00000526204 DHX57Q6P158 1386 aaKnown RBP31.39■■■□□ 2.62
VPS28-205ENST00000526204 ABCA10Q8WWZ4 1543 aa31.37■■■□□ 2.61
VPS28-205ENST00000526204 TOPBP1Q92547 1522 aa31.34■■■□□ 2.61
VPS28-205ENST00000526204 TIAM1Q13009 1591 aa31.32■■■□□ 2.6
VPS28-205ENST00000526204 FHAD1B1AJZ9 1412 aa31.32■■■□□ 2.6
VPS28-205ENST00000526204 POLA1P09884 1462 aaPredicted RBP31.31■■■□□ 2.6
VPS28-205ENST00000526204 NEUROD1Q13562 356 aa31.3■■■□□ 2.6
VPS28-205ENST00000526204 RAD54L2Q9Y4B4 1467 aa31.26■■■□□ 2.6
VPS28-205ENST00000526204 DNAJC5BQ9UF47 199 aa31.24■■■□□ 2.59
VPS28-205ENST00000526204 NESP48681 1621 aa31.23■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms