RNA–Protein interactions for RNA: ENST00000494618.1

NCL-210, Transcript of nucleolin, humanhuman

TSL 2

Gene NCL, Length 910 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCL-210ENST00000494618 AEBP2Q6ZN18 517 aaPredicted RBP29.46■■■□□ 2.31
NCL-210ENST00000494618 CHIC1Q5VXU3 224 aa28.78■■■□□ 2.2
NCL-210ENST00000494618 PHF23Q9BUL5 403 aaPredicted RBP25.23■■□□□ 1.63
NCL-210ENST00000494618 SENP3Q9H4L4 574 aaPredicted RBP25.13■■□□□ 1.61
NCL-210ENST00000494618 PLPPR3Q6T4P5 718 aa23.39■■□□□ 1.33
NCL-210ENST00000494618 FOXD1Q16676 465 aa23.26■■□□□ 1.31
NCL-210ENST00000494618 ADRA2BP18089 450 aa22.3■■□□□ 1.16
NCL-210ENST00000494618 PPP6R1Q9UPN7 881 aa22.29■■□□□ 1.16
NCL-210ENST00000494618 PIAS4Q8N2W9 510 aaPredicted RBP21.97■■□□□ 1.11
NCL-210ENST00000494618 MSH5O43196 834 aa21.57■■□□□ 1.04
NCL-210ENST00000494618 PPP4R3CPQ6ZMV5 832 aa20.57■□□□□ 0.88
NCL-210ENST00000494618 SCAF1Q9H7N4 1312 aaKnown RBP20.54■□□□□ 0.88
NCL-210ENST00000494618 MAPK8IP2Q13387 824 aaPredicted RBP20.24■□□□□ 0.83
NCL-210ENST00000494618 NCBP3Q53F19 620 aaKnown RBP20.09■□□□□ 0.81
NCL-210ENST00000494618 CNKSR2Q8WXI2 1034 aa20.04■□□□□ 0.8
NCL-210ENST00000494618 DMRT2Q9Y5R5 561 aa20.01■□□□□ 0.79
NCL-210ENST00000494618 KCNA4P22459 653 aa19.96■□□□□ 0.79
NCL-210ENST00000494618 POTEDQ86YR6 584 aa19.7■□□□□ 0.74
NCL-210ENST00000494618 NPM3O75607 178 aaKnown RBP19.69■□□□□ 0.74
NCL-210ENST00000494618 RNF216Q9NWF9 866 aaPredicted RBP19.65■□□□□ 0.74
NCL-210ENST00000494618 HOXD11P31277 338 aaPredicted RBP19.57■□□□□ 0.72
NCL-210ENST00000494618 DCAF8L1A6NGE4 600 aa19.21■□□□□ 0.67
NCL-210ENST00000494618 DNAJC5BQ9UF47 199 aa19.14■□□□□ 0.65
NCL-210ENST00000494618 SLC4A1APQ9BWU0 796 aaKnown RBP19.05■□□□□ 0.64
NCL-210ENST00000494618 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.71■□□□□ 0.596e-13■■■■□ 24.9
NCL-210ENST00000494618 SLC4A2P04920 1241 aa18.57■□□□□ 0.56
NCL-210ENST00000494618 FOXD4L1Q9NU39 408 aa18.44■□□□□ 0.54
NCL-210ENST00000494618 RNF39Q9H2S5 420 aa18.42■□□□□ 0.54
NCL-210ENST00000494618 EHMT2Q96KQ7 1210 aa18.39■□□□□ 0.53
NCL-210ENST00000494618 U3KPZ7 1027 aaPredicted RBP18.31■□□□□ 0.52
NCL-210ENST00000494618 ZBTB22O15209 634 aa18.3■□□□□ 0.52
NCL-210ENST00000494618 MYCNP04198 464 aaPredicted RBP18.25■□□□□ 0.51
NCL-210ENST00000494618 C1QBPQ07021 282 aaKnown RBP18.25■□□□□ 0.51
NCL-210ENST00000494618 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.19■□□□□ 0.5
NCL-210ENST00000494618 HNRNPUL2Q1KMD3 747 aaKnown RBP18.19■□□□□ 0.5
NCL-210ENST00000494618 CSRNP3Q8WYN3 585 aa18.19■□□□□ 0.5
NCL-210ENST00000494618 SAMD1Q6SPF0 538 aaPredicted RBP18.09■□□□□ 0.49
NCL-210ENST00000494618 CACNB1Q02641 598 aaPredicted RBP18.05■□□□□ 0.48
NCL-210ENST00000494618 APLP2Q06481 763 aa18.05■□□□□ 0.48
NCL-210ENST00000494618 ATXN8OSP0DMR3 200 aa17.84■□□□□ 0.45
NCL-210ENST00000494618 CAPN15O75808 1086 aa17.83■□□□□ 0.44
NCL-210ENST00000494618 SPINK5Q9NQ38 1064 aaPredicted RBP17.82■□□□□ 0.44
NCL-210ENST00000494618 ZNF219Q9P2Y4 722 aaPredicted RBP17.75■□□□□ 0.43
NCL-210ENST00000494618 TRHP20396 242 aaPredicted RBP17.72■□□□□ 0.43
NCL-210ENST00000494618 ATF5Q9Y2D1 282 aaPredicted RBP17.67■□□□□ 0.42
NCL-210ENST00000494618 DSG3P32926 999 aa17.5■□□□□ 0.39
NCL-210ENST00000494618 ABCB7O75027 752 aa17.43■□□□□ 0.38
NCL-210ENST00000494618 POLA2Q14181 598 aa17.4■□□□□ 0.38
NCL-210ENST00000494618 ZBTB12Q9Y330 459 aaPredicted RBP17.18■□□□□ 0.34
NCL-210ENST00000494618 FBLN2P98095 1184 aa17.07■□□□□ 0.32
NCL-210ENST00000494618 MKRN4PQ13434 485 aaPredicted RBP16.9■□□□□ 0.3
NCL-210ENST00000494618 OSCARQ8IYS5 282 aa16.78■□□□□ 0.28
NCL-210ENST00000494618 RBM42Q9BTD8 480 aaKnown RBP16.77■□□□□ 0.28
NCL-210ENST00000494618 SPDYE2BA6NHP3 402 aa16.67■□□□□ 0.26
NCL-210ENST00000494618 SPDYE6P0CI01 402 aa16.67■□□□□ 0.26
NCL-210ENST00000494618 SPDYE2Q495Y8 402 aa16.67■□□□□ 0.26
NCL-210ENST00000494618 ZNF692Q9BU19 519 aaPredicted RBP16.6■□□□□ 0.25
NCL-210ENST00000494618 SPDYE4A6NLX3 237 aa16.57■□□□□ 0.24
NCL-210ENST00000494618 AKT1S1Q96B36 256 aa16.51■□□□□ 0.23
NCL-210ENST00000494618 FKBP8Q14318 412 aa16.5■□□□□ 0.23
NCL-210ENST00000494618 SSUH2Q9Y2M2 353 aa16.47■□□□□ 0.23
NCL-210ENST00000494618 PABPN1Q86U42 306 aaKnown RBP eCLIP16.35■□□□□ 0.21
NCL-210ENST00000494618 REM2Q8IYK8 340 aaPredicted RBP16.32■□□□□ 0.2
NCL-210ENST00000494618 PROM2Q8N271 834 aa16.22■□□□□ 0.19
NCL-210ENST00000494618 SPDYE1Q8NFV5 336 aaPredicted RBP16.21■□□□□ 0.19
NCL-210ENST00000494618 STAG3Q9UJ98 1225 aa16.14■□□□□ 0.17
NCL-210ENST00000494618 CLEC11AQ9Y240 323 aa16.14■□□□□ 0.17
NCL-210ENST00000494618 PITPNM1O00562 1244 aa16.11■□□□□ 0.17
NCL-210ENST00000494618 CHRDL2Q6WN34 429 aa16.04■□□□□ 0.16
NCL-210ENST00000494618 FBXO3Q9UK99 471 aa16.02■□□□□ 0.16
NCL-210ENST00000494618 PRR29P0C7W0 189 aa16■□□□□ 0.15
NCL-210ENST00000494618 FXR2P51116 673 aaKnown RBP eCLIP15.83■□□□□ 0.121e-10■■■□□ 18.5
NCL-210ENST00000494618 PIP4P2Q8N4L2 257 aa15.8■□□□□ 0.12
NCL-210ENST00000494618 PLEKHG5O94827 1062 aa15.77■□□□□ 0.12
NCL-210ENST00000494618 MIER1Q8N108 512 aa15.76■□□□□ 0.11
NCL-210ENST00000494618 PRKAR2AP13861 404 aaKnown RBP15.74■□□□□ 0.11
NCL-210ENST00000494618 PLCD3Q8N3E9 789 aa15.73■□□□□ 0.11
NCL-210ENST00000494618 VASPP50552 380 aaPredicted RBP15.71■□□□□ 0.11
NCL-210ENST00000494618 CHADLQ6NUI6 762 aa15.69■□□□□ 0.1
NCL-210ENST00000494618 CREBZFQ9NS37 354 aa15.69■□□□□ 0.1
NCL-210ENST00000494618 POTEHQ6S545 545 aa15.62■□□□□ 0.09
NCL-210ENST00000494618 ZBTB47Q9UFB7 747 aaPredicted RBP15.61■□□□□ 0.09
NCL-210ENST00000494618 FARP1Q9Y4F1 1045 aaPredicted RBP15.56■□□□□ 0.08
NCL-210ENST00000494618 NPM1P06748 294 aaKnown RBP eCLIP15.54■□□□□ 0.083e-8■■■□□ 18.3
NCL-210ENST00000494618 KLHL34Q8N239 644 aa15.54■□□□□ 0.08
NCL-210ENST00000494618 MNX1P50219 401 aaPredicted RBP15.49■□□□□ 0.07
NCL-210ENST00000494618 IFNLR1Q8IU57 520 aaPredicted RBP15.47■□□□□ 0.07
NCL-210ENST00000494618 HAX1O00165 279 aa15.37■□□□□ 0.05
NCL-210ENST00000494618 SPOCK2Q92563 424 aa15.36■□□□□ 0.05
NCL-210ENST00000494618 PAK3O75914 559 aaPredicted RBP15.31■□□□□ 0.04
NCL-210ENST00000494618 C19orf67A6NJJ6 358 aa15.29■□□□□ 0.04
NCL-210ENST00000494618 CD44P16070 742 aaKnown RBP15.29■□□□□ 0.04
NCL-210ENST00000494618 NUBP1P53384 320 aa15.28■□□□□ 0.04
NCL-210ENST00000494618 FAM212AQ96EL1 285 aa15.24■□□□□ 0.03
NCL-210ENST00000494618 RASEFQ8IZ41 740 aa15.23■□□□□ 0.03
NCL-210ENST00000494618 TSPYL2Q9H2G4 693 aaPredicted RBP15.22■□□□□ 0.03
NCL-210ENST00000494618 DCAF8Q5TAQ9 597 aa15.21■□□□□ 0.03
NCL-210ENST00000494618 ZRANB1Q9UGI0 708 aa15.2■□□□□ 0.02
NCL-210ENST00000494618 GSE1Q14687 1217 aa15.19■□□□□ 0.02
NCL-210ENST00000494618 CIZ1Q9ULV3 898 aaPredicted RBP15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 269.1 ms