RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 PELP1Q8IZL8 1130 aaKnown RBP8.33□□□□□ -1.08
VPS13D-214ENST00000620676 PCGF6Q9BYE7 350 aa8.29□□□□□ -1.08
VPS13D-214ENST00000620676 EHMT2Q96KQ7 1210 aa8.27□□□□□ -1.08
VPS13D-214ENST00000620676 SUPT5HO00267 1087 aaKnown RBP8.19□□□□□ -1.1
VPS13D-214ENST00000620676 PPARGC1BQ86YN6 1023 aaKnown RBP8.16□□□□□ -1.1
VPS13D-214ENST00000620676 MYT1Q01538 1121 aa8.14□□□□□ -1.11
VPS13D-214ENST00000620676 YTHDC1Q96MU7 727 aaKnown RBP8.11□□□□□ -1.11
VPS13D-214ENST00000620676 DCAF8L2P0C7V8 631 aa8.05□□□□□ -1.12
VPS13D-214ENST00000620676 TTBK1Q5TCY1 1321 aaPredicted RBP8.02□□□□□ -1.13
VPS13D-214ENST00000620676 HRCP23327 699 aa7.98□□□□□ -1.13
VPS13D-214ENST00000620676 SHROOM4Q9ULL8 1493 aa7.97□□□□□ -1.13
VPS13D-214ENST00000620676 ERICH6Q7L0X2 663 aa7.94□□□□□ -1.14
VPS13D-214ENST00000620676 CENPBP07199 599 aaPredicted RBP7.93□□□□□ -1.14
VPS13D-214ENST00000620676 FAM9AQ8IZU1 332 aaPredicted RBP7.81□□□□□ -1.16
VPS13D-214ENST00000620676 GTF3C3Q9Y5Q9 886 aa7.78□□□□□ -1.16
VPS13D-214ENST00000620676 CCER1Q8TC90 406 aaPredicted RBP7.77□□□□□ -1.17
VPS13D-214ENST00000620676 SCAF1Q9H7N4 1312 aaKnown RBP7.73□□□□□ -1.17
VPS13D-214ENST00000620676 ZEB1P37275 1124 aaPredicted RBP7.7□□□□□ -1.18
VPS13D-214ENST00000620676 BCANQ96GW7 911 aa7.68□□□□□ -1.18
VPS13D-214ENST00000620676 LOC105371045A0A1W2PR82 267 aa7.64□□□□□ -1.19
VPS13D-214ENST00000620676 NEFLP07196 543 aa7.6□□□□□ -1.19
VPS13D-214ENST00000620676 RANGAP1P46060 587 aaPredicted RBP7.6□□□□□ -1.19
VPS13D-214ENST00000620676 ACIN1Q9UKV3 1341 aaKnown RBP7.58□□□□□ -1.2
VPS13D-214ENST00000620676 DIEXFQ68CQ4 756 aaKnown RBP7.58□□□□□ -1.2
VPS13D-214ENST00000620676 TRIM26Q12899 539 aaPredicted RBP7.57□□□□□ -1.2
VPS13D-214ENST00000620676 BCL11AQ9H165 835 aa7.57□□□□□ -1.2
VPS13D-214ENST00000620676 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.54□□□□□ -1.2
VPS13D-214ENST00000620676 NEUROD1Q13562 356 aa7.54□□□□□ -1.2
VPS13D-214ENST00000620676 EIF5BO60841 1220 aaKnown RBP7.52□□□□□ -1.21
VPS13D-214ENST00000620676 CNGB1Q14028 1251 aaPredicted RBP7.47□□□□□ -1.21
VPS13D-214ENST00000620676 APLP2Q06481 763 aa7.42□□□□□ -1.22
VPS13D-214ENST00000620676 RTL5Q5HYW3 569 aaPredicted RBP7.41□□□□□ -1.22
VPS13D-214ENST00000620676 NBR1Q14596 966 aa7.41□□□□□ -1.22
VPS13D-214ENST00000620676 RTN4Q9NQC3 1192 aaKnown RBP7.39□□□□□ -1.23
VPS13D-214ENST00000620676 HNRNPUL2Q1KMD3 747 aaKnown RBP7.38□□□□□ -1.23
VPS13D-214ENST00000620676 DAXXQ9UER7 740 aaPredicted RBP7.36□□□□□ -1.23
VPS13D-214ENST00000620676 ITGAEP38570 1179 aa7.35□□□□□ -1.23
VPS13D-214ENST00000620676 TRIM41Q8WV44 630 aa7.34□□□□□ -1.23
VPS13D-214ENST00000620676 NISCHQ9Y2I1 1504 aa7.34□□□□□ -1.23
VPS13D-214ENST00000620676 CHIC1Q5VXU3 224 aa7.32□□□□□ -1.24
VPS13D-214ENST00000620676 ANP32EQ9BTT0 268 aa7.32□□□□□ -1.24
VPS13D-214ENST00000620676 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.32□□□□□ -1.24
VPS13D-214ENST00000620676 CCDC136Q96JN2 1154 aa7.3□□□□□ -1.24
VPS13D-214ENST00000620676 CSRNP3Q8WYN3 585 aa7.3□□□□□ -1.24
VPS13D-214ENST00000620676 CDK11AQ9UQ88 783 aaPredicted RBP7.29□□□□□ -1.24
VPS13D-214ENST00000620676 POLR3GLQ9BT43 218 aa7.29□□□□□ -1.24
VPS13D-214ENST00000620676 NPM2Q86SE8 214 aaKnown RBP7.29□□□□□ -1.24
VPS13D-214ENST00000620676 FKBP8Q14318 412 aa7.28□□□□□ -1.24
VPS13D-214ENST00000620676 ZNF316A6NFI3 1004 aaPredicted RBP7.27□□□□□ -1.25
VPS13D-214ENST00000620676 UBTFP17480 764 aaKnown RBP7.25□□□□□ -1.25
VPS13D-214ENST00000620676 IRX6P78412 446 aaPredicted RBP7.25□□□□□ -1.25
VPS13D-214ENST00000620676 MIER1Q8N108 512 aa7.24□□□□□ -1.25
VPS13D-214ENST00000620676 ARXQ96QS3 562 aa7.24□□□□□ -1.25
VPS13D-214ENST00000620676 ATP1B4Q9UN42 357 aaPredicted RBP7.23□□□□□ -1.25
VPS13D-214ENST00000620676 PRKCSHP14314 528 aaPredicted RBP7.19□□□□□ -1.26
VPS13D-214ENST00000620676 GLIPR1L2Q4G1C9 344 aa7.15□□□□□ -1.27
VPS13D-214ENST00000620676 DEKP35659 375 aaKnown RBP7.15□□□□□ -1.27
VPS13D-214ENST00000620676 CLSPNQ9HAW4 1339 aa7.14□□□□□ -1.27
VPS13D-214ENST00000620676 AMER1Q5JTC6 1135 aaPredicted RBP7.13□□□□□ -1.27
VPS13D-214ENST00000620676 ANP32AP39687 249 aaKnown RBP7.11□□□□□ -1.27
VPS13D-214ENST00000620676 ANO8Q9HCE9 1232 aaPredicted RBP7.11□□□□□ -1.27
VPS13D-214ENST00000620676 ARID4BQ4LE39 1312 aaPredicted RBP7.1□□□□□ -1.27
VPS13D-214ENST00000620676 SENP3-EIF4A1A0A087X0R7 540 aa7.1□□□□□ -1.27
VPS13D-214ENST00000620676 LAS1LQ9Y4W2 734 aaKnown RBP7.09□□□□□ -1.27
VPS13D-214ENST00000620676 SUPT16HQ9Y5B9 1047 aaKnown RBP7.08□□□□□ -1.28
VPS13D-214ENST00000620676 TRIM52Q96A61 297 aa7.08□□□□□ -1.28
VPS13D-214ENST00000620676 MYT1LQ9UL68 1186 aa7.07□□□□□ -1.28
VPS13D-214ENST00000620676 TSHZ2Q9NRE2 1034 aa7.05□□□□□ -1.28
VPS13D-214ENST00000620676 ZBTB47Q9UFB7 747 aaPredicted RBP7.03□□□□□ -1.28
VPS13D-214ENST00000620676 ANP32CO43423 234 aa7.02□□□□□ -1.29
VPS13D-214ENST00000620676 RBM19Q9Y4C8 960 aaKnown RBP7.02□□□□□ -1.29
VPS13D-214ENST00000620676 NAP1L5Q96NT1 182 aaPredicted RBP7.01□□□□□ -1.29
VPS13D-214ENST00000620676 ARID3AQ99856 593 aa7.01□□□□□ -1.29
VPS13D-214ENST00000620676 DDX10Q13206 875 aaKnown RBP7.01□□□□□ -1.29
VPS13D-214ENST00000620676 TIMELESSQ9UNS1 1208 aa7□□□□□ -1.29
VPS13D-214ENST00000620676 HIRIP3Q9BW71 556 aaPredicted RBP7□□□□□ -1.29
VPS13D-214ENST00000620676 MYO15BQ96JP2 1530 aa6.99□□□□□ -1.29
VPS13D-214ENST00000620676 A0A0U1RQG5 324 aaPredicted RBP6.99□□□□□ -1.29
VPS13D-214ENST00000620676 SALL2Q9Y467 1007 aaPredicted RBP6.98□□□□□ -1.29
VPS13D-214ENST00000620676 HNRNPUQ00839 825 aaKnown RBP eCLIP6.97□□□□□ -1.29
VPS13D-214ENST00000620676 NEFMP07197 916 aa6.96□□□□□ -1.3
VPS13D-214ENST00000620676 NOP58Q9Y2X3 529 aaKnown RBP6.96□□□□□ -1.3
VPS13D-214ENST00000620676 FAM9BQ8IZU0 186 aa6.95□□□□□ -1.3
VPS13D-214ENST00000620676 ZBTB7CA1YPR0 619 aa6.93□□□□□ -1.3
VPS13D-214ENST00000620676 VSIG10Q8N0Z9 540 aa6.93□□□□□ -1.3
VPS13D-214ENST00000620676 ZNF326Q5BKZ1 582 aaKnown RBP6.92□□□□□ -1.3
VPS13D-214ENST00000620676 FAM50AQ14320 339 aaKnown RBP6.92□□□□□ -1.3
VPS13D-214ENST00000620676 B4GALNT3Q6L9W6 998 aa6.9□□□□□ -1.3
VPS13D-214ENST00000620676 SLC4A1APQ9BWU0 796 aaKnown RBP6.87□□□□□ -1.31
VPS13D-214ENST00000620676 IL27Q8NEV9 243 aa6.86□□□□□ -1.31
VPS13D-214ENST00000620676 TPRNQ4KMQ1 711 aa6.86□□□□□ -1.31
VPS13D-214ENST00000620676 PKNOX2Q96KN3 472 aa6.86□□□□□ -1.31
VPS13D-214ENST00000620676 PODXL2Q9NZ53 605 aa6.85□□□□□ -1.31
VPS13D-214ENST00000620676 KCNH8Q96L42 1107 aa6.85□□□□□ -1.31
VPS13D-214ENST00000620676 HSP90AA1P07900 732 aaKnown RBP6.84□□□□□ -1.31
VPS13D-214ENST00000620676 CANXP27824 592 aaKnown RBP6.84□□□□□ -1.31
VPS13D-214ENST00000620676 ERICH6BQ5W0A0 696 aa6.83□□□□□ -1.32
VPS13D-214ENST00000620676 DCAF1Q9Y4B6 1507 aa6.83□□□□□ -1.32
VPS13D-214ENST00000620676 SPRYD3Q8NCJ5 442 aa6.83□□□□□ -1.32
VPS13D-214ENST00000620676 ANP32BQ92688 251 aaKnown RBP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms