Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 DHX30-207ENST00000457607 3748 ntTSL 5 BASIC10.53□□□□□ -0.721e-6■■□□□ 12.7
SUB1P53999 DHX30-206ENST00000446256 3660 ntAPPRIS P2 TSL 2 BASIC10.45□□□□□ -0.741e-6■■□□□ 12.7
SUB1P53999 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC10.38□□□□□ -0.751e-6■■□□□ 12.7
SUB1P53999 PSMB4-207ENST00000495805 811 ntTSL 210.35□□□□□ -0.751e-6■■□□□ 12.7
SUB1P53999 BLVRB-202ENST00000595483 649 ntTSL 2 BASIC10.31□□□□□ -0.762e-48■■□□□ 12.7
SUB1P53999 UBE2E3-214ENST00000602970 572 ntTSL 39.53□□□□□ -0.881e-6■■□□□ 12.7
SUB1P53999 DHX30-202ENST00000395745 3887 ntTSL 1 (best)9.51□□□□□ -0.891e-6■■□□□ 12.7
SUB1P53999 GABARAP-203ENST00000571129 568 ntTSL 2 BASIC9.16□□□□□ -0.941e-6■■□□□ 12.7
SUB1P53999 DLG5-203ENST00000459739 3167 ntTSL 1 (best)8.9□□□□□ -0.981e-6■■□□□ 12.7
SUB1P53999 ARL1-201ENST00000261636 3241 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.041e-6■■□□□ 12.7
SUB1P53999 RAB3GAP1-201ENST00000264158 4914 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.091e-6■■□□□ 12.7
SUB1P53999 CS-205ENST00000546891 911 ntTSL 28.01□□□□□ -1.137e-13■■□□□ 12.7
SUB1P53999 RAB3GAP1-203ENST00000442034 4185 ntTSL 1 (best) BASIC7.89□□□□□ -1.151e-6■■□□□ 12.7
SUB1P53999 AK3-204ENST00000611749 4029 ntTSL 4 BASIC7.82□□□□□ -1.161e-6■■□□□ 12.7
SUB1P53999 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.211e-6■■□□□ 12.7
SUB1P53999 FNTA-203ENST00000525099 7327 ntTSL 26.92□□□□□ -1.31e-6■■□□□ 12.7
SUB1P53999 C14orf166-206ENST00000556760 851 ntTSL 5 BASIC6.81□□□□□ -1.321e-6■■□□□ 12.7
SUB1P53999 NOLC1-205ENST00000476468 844 ntTSL 56.53□□□□□ -1.361e-6■■□□□ 12.7
SUB1P53999 ARL1-203ENST00000539055 1231 ntTSL 2 BASIC6.53□□□□□ -1.361e-6■■□□□ 12.7
SUB1P53999 NOLC1-203ENST00000461421 777 ntTSL 36.17□□□□□ -1.421e-6■■□□□ 12.7
SUB1P53999 UBE2E3-210ENST00000602762 340 ntTSL 35.83□□□□□ -1.481e-6■■□□□ 12.7
SUB1P53999 VPS13D-201ENST00000011700 10969 ntTSL 1 (best)5.79□□□□□ -1.481e-6■■□□□ 12.7
SUB1P53999 UBE2E3-211ENST00000602837 814 ntTSL 35.5□□□□□ -1.531e-6■■□□□ 12.7
SUB1P53999 CS-203ENST00000546585 1803 ntTSL 25.43□□□□□ -1.547e-13■■□□□ 12.7
SUB1P53999 VPS13D-202ENST00000460333 4910 ntTSL 25.41□□□□□ -1.541e-6■■□□□ 12.7
SUB1P53999 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC5.41□□□□□ -1.541e-6■■□□□ 12.7
SUB1P53999 VPS13D-209ENST00000487188 3990 ntTSL 25.08□□□□□ -1.61e-6■■□□□ 12.7
SUB1P53999 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.39□□□□□ -1.711e-6■■□□□ 12.7
SUB1P53999 RAB3GAP1-204ENST00000487003 3506 ntTSL 54.37□□□□□ -1.711e-6■■□□□ 12.7
SUB1P53999 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.33□□□□□ -1.721e-6■■□□□ 12.7
SUB1P53999 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC4.3□□□□□ -1.721e-6■■□□□ 12.7
SUB1P53999 C14orf166-203ENST00000553479 562 ntTSL 23.58□□□□□ -1.841e-6■■□□□ 12.7
SUB1P53999 C14orf166-202ENST00000553362 683 ntTSL 23.37□□□□□ -1.871e-6■■□□□ 12.7
SUB1P53999 RAB3GAP1-206ENST00000497080 446 ntTSL 52.23□□□□□ -2.051e-6■■□□□ 12.7
SUB1P53999 ATP5B-202ENST00000547250 840 ntTSL 57.24□□□□□ -1.252e-11■■□□□ 12.6
SUB1P53999 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.292e-6■■□□□ 12.6
SUB1P53999 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.292e-6■■□□□ 12.6
SUB1P53999 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.332e-6■■□□□ 12.6
SUB1P53999 PAICS-204ENST00000505164 1514 ntTSL 211.91□□□□□ -0.51e-6■■□□□ 12.6
SUB1P53999 RHOT2-223ENST00000569706 588 ntTSL 317.68■□□□□ 0.425e-8■■□□□ 12.6
SUB1P53999 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.012e-6■■□□□ 12.6
SUB1P53999 PRKCB-210ENST00000498739 569 ntTSL 412.84□□□□□ -0.352e-6■■□□□ 12.6
SUB1P53999 PRKCB-207ENST00000486868 467 ntTSL 39.36□□□□□ -0.912e-6■■□□□ 12.6
SUB1P53999 MAP1LC3B-206ENST00000564844 3085 ntTSL 1 (best)16.37■□□□□ 0.217e-7■■□□□ 12.6
SUB1P53999 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.47e-7■■□□□ 12.6
SUB1P53999 ATP5B-211ENST00000553007 814 ntTSL 514.28□□□□□ -0.122e-10■■□□□ 12.6
SUB1P53999 ATP5B-205ENST00000548647 682 ntTSL 511.86□□□□□ -0.512e-10■■□□□ 12.6
SUB1P53999 PSMA2-202ENST00000411875 4251 ntTSL 1 (best)6.19□□□□□ -1.428e-8■■□□□ 12.6
SUB1P53999 RPL18-211ENST00000550973 1111 ntTSL 515.44■□□□□ 0.061e-6■■□□□ 12.6
SUB1P53999 RPL18-212ENST00000551749 2091 ntTSL 214.09□□□□□ -0.151e-6■■□□□ 12.6
SUB1P53999 RPL18-213ENST00000552347 1645 ntTSL 513.89□□□□□ -0.191e-6■■□□□ 12.6
SUB1P53999 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.381e-6■■□□□ 12.6
SUB1P53999 RPL18-201ENST00000084795 612 ntTSL 1 (best)12.57□□□□□ -0.41e-6■■□□□ 12.6
SUB1P53999 RPL18-209ENST00000550645 463 ntTSL 5 BASIC12.57□□□□□ -0.41e-6■■□□□ 12.6
SUB1P53999 RPL18-214ENST00000552588 559 ntTSL 3 BASIC12.57□□□□□ -0.41e-6■■□□□ 12.6
SUB1P53999 RPL18-206ENST00000549370 628 ntTSL 512.4□□□□□ -0.421e-6■■□□□ 12.6
SUB1P53999 RPL18-202ENST00000546623 541 ntTSL 511.94□□□□□ -0.51e-6■■□□□ 12.6
SUB1P53999 RPL18-204ENST00000547897 440 ntTSL 510.92□□□□□ -0.661e-6■■□□□ 12.6
SUB1P53999 RPL18-215ENST00000552705 1081 ntTSL 210.02□□□□□ -0.811e-6■■□□□ 12.6
SUB1P53999 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC9.65□□□□□ -0.861e-6■■□□□ 12.6
SUB1P53999 RPL18-203ENST00000547892 3844 nt9.59□□□□□ -0.871e-6■■□□□ 12.6
SUB1P53999 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC21.12■□□□□ 0.971e-6■■□□□ 12.6
SUB1P53999 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC21.12■□□□□ 0.971e-6■■□□□ 12.6
SUB1P53999 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.631e-6■■□□□ 12.6
SUB1P53999 PI4KA-215ENST00000485963 2301 ntTSL 218.94■□□□□ 0.621e-6■■□□□ 12.6
SUB1P53999 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC18.34■□□□□ 0.531e-6■■□□□ 12.6
SUB1P53999 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.191e-6■■□□□ 12.6
SUB1P53999 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.111e-6■■□□□ 12.6
SUB1P53999 NUCB1-212ENST00000492367 1515 ntTSL 215.17■□□□□ 0.021e-6■■□□□ 12.6
SUB1P53999 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC15□□□□□ -0.011e-6■■□□□ 12.6
SUB1P53999 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC14.76□□□□□ -0.051e-6■■□□□ 12.6
SUB1P53999 UBXN7-206ENST00000493566 921 ntTSL 1 (best)13.99□□□□□ -0.171e-6■■□□□ 12.6
SUB1P53999 NORAD-201ENST00000565493 5339 ntBASIC13.79□□□□□ -0.21e-6■■□□□ 12.6
SUB1P53999 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.31e-6■■□□□ 12.6
SUB1P53999 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.31e-6■■□□□ 12.6
SUB1P53999 SSBP1-207ENST00000468267 800 ntTSL 212.8□□□□□ -0.361e-6■■□□□ 12.6
SUB1P53999 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.451e-6■■□□□ 12.6
SUB1P53999 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.521e-6■■□□□ 12.6
SUB1P53999 NUCB1-211ENST00000485798 938 ntTSL 311.51□□□□□ -0.571e-6■■□□□ 12.6
SUB1P53999 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.61e-6■■□□□ 12.6
SUB1P53999 RAP1A-202ENST00000369709 5024 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.741e-6■■□□□ 12.6
SUB1P53999 RAP1A-201ENST00000356415 1586 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.751e-6■■□□□ 12.6
SUB1P53999 POLR1A-203ENST00000409681 6454 ntTSL 5 BASIC8.92□□□□□ -0.981e-6■■□□□ 12.6
SUB1P53999 SSBP1-202ENST00000461433 1694 ntTSL 1 (best)8.69□□□□□ -1.021e-6■■□□□ 12.6
SUB1P53999 PI4KA-214ENST00000485950 479 ntTSL 28.61□□□□□ -1.031e-6■■□□□ 12.6
SUB1P53999 UBXN7-205ENST00000429160 3158 ntTSL 28.44□□□□□ -1.061e-6■■□□□ 12.6
SUB1P53999 MRPS7-206ENST00000583407 864 ntTSL 38.28□□□□□ -1.081e-6■■□□□ 12.6
SUB1P53999 POLR1A-204ENST00000424089 576 ntTSL 38.12□□□□□ -1.111e-6■■□□□ 12.6
SUB1P53999 POLR1A-202ENST00000409024 560 ntTSL 37.87□□□□□ -1.151e-6■■□□□ 12.6
SUB1P53999 POLR1A-208ENST00000486964 1427 ntTSL 57.71□□□□□ -1.171e-6■■□□□ 12.6
SUB1P53999 HADHA-204ENST00000492433 752 ntTSL 27.58□□□□□ -1.28e-13■■□□□ 12.6
SUB1P53999 JTB-204ENST00000428469 520 ntTSL 37.27□□□□□ -1.251e-6■■□□□ 12.6
SUB1P53999 AC013394.1-202ENST00000630790 4499 ntTSL 27.13□□□□□ -1.271e-6■■□□□ 12.6
SUB1P53999 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.391e-6■■□□□ 12.6
SUB1P53999 RAP1A-204ENST00000494982 1083 ntTSL 55.84□□□□□ -1.471e-6■■□□□ 12.6
SUB1P53999 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.551e-6■■□□□ 12.6
SUB1P53999 SSBP1-213ENST00000496622 2620 ntTSL 1 (best)4.75□□□□□ -1.651e-6■■□□□ 12.6
SUB1P53999 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.711e-6■■□□□ 12.6
SUB1P53999 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC2.94□□□□□ -1.941e-6■■□□□ 12.6
SUB1P53999 TTC1-203ENST00000520274 726 ntTSL 32.92□□□□□ -1.941e-6■■□□□ 12.6
Retrieved 100 of 11,644 protein–RNA pairs in 193 ms