RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 NISCHQ9Y2I1 1504 aa31.7■■■□□ 2.66
VPS28-216ENST00000533806 CCDC180Q9P1Z9 1646 aa28.1■■■□□ 2.09
VPS28-216ENST00000533806 ABCC9O60706 1549 aa27.53■■■□□ 2
VPS28-216ENST00000533806 NACADO15069 1562 aa26.47■■□□□ 1.83
VPS28-216ENST00000533806 RB1CC1Q8TDY2 1594 aa26.47■■□□□ 1.83
VPS28-216ENST00000533806 DCAF8L2P0C7V8 631 aa26.4■■□□□ 1.82
VPS28-216ENST00000533806 ZCCHC6Q5VYS8 1495 aaKnown RBP26.39■■□□□ 1.82
VPS28-216ENST00000533806 MYO15BQ96JP2 1530 aa26.39■■□□□ 1.81
VPS28-216ENST00000533806 DCAF1Q9Y4B6 1507 aa26.25■■□□□ 1.79
VPS28-216ENST00000533806 UNC13AQ9UPW8 1703 aa25.82■■□□□ 1.72
VPS28-216ENST00000533806 PABPN1Q86U42 306 aaKnown RBP eCLIP25.77■■□□□ 1.726e-9■□□□□ 9.8
VPS28-216ENST00000533806 BICRAQ9NZM4 1560 aa25.74■■□□□ 1.71
VPS28-216ENST00000533806 SCRIBQ14160 1630 aa25.62■■□□□ 1.69
VPS28-216ENST00000533806 SHROOM4Q9ULL8 1493 aa25.47■■□□□ 1.67
VPS28-216ENST00000533806 DNAJC5BQ9UF47 199 aa25.42■■□□□ 1.66
VPS28-216ENST00000533806 EIF4G1Q04637 1599 aaKnown RBP25.02■■□□□ 1.6
VPS28-216ENST00000533806 CC2D2AQ9P2K1 1620 aa24.9■■□□□ 1.58
VPS28-216ENST00000533806 CECR2Q9BXF3 1484 aa24.76■■□□□ 1.55
VPS28-216ENST00000533806 SMARCA4P51532 1647 aa24.55■■□□□ 1.52
VPS28-216ENST00000533806 BAZ1AQ9NRL2 1556 aaPredicted RBP24.53■■□□□ 1.52
VPS28-216ENST00000533806 NCAPD3P42695 1498 aa24.5■■□□□ 1.51
VPS28-216ENST00000533806 ATAD2BQ9ULI0 1458 aa24.47■■□□□ 1.51
VPS28-216ENST00000533806 MROH2BQ7Z745 1585 aa24.42■■□□□ 1.5
VPS28-216ENST00000533806 SMARCA2P51531 1590 aa24.38■■□□□ 1.49
VPS28-216ENST00000533806 PEG3Q9GZU2 1588 aa24.37■■□□□ 1.49
VPS28-216ENST00000533806 HMGXB3Q12766 1538 aa24.3■■□□□ 1.48
VPS28-216ENST00000533806 BAZ1BQ9UIG0 1483 aaKnown RBP24.21■■□□□ 1.47
VPS28-216ENST00000533806 RSF1Q96T23 1441 aaPredicted RBP24.18■■□□□ 1.46
VPS28-216ENST00000533806 WIZO95785 1651 aa24.1■■□□□ 1.45
VPS28-216ENST00000533806 TOP2AP11388 1531 aaKnown RBP23.87■■□□□ 1.41
VPS28-216ENST00000533806 NESP48681 1621 aa23.86■■□□□ 1.41
VPS28-216ENST00000533806 LAMC3Q9Y6N6 1575 aa23.76■■□□□ 1.39
VPS28-216ENST00000533806 CADPSQ9ULU8 1353 aa23.76■■□□□ 1.39
VPS28-216ENST00000533806 ERCC6Q03468 1493 aa23.68■■□□□ 1.38
VPS28-216ENST00000533806 PDS5BQ9NTI5 1447 aa23.63■■□□□ 1.37
VPS28-216ENST00000533806 CCDC88BA6NC98 1476 aa23.62■■□□□ 1.37
VPS28-216ENST00000533806 CFTRP13569 1480 aa23.62■■□□□ 1.37
VPS28-216ENST00000533806 CUX2O14529 1486 aa23.51■■□□□ 1.35
VPS28-216ENST00000533806 KIF21AQ7Z4S6 1674 aa23.48■■□□□ 1.35
VPS28-216ENST00000533806 THOC2Q8NI27 1593 aaKnown RBP23.47■■□□□ 1.35
VPS28-216ENST00000533806 SUPT5HO00267 1087 aaKnown RBP23.46■■□□□ 1.35
VPS28-216ENST00000533806 FANCD2Q9BXW9 1451 aa23.44■■□□□ 1.34
VPS28-216ENST00000533806 CEP164Q9UPV0 1460 aa23.38■■□□□ 1.33
VPS28-216ENST00000533806 MRC2Q9UBG0 1479 aa23.37■■□□□ 1.33
VPS28-216ENST00000533806 WDR62O43379 1518 aa23.31■■□□□ 1.32
VPS28-216ENST00000533806 PRDM2Q13029 1718 aa23.26■■□□□ 1.31
VPS28-216ENST00000533806 URB2Q14146 1524 aaKnown RBP23.23■■□□□ 1.31
VPS28-216ENST00000533806 TOPBP1Q92547 1522 aa23.07■■□□□ 1.28
VPS28-216ENST00000533806 ABCC8Q09428 1581 aa23.06■■□□□ 1.28
VPS28-216ENST00000533806 DNMBPQ6XZF7 1577 aa23.01■■□□□ 1.27
VPS28-216ENST00000533806 IFT140Q96RY7 1462 aa22.92■■□□□ 1.26
VPS28-216ENST00000533806 CUX1P39880 1505 aa22.9■■□□□ 1.26
VPS28-216ENST00000533806 POLA1P09884 1462 aaPredicted RBP22.89■■□□□ 1.25
VPS28-216ENST00000533806 DNAJC5Q9H3Z4 198 aa22.87■■□□□ 1.25
VPS28-216ENST00000533806 ZNF608Q9ULD9 1512 aaPredicted RBP22.84■■□□□ 1.25
VPS28-216ENST00000533806 TARBP1Q13395 1621 aaKnown RBP22.82■■□□□ 1.24
VPS28-216ENST00000533806 FGD5Q6ZNL6 1462 aa22.8■■□□□ 1.24
VPS28-216ENST00000533806 SOGA1O94964 1423 aa22.79■■□□□ 1.24
VPS28-216ENST00000533806 RAD54L2Q9Y4B4 1467 aa22.79■■□□□ 1.24
VPS28-216ENST00000533806 WRNQ14191 1432 aaPredicted RBP eCLIP22.74■■□□□ 1.23
VPS28-216ENST00000533806 AQRO60306 1485 aaKnown RBP eCLIP22.72■■□□□ 1.237e-10■■■■□ 24.3
VPS28-216ENST00000533806 TOP2BQ02880 1626 aa22.68■■□□□ 1.22
VPS28-216ENST00000533806 EIF4G3O43432 1585 aaKnown RBP22.68■■□□□ 1.22
VPS28-216ENST00000533806 SYNJ1O43426 1573 aa22.67■■□□□ 1.22
VPS28-216ENST00000533806 TDRD9Q8NDG6 1382 aaKnown RBP22.67■■□□□ 1.22
VPS28-216ENST00000533806 BIVM-ERCC5R4GMW8 1640 aa22.65■■□□□ 1.22
VPS28-216ENST00000533806 WDR97A6NE52 1622 aa22.62■■□□□ 1.21
VPS28-216ENST00000533806 ABCA10Q8WWZ4 1543 aa22.61■■□□□ 1.21
VPS28-216ENST00000533806 OSCARQ8IYS5 282 aa22.56■■□□□ 1.2
VPS28-216ENST00000533806 GRIN2BQ13224 1484 aa22.51■■□□□ 1.19
VPS28-216ENST00000533806 GAPVD1Q14C86 1478 aa22.51■■□□□ 1.19
VPS28-216ENST00000533806 ABCA5Q8WWZ7 1642 aa22.49■■□□□ 1.19
VPS28-216ENST00000533806 SNAPC4Q5SXM2 1469 aa22.47■■□□□ 1.19
VPS28-216ENST00000533806 MAGI1Q96QZ7 1491 aaPredicted RBP22.45■■□□□ 1.18
VPS28-216ENST00000533806 SYNJ2O15056 1496 aa22.37■■□□□ 1.17
VPS28-216ENST00000533806 FBLN2P98095 1184 aa22.37■■□□□ 1.17
VPS28-216ENST00000533806 PBRM1Q86U86 1689 aa22.36■■□□□ 1.17
VPS28-216ENST00000533806 CHD1O14646 1710 aa22.35■■□□□ 1.17
VPS28-216ENST00000533806 CHMP7Q8WUX9 453 aaPredicted RBP22.35■■□□□ 1.17
VPS28-216ENST00000533806 ERICH3Q5RHP9 1530 aa22.32■■□□□ 1.16
VPS28-216ENST00000533806 FHAD1B1AJZ9 1412 aa22.27■■□□□ 1.16
VPS28-216ENST00000533806 IGF1RP08069 1367 aa22.25■■□□□ 1.15
VPS28-216ENST00000533806 ADAMTS12P58397 1594 aa22.25■■□□□ 1.15
VPS28-216ENST00000533806 KIF27Q86VH2 1401 aa22.25■■□□□ 1.15
VPS28-216ENST00000533806 GRIN2AQ12879 1464 aa22.22■■□□□ 1.15
VPS28-216ENST00000533806 CLASP1Q7Z460 1538 aa22.21■■□□□ 1.15
VPS28-216ENST00000533806 TRIM41Q8WV44 630 aa22.17■■□□□ 1.14
VPS28-216ENST00000533806 ARHGEF11O15085 1522 aa22.16■■□□□ 1.14
VPS28-216ENST00000533806 NUP160Q12769 1436 aa22.16■■□□□ 1.14
VPS28-216ENST00000533806 RIMBP3CA6NJZ7 1639 aa22.13■■□□□ 1.13
VPS28-216ENST00000533806 RIMBP3BA6NNM3 1639 aa22.13■■□□□ 1.13
VPS28-216ENST00000533806 RIMBP3Q9UFD9 1639 aa22.13■■□□□ 1.13
VPS28-216ENST00000533806 CEP170Q5SW79 1584 aa22.1■■□□□ 1.13
VPS28-216ENST00000533806 RUSC2Q8N2Y8 1516 aa22.1■■□□□ 1.13
VPS28-216ENST00000533806 CARMIL1Q5VZK9 1371 aa22.06■■□□□ 1.12
VPS28-216ENST00000533806 CUL7Q14999 1698 aa22.06■■□□□ 1.12
VPS28-216ENST00000533806 ARAP1Q96P48 1450 aa22■■□□□ 1.11
VPS28-216ENST00000533806 CHIC1Q5VXU3 224 aa21.97■■□□□ 1.11
VPS28-216ENST00000533806 SHROOM2Q13796 1616 aa21.96■■□□□ 1.11
VPS28-216ENST00000533806 CYB5RLQ6IPT4 315 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms