RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 NISCHQ9Y2I1 1504 aa27.65■■■□□ 2.02
COL18A1-201ENST00000342220 DCAF8L2P0C7V8 631 aa24.57■■□□□ 1.52
COL18A1-201ENST00000342220 CCDC180Q9P1Z9 1646 aa24.31■■□□□ 1.48
COL18A1-201ENST00000342220 SHROOM4Q9ULL8 1493 aa24.05■■□□□ 1.44
COL18A1-201ENST00000342220 ABCC9O60706 1549 aa23.36■■□□□ 1.33
COL18A1-201ENST00000342220 ZCCHC6Q5VYS8 1495 aaKnown RBP23.34■■□□□ 1.33
COL18A1-201ENST00000342220 SUPT5HO00267 1087 aaKnown RBP23.33■■□□□ 1.32
COL18A1-201ENST00000342220 DCAF1Q9Y4B6 1507 aa23.11■■□□□ 1.29
COL18A1-201ENST00000342220 MYO15BQ96JP2 1530 aa22.82■■□□□ 1.24
COL18A1-201ENST00000342220 SCRIBQ14160 1630 aa22.52■■□□□ 1.2
COL18A1-201ENST00000342220 PABPN1Q86U42 306 aaKnown RBP eCLIP22.51■■□□□ 1.191e-12■■■□□ 17.5
COL18A1-201ENST00000342220 NACADO15069 1562 aa22.43■■□□□ 1.18
COL18A1-201ENST00000342220 RB1CC1Q8TDY2 1594 aa22.12■■□□□ 1.13
COL18A1-201ENST00000342220 EHMT2Q96KQ7 1210 aa21.94■■□□□ 1.1
COL18A1-201ENST00000342220 UNC13AQ9UPW8 1703 aa21.93■■□□□ 1.1
COL18A1-201ENST00000342220 CECR2Q9BXF3 1484 aa21.91■■□□□ 1.1
COL18A1-201ENST00000342220 CHIC1Q5VXU3 224 aa21.78■■□□□ 1.08
COL18A1-201ENST00000342220 RSF1Q96T23 1441 aaPredicted RBP21.77■■□□□ 1.08
COL18A1-201ENST00000342220 FAM9AQ8IZU1 332 aaPredicted RBP21.75■■□□□ 1.07
COL18A1-201ENST00000342220 MROH2BQ7Z745 1585 aa21.61■■□□□ 1.05
COL18A1-201ENST00000342220 BICRAQ9NZM4 1560 aa21.58■■□□□ 1.05
COL18A1-201ENST00000342220 TRIM41Q8WV44 630 aa21.55■■□□□ 1.04
COL18A1-201ENST00000342220 LOC105371045A0A1W2PR82 267 aa21.45■■□□□ 1.02
COL18A1-201ENST00000342220 WIZO95785 1651 aa21.4■■□□□ 1.02
COL18A1-201ENST00000342220 BAZ1AQ9NRL2 1556 aaPredicted RBP21.33■■□□□ 1
COL18A1-201ENST00000342220 SMARCA4P51532 1647 aa21.27■■□□□ 1
COL18A1-201ENST00000342220 PEG3Q9GZU2 1588 aa21.2■□□□□ 0.98
COL18A1-201ENST00000342220 RANGAP1P46060 587 aaPredicted RBP21.06■□□□□ 0.96
COL18A1-201ENST00000342220 CCDC88BA6NC98 1476 aa21.05■□□□□ 0.96
COL18A1-201ENST00000342220 BAZ1BQ9UIG0 1483 aaKnown RBP21.03■□□□□ 0.96
COL18A1-201ENST00000342220 TOP2AP11388 1531 aaKnown RBP21.03■□□□□ 0.96
COL18A1-201ENST00000342220 ATAD2BQ9ULI0 1458 aa20.98■□□□□ 0.95
COL18A1-201ENST00000342220 EIF4G1Q04637 1599 aaKnown RBP20.96■□□□□ 0.95
COL18A1-201ENST00000342220 TTBK1Q5TCY1 1321 aaPredicted RBP20.94■□□□□ 0.94
COL18A1-201ENST00000342220 PPARGC1BQ86YN6 1023 aaKnown RBP20.92■□□□□ 0.94
COL18A1-201ENST00000342220 HRCP23327 699 aa20.9■□□□□ 0.94
COL18A1-201ENST00000342220 DNAJC5BQ9UF47 199 aa20.89■□□□□ 0.94
COL18A1-201ENST00000342220 PELP1Q8IZL8 1130 aaKnown RBP20.89■□□□□ 0.93
COL18A1-201ENST00000342220 ABCC8Q09428 1581 aa20.87■□□□□ 0.93
COL18A1-201ENST00000342220 PCGF6Q9BYE7 350 aa20.86■□□□□ 0.93
COL18A1-201ENST00000342220 SMARCA2P51531 1590 aa20.83■□□□□ 0.93
COL18A1-201ENST00000342220 UBTFP17480 764 aaKnown RBP20.83■□□□□ 0.92
COL18A1-201ENST00000342220 HMGXB3Q12766 1538 aa20.74■□□□□ 0.91
COL18A1-201ENST00000342220 NCAPD3P42695 1498 aa20.63■□□□□ 0.89
COL18A1-201ENST00000342220 SOGA1O94964 1423 aa20.62■□□□□ 0.89
COL18A1-201ENST00000342220 WRNQ14191 1432 aaPredicted RBP eCLIP20.61■□□□□ 0.89
COL18A1-201ENST00000342220 CC2D2AQ9P2K1 1620 aa20.59■□□□□ 0.89
COL18A1-201ENST00000342220 CSRNP3Q8WYN3 585 aa20.57■□□□□ 0.88
COL18A1-201ENST00000342220 RUSC2Q8N2Y8 1516 aa20.52■□□□□ 0.88
COL18A1-201ENST00000342220 PRDM2Q13029 1718 aa20.45■□□□□ 0.86
COL18A1-201ENST00000342220 NESP48681 1621 aa20.43■□□□□ 0.86
COL18A1-201ENST00000342220 CADPSQ9ULU8 1353 aa20.39■□□□□ 0.86
COL18A1-201ENST00000342220 TRIM26Q12899 539 aaPredicted RBP20.38■□□□□ 0.85
COL18A1-201ENST00000342220 ATP1B4Q9UN42 357 aaPredicted RBP20.33■□□□□ 0.85
COL18A1-201ENST00000342220 SYNJ1O43426 1573 aa20.29■□□□□ 0.84
COL18A1-201ENST00000342220 P3H3Q8IVL6 736 aa20.26■□□□□ 0.83
COL18A1-201ENST00000342220 MYT1Q01538 1121 aa20.25■□□□□ 0.83
COL18A1-201ENST00000342220 CFTRP13569 1480 aa20.24■□□□□ 0.83
COL18A1-201ENST00000342220 BIVM-ERCC5R4GMW8 1640 aa20.2■□□□□ 0.82
COL18A1-201ENST00000342220 APLP2Q06481 763 aa20.2■□□□□ 0.82
COL18A1-201ENST00000342220 FANCD2Q9BXW9 1451 aa20.19■□□□□ 0.82
COL18A1-201ENST00000342220 CUX2O14529 1486 aa20.13■□□□□ 0.81
COL18A1-201ENST00000342220 FBLN2P98095 1184 aa20.13■□□□□ 0.81
COL18A1-201ENST00000342220 TOP2BQ02880 1626 aa20.12■□□□□ 0.81
COL18A1-201ENST00000342220 TDRD9Q8NDG6 1382 aaKnown RBP20.11■□□□□ 0.81
COL18A1-201ENST00000342220 CUX1P39880 1505 aa20.11■□□□□ 0.81
COL18A1-201ENST00000342220 CEP162Q5TB80 1403 aa20.09■□□□□ 0.81
COL18A1-201ENST00000342220 RAD54L2Q9Y4B4 1467 aa20.09■□□□□ 0.81
COL18A1-201ENST00000342220 RAPGEF2Q9Y4G8 1499 aa20.06■□□□□ 0.8
COL18A1-201ENST00000342220 KIF27Q86VH2 1401 aa20.06■□□□□ 0.8
COL18A1-201ENST00000342220 FGD5Q6ZNL6 1462 aa20.03■□□□□ 0.8
COL18A1-201ENST00000342220 GOLGA3Q08378 1498 aa20.02■□□□□ 0.8
COL18A1-201ENST00000342220 ARID3CA6NKF2 412 aa20.02■□□□□ 0.8
COL18A1-201ENST00000342220 PDS5BQ9NTI5 1447 aa20.02■□□□□ 0.79
COL18A1-201ENST00000342220 ERCC6Q03468 1493 aa20.01■□□□□ 0.79
COL18A1-201ENST00000342220 CEP164Q9UPV0 1460 aa20.01■□□□□ 0.79
COL18A1-201ENST00000342220 EEA1Q15075 1411 aa20.01■□□□□ 0.79
COL18A1-201ENST00000342220 TNIKQ9UKE5 1360 aa19.97■□□□□ 0.79
COL18A1-201ENST00000342220 SCAF1Q9H7N4 1312 aaKnown RBP19.97■□□□□ 0.79
COL18A1-201ENST00000342220 CLIP1P30622 1438 aa19.96■□□□□ 0.79
COL18A1-201ENST00000342220 HNRNPUL2Q1KMD3 747 aaKnown RBP19.96■□□□□ 0.79
COL18A1-201ENST00000342220 LAMC3Q9Y6N6 1575 aa19.96■□□□□ 0.79
COL18A1-201ENST00000342220 ITGAEP38570 1179 aa19.95■□□□□ 0.78
COL18A1-201ENST00000342220 ZEB1P37275 1124 aaPredicted RBP19.94■□□□□ 0.78
COL18A1-201ENST00000342220 CARMIL1Q5VZK9 1371 aa19.92■□□□□ 0.78
COL18A1-201ENST00000342220 IGF1RP08069 1367 aa19.88■□□□□ 0.77
COL18A1-201ENST00000342220 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.88■□□□□ 0.77
COL18A1-201ENST00000342220 TOPBP1Q92547 1522 aa19.86■□□□□ 0.77
COL18A1-201ENST00000342220 KIF21BO75037 1637 aa19.84■□□□□ 0.77
COL18A1-201ENST00000342220 POLA1P09884 1462 aaPredicted RBP19.84■□□□□ 0.77
COL18A1-201ENST00000342220 URB2Q14146 1524 aaKnown RBP19.82■□□□□ 0.76
COL18A1-201ENST00000342220 AQRO60306 1485 aaKnown RBP eCLIP19.8■□□□□ 0.763e-7■■■■■ 28.1
COL18A1-201ENST00000342220 CCER1Q8TC90 406 aaPredicted RBP19.78■□□□□ 0.76
COL18A1-201ENST00000342220 DNMBPQ6XZF7 1577 aa19.76■□□□□ 0.75
COL18A1-201ENST00000342220 CHMP7Q8WUX9 453 aaPredicted RBP19.74■□□□□ 0.75
COL18A1-201ENST00000342220 WDR97A6NE52 1622 aa19.73■□□□□ 0.75
COL18A1-201ENST00000342220 KANK4Q5T7N3 995 aaPredicted RBP19.7■□□□□ 0.74
COL18A1-201ENST00000342220 KIF21AQ7Z4S6 1674 aa19.7■□□□□ 0.74
COL18A1-201ENST00000342220 PRXQ9BXM0 1461 aa19.67■□□□□ 0.74
COL18A1-201ENST00000342220 ERICH3Q5RHP9 1530 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms