RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 NISCHQ9Y2I1 1504 aa36.45■■■■□ 3.43
VPS28-215ENST00000531924 ABCC9O60706 1549 aa32.62■■■□□ 2.81
VPS28-215ENST00000531924 CCDC180Q9P1Z9 1646 aa32.61■■■□□ 2.81
VPS28-215ENST00000531924 RB1CC1Q8TDY2 1594 aa31.08■■■□□ 2.57
VPS28-215ENST00000531924 DCAF8L2P0C7V8 631 aa30.96■■■□□ 2.55
VPS28-215ENST00000531924 NACADO15069 1562 aa30.87■■■□□ 2.53
VPS28-215ENST00000531924 DNAJC5BQ9UF47 199 aa30.46■■■□□ 2.47
VPS28-215ENST00000531924 MYO15BQ96JP2 1530 aa30.44■■■□□ 2.46
VPS28-215ENST00000531924 PABPN1Q86U42 306 aaKnown RBP eCLIP30.44■■■□□ 2.46
VPS28-215ENST00000531924 ZCCHC6Q5VYS8 1495 aaKnown RBP30.2■■■□□ 2.43
VPS28-215ENST00000531924 UNC13AQ9UPW8 1703 aa30.2■■■□□ 2.43
VPS28-215ENST00000531924 DCAF1Q9Y4B6 1507 aa30.09■■■□□ 2.41
VPS28-215ENST00000531924 BICRAQ9NZM4 1560 aa30.06■■■□□ 2.4
VPS28-215ENST00000531924 SCRIBQ14160 1630 aa29.79■■■□□ 2.36
VPS28-215ENST00000531924 SHROOM4Q9ULL8 1493 aa29.74■■■□□ 2.35
VPS28-215ENST00000531924 CC2D2AQ9P2K1 1620 aa29.42■■■□□ 2.3
VPS28-215ENST00000531924 CECR2Q9BXF3 1484 aa29.38■■■□□ 2.29
VPS28-215ENST00000531924 EIF4G1Q04637 1599 aaKnown RBP29.38■■■□□ 2.29
VPS28-215ENST00000531924 NCAPD3P42695 1498 aa28.5■■■□□ 2.15
VPS28-215ENST00000531924 ATAD2BQ9ULI0 1458 aa28.43■■■□□ 2.14
VPS28-215ENST00000531924 SMARCA4P51532 1647 aa28.39■■■□□ 2.13
VPS28-215ENST00000531924 SMARCA2P51531 1590 aa28.38■■■□□ 2.13
VPS28-215ENST00000531924 BAZ1AQ9NRL2 1556 aaPredicted RBP28.32■■■□□ 2.12
VPS28-215ENST00000531924 HMGXB3Q12766 1538 aa28.27■■■□□ 2.12
VPS28-215ENST00000531924 ERCC6Q03468 1493 aa28.23■■■□□ 2.11
VPS28-215ENST00000531924 BAZ1BQ9UIG0 1483 aaKnown RBP28.21■■■□□ 2.11
VPS28-215ENST00000531924 MROH2BQ7Z745 1585 aa28.07■■■□□ 2.08
VPS28-215ENST00000531924 PEG3Q9GZU2 1588 aa28.07■■■□□ 2.08
VPS28-215ENST00000531924 CUX2O14529 1486 aa28.06■■■□□ 2.08
VPS28-215ENST00000531924 NESP48681 1621 aa28■■■□□ 2.07
VPS28-215ENST00000531924 DNAJC5Q9H3Z4 198 aa27.96■■■□□ 2.07
VPS28-215ENST00000531924 LAMC3Q9Y6N6 1575 aa27.83■■■□□ 2.05
VPS28-215ENST00000531924 PDS5BQ9NTI5 1447 aa27.76■■■□□ 2.04
VPS28-215ENST00000531924 WIZO95785 1651 aa27.73■■■□□ 2.03
VPS28-215ENST00000531924 CADPSQ9ULU8 1353 aa27.69■■■□□ 2.02
VPS28-215ENST00000531924 THOC2Q8NI27 1593 aaKnown RBP27.64■■■□□ 2.01
VPS28-215ENST00000531924 KIF21AQ7Z4S6 1674 aa27.59■■■□□ 2.01
VPS28-215ENST00000531924 RSF1Q96T23 1441 aaPredicted RBP27.57■■■□□ 2
VPS28-215ENST00000531924 MRC2Q9UBG0 1479 aa27.46■■□□□ 1.99
VPS28-215ENST00000531924 TOP2AP11388 1531 aaKnown RBP27.41■■□□□ 1.98
VPS28-215ENST00000531924 CEP164Q9UPV0 1460 aa27.39■■□□□ 1.98
VPS28-215ENST00000531924 FANCD2Q9BXW9 1451 aa27.36■■□□□ 1.97
VPS28-215ENST00000531924 CFTRP13569 1480 aa27.35■■□□□ 1.97
VPS28-215ENST00000531924 WDR62O43379 1518 aa27.33■■□□□ 1.97
VPS28-215ENST00000531924 CCDC88BA6NC98 1476 aa27.13■■□□□ 1.93
VPS28-215ENST00000531924 URB2Q14146 1524 aaKnown RBP27.07■■□□□ 1.92
VPS28-215ENST00000531924 PRDM2Q13029 1718 aa26.97■■□□□ 1.91
VPS28-215ENST00000531924 OSCARQ8IYS5 282 aa26.9■■□□□ 1.9
VPS28-215ENST00000531924 TRIM41Q8WV44 630 aa26.88■■□□□ 1.89
VPS28-215ENST00000531924 IFT140Q96RY7 1462 aa26.84■■□□□ 1.89
VPS28-215ENST00000531924 ABCC8Q09428 1581 aa26.84■■□□□ 1.89
VPS28-215ENST00000531924 TOPBP1Q92547 1522 aa26.82■■□□□ 1.88
VPS28-215ENST00000531924 ZNF608Q9ULD9 1512 aaPredicted RBP26.74■■□□□ 1.87
VPS28-215ENST00000531924 DNMBPQ6XZF7 1577 aa26.73■■□□□ 1.87
VPS28-215ENST00000531924 SUPT5HO00267 1087 aaKnown RBP26.58■■□□□ 1.85
VPS28-215ENST00000531924 EIF4G3O43432 1585 aaKnown RBP26.57■■□□□ 1.84
VPS28-215ENST00000531924 AQRO60306 1485 aaKnown RBP eCLIP26.55■■□□□ 1.841e-9■■■■■ 27.9
VPS28-215ENST00000531924 POLA1P09884 1462 aaPredicted RBP26.55■■□□□ 1.84
VPS28-215ENST00000531924 TARBP1Q13395 1621 aaKnown RBP26.52■■□□□ 1.84
VPS28-215ENST00000531924 SOGA1O94964 1423 aa26.5■■□□□ 1.83
VPS28-215ENST00000531924 FBLN2P98095 1184 aa26.5■■□□□ 1.83
VPS28-215ENST00000531924 RAD54L2Q9Y4B4 1467 aa26.48■■□□□ 1.83
VPS28-215ENST00000531924 TDRD9Q8NDG6 1382 aaKnown RBP26.44■■□□□ 1.82
VPS28-215ENST00000531924 FGD5Q6ZNL6 1462 aa26.42■■□□□ 1.82
VPS28-215ENST00000531924 RIMBP3CA6NJZ7 1639 aa26.39■■□□□ 1.81
VPS28-215ENST00000531924 RIMBP3BA6NNM3 1639 aa26.39■■□□□ 1.81
VPS28-215ENST00000531924 RIMBP3Q9UFD9 1639 aa26.39■■□□□ 1.81
VPS28-215ENST00000531924 CUX1P39880 1505 aa26.38■■□□□ 1.81
VPS28-215ENST00000531924 ARHGEF11O15085 1522 aa26.34■■□□□ 1.81
VPS28-215ENST00000531924 CHD1O14646 1710 aa26.32■■□□□ 1.8
VPS28-215ENST00000531924 WDR97A6NE52 1622 aa26.29■■□□□ 1.8
VPS28-215ENST00000531924 CHMP7Q8WUX9 453 aaPredicted RBP26.29■■□□□ 1.8
VPS28-215ENST00000531924 SNAPC4Q5SXM2 1469 aa26.28■■□□□ 1.8
VPS28-215ENST00000531924 CYB5RLQ6IPT4 315 aa26.27■■□□□ 1.8
VPS28-215ENST00000531924 GRIN2BQ13224 1484 aa26.24■■□□□ 1.79
VPS28-215ENST00000531924 MAGI1Q96QZ7 1491 aaPredicted RBP26.22■■□□□ 1.79
VPS28-215ENST00000531924 GAPVD1Q14C86 1478 aa26.17■■□□□ 1.78
VPS28-215ENST00000531924 SYNJ2O15056 1496 aa26.13■■□□□ 1.77
VPS28-215ENST00000531924 SYNJ1O43426 1573 aa26.12■■□□□ 1.77
VPS28-215ENST00000531924 ABCA10Q8WWZ4 1543 aa26.11■■□□□ 1.77
VPS28-215ENST00000531924 WRNQ14191 1432 aaPredicted RBP eCLIP26.11■■□□□ 1.77
VPS28-215ENST00000531924 ARAP1Q96P48 1450 aa26.08■■□□□ 1.77
VPS28-215ENST00000531924 CLASP1Q7Z460 1538 aa26.04■■□□□ 1.76
VPS28-215ENST00000531924 PBRM1Q86U86 1689 aa26.04■■□□□ 1.76
VPS28-215ENST00000531924 TRHP20396 242 aaPredicted RBP26.01■■□□□ 1.75
VPS28-215ENST00000531924 ABCA5Q8WWZ7 1642 aa26.01■■□□□ 1.75
VPS28-215ENST00000531924 TOP2BQ02880 1626 aa25.98■■□□□ 1.75
VPS28-215ENST00000531924 BIVM-ERCC5R4GMW8 1640 aa25.95■■□□□ 1.74
VPS28-215ENST00000531924 GRIN2AQ12879 1464 aa25.88■■□□□ 1.73
VPS28-215ENST00000531924 FHAD1B1AJZ9 1412 aa25.84■■□□□ 1.73
VPS28-215ENST00000531924 ADAMTS12P58397 1594 aa25.83■■□□□ 1.73
VPS28-215ENST00000531924 ERICH3Q5RHP9 1530 aa25.79■■□□□ 1.72
VPS28-215ENST00000531924 NUP160Q12769 1436 aa25.76■■□□□ 1.71
VPS28-215ENST00000531924 CEP170Q5SW79 1584 aa25.73■■□□□ 1.71
VPS28-215ENST00000531924 ERCC6L2Q5T890 1561 aa25.64■■□□□ 1.69
VPS28-215ENST00000531924 JPH4Q96JJ6 628 aa25.6■■□□□ 1.69
VPS28-215ENST00000531924 KIF27Q86VH2 1401 aa25.59■■□□□ 1.69
VPS28-215ENST00000531924 PRG4Q92954 1404 aaPredicted RBP25.58■■□□□ 1.69
VPS28-215ENST00000531924 SHROOM2Q13796 1616 aa25.58■■□□□ 1.69
VPS28-215ENST00000531924 IGF1RP08069 1367 aa25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms