RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 PELP1Q8IZL8 1130 aaKnown RBP10.11□□□□□ -0.79
VPS13D-201ENST00000011700 MYT1Q01538 1121 aa9.75□□□□□ -0.85
VPS13D-201ENST00000011700 FAM9AQ8IZU1 332 aaPredicted RBP9.59□□□□□ -0.87
VPS13D-201ENST00000011700 CCER1Q8TC90 406 aaPredicted RBP9.58□□□□□ -0.88
VPS13D-201ENST00000011700 NISCHQ9Y2I1 1504 aa9.55□□□□□ -0.88
VPS13D-201ENST00000011700 DCAF8L2P0C7V8 631 aa9.43□□□□□ -0.9
VPS13D-201ENST00000011700 YTHDC1Q96MU7 727 aaKnown RBP9.41□□□□□ -0.9
VPS13D-201ENST00000011700 ZEB1P37275 1124 aaPredicted RBP9.37□□□□□ -0.91
VPS13D-201ENST00000011700 APLP2Q06481 763 aa9.37□□□□□ -0.91
VPS13D-201ENST00000011700 CENPBP07199 599 aaPredicted RBP9.31□□□□□ -0.92
VPS13D-201ENST00000011700 ERICH6Q7L0X2 663 aa9.22□□□□□ -0.93
VPS13D-201ENST00000011700 NEFLP07196 543 aa9.09□□□□□ -0.95
VPS13D-201ENST00000011700 SUPT5HO00267 1087 aaKnown RBP9.06□□□□□ -0.96
VPS13D-201ENST00000011700 DAXXQ9UER7 740 aaPredicted RBP8.95□□□□□ -0.98
VPS13D-201ENST00000011700 TTBK1Q5TCY1 1321 aaPredicted RBP8.95□□□□□ -0.98
VPS13D-201ENST00000011700 CLSPNQ9HAW4 1339 aa8.75□□□□□ -1.01
VPS13D-201ENST00000011700 TRIM41Q8WV44 630 aa8.72□□□□□ -1.01
VPS13D-201ENST00000011700 RTL5Q5HYW3 569 aaPredicted RBP8.71□□□□□ -1.01
VPS13D-201ENST00000011700 SHROOM4Q9ULL8 1493 aa8.71□□□□□ -1.01
VPS13D-201ENST00000011700 PCGF6Q9BYE7 350 aa8.71□□□□□ -1.02
VPS13D-201ENST00000011700 MYT1LQ9UL68 1186 aa8.69□□□□□ -1.02
VPS13D-201ENST00000011700 TRIM26Q12899 539 aaPredicted RBP8.67□□□□□ -1.02
VPS13D-201ENST00000011700 ZNF316A6NFI3 1004 aaPredicted RBP8.65□□□□□ -1.02
VPS13D-201ENST00000011700 NEFMP07197 916 aa8.62□□□□□ -1.03
VPS13D-201ENST00000011700 UBTFP17480 764 aaKnown RBP8.62□□□□□ -1.03
VPS13D-201ENST00000011700 GLIPR1L2Q4G1C9 344 aa8.57□□□□□ -1.04
VPS13D-201ENST00000011700 SLC24A1O60721 1099 aa8.56□□□□□ -1.04
VPS13D-201ENST00000011700 ACIN1Q9UKV3 1341 aaKnown RBP8.54□□□□□ -1.04
VPS13D-201ENST00000011700 CCDC180Q9P1Z9 1646 aa8.5□□□□□ -1.05
VPS13D-201ENST00000011700 ANP32BQ92688 251 aaKnown RBP8.5□□□□□ -1.05
VPS13D-201ENST00000011700 ZBTB47Q9UFB7 747 aaPredicted RBP8.49□□□□□ -1.05
VPS13D-201ENST00000011700 ATP1B4Q9UN42 357 aaPredicted RBP8.46□□□□□ -1.06
VPS13D-201ENST00000011700 EIF5BO60841 1220 aaKnown RBP8.45□□□□□ -1.06
VPS13D-201ENST00000011700 HRCP23327 699 aa8.42□□□□□ -1.06
VPS13D-201ENST00000011700 CDK11AQ9UQ88 783 aaPredicted RBP8.4□□□□□ -1.06
VPS13D-201ENST00000011700 EHMT2Q96KQ7 1210 aa8.39□□□□□ -1.07
VPS13D-201ENST00000011700 ANP32EQ9BTT0 268 aa8.38□□□□□ -1.07
VPS13D-201ENST00000011700 ANP32AP39687 249 aaKnown RBP8.37□□□□□ -1.07
VPS13D-201ENST00000011700 UPF2Q9HAU5 1272 aaKnown RBP8.35□□□□□ -1.07
VPS13D-201ENST00000011700 DIEXFQ68CQ4 756 aaKnown RBP8.34□□□□□ -1.07
VPS13D-201ENST00000011700 ANP32CO43423 234 aa8.32□□□□□ -1.08
VPS13D-201ENST00000011700 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.24□□□□□ -1.09
VPS13D-201ENST00000011700 HNRNPUL2Q1KMD3 747 aaKnown RBP8.24□□□□□ -1.09
VPS13D-201ENST00000011700 CANXP27824 592 aaKnown RBP8.22□□□□□ -1.09
VPS13D-201ENST00000011700 TNNT2P45379 298 aaPredicted RBP8.22□□□□□ -1.09
VPS13D-201ENST00000011700 HSP90AA1P07900 732 aaKnown RBP8.21□□□□□ -1.09
VPS13D-201ENST00000011700 RANGAP1P46060 587 aaPredicted RBP8.21□□□□□ -1.1
VPS13D-201ENST00000011700 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.21□□□□□ -1.1
VPS13D-201ENST00000011700 TRIM44Q96DX7 344 aaPredicted RBP8.19□□□□□ -1.1
VPS13D-201ENST00000011700 CDK11BP21127 795 aaKnown RBP8.18□□□□□ -1.1
VPS13D-201ENST00000011700 ARID4BQ4LE39 1312 aaPredicted RBP8.18□□□□□ -1.1
VPS13D-201ENST00000011700 DCAF1Q9Y4B6 1507 aa8.18□□□□□ -1.1
VPS13D-201ENST00000011700 SLC4A1APQ9BWU0 796 aaKnown RBP8.17□□□□□ -1.1
VPS13D-201ENST00000011700 NCLP19338 710 aaKnown RBP8.16□□□□□ -1.1
VPS13D-201ENST00000011700 POLR3GLQ9BT43 218 aa8.16□□□□□ -1.1
VPS13D-201ENST00000011700 NEUROD1Q13562 356 aa8.14□□□□□ -1.11
VPS13D-201ENST00000011700 BECN1Q14457 450 aa8.12□□□□□ -1.11
VPS13D-201ENST00000011700 GOLGA6L22H0YM25 854 aa8.12□□□□□ -1.11
VPS13D-201ENST00000011700 CFAP44Q96MT7 982 aa8.12□□□□□ -1.11
VPS13D-201ENST00000011700 CHMP4BQ9H444 224 aaKnown RBP8.12□□□□□ -1.11
VPS13D-201ENST00000011700 DDRGK1Q96HY6 314 aa8.12□□□□□ -1.11
VPS13D-201ENST00000011700 EEA1Q15075 1411 aa8.1□□□□□ -1.11
VPS13D-201ENST00000011700 MYH16Q9H6N6 1097 aa8.09□□□□□ -1.11
VPS13D-201ENST00000011700 FAM50AQ14320 339 aaKnown RBP8.08□□□□□ -1.12
VPS13D-201ENST00000011700 NRDCO43847 1150 aa8.08□□□□□ -1.12
VPS13D-201ENST00000011700 L1TD1Q5T7N2 865 aaKnown RBP8.08□□□□□ -1.12
VPS13D-201ENST00000011700 ITGAEP38570 1179 aa8.07□□□□□ -1.12
VPS13D-201ENST00000011700 TONSLQ96HA7 1378 aa8.07□□□□□ -1.12
VPS13D-201ENST00000011700 CHIC1Q5VXU3 224 aa8.07□□□□□ -1.12
VPS13D-201ENST00000011700 TRIM52Q96A61 297 aa8.07□□□□□ -1.12
VPS13D-201ENST00000011700 USP35Q9P2H5 1018 aa8.06□□□□□ -1.12
VPS13D-201ENST00000011700 GOLGA6L6A8MZA4 724 aa8.06□□□□□ -1.12
VPS13D-201ENST00000011700 ESF1Q9H501 851 aaKnown RBP8.05□□□□□ -1.12
VPS13D-201ENST00000011700 ERICH6BQ5W0A0 696 aa8.04□□□□□ -1.12
VPS13D-201ENST00000011700 CASC1Q6TDU7 716 aa8.04□□□□□ -1.12
VPS13D-201ENST00000011700 PTMSP20962 102 aa8.03□□□□□ -1.12
VPS13D-201ENST00000011700 ZRSR1Q15695 479 aaKnown RBP8.03□□□□□ -1.12
VPS13D-201ENST00000011700 CDCA8Q53HL2 280 aa8.02□□□□□ -1.13
VPS13D-201ENST00000011700 GTF3C3Q9Y5Q9 886 aa8.02□□□□□ -1.13
VPS13D-201ENST00000011700 RB1CC1Q8TDY2 1594 aa8□□□□□ -1.13
VPS13D-201ENST00000011700 MS4A1P11836 297 aa8□□□□□ -1.13
VPS13D-201ENST00000011700 RSF1Q96T23 1441 aaPredicted RBP7.99□□□□□ -1.13
VPS13D-201ENST00000011700 HAP1P54257 671 aaPredicted RBP7.98□□□□□ -1.13
VPS13D-201ENST00000011700 CHAF1AQ13111 956 aaPredicted RBP7.98□□□□□ -1.13
VPS13D-201ENST00000011700 KAT6BQ8WYB5 2073 aa7.97□□□□□ -1.13
VPS13D-201ENST00000011700 ANO8Q9HCE9 1232 aaPredicted RBP7.96□□□□□ -1.13
VPS13D-201ENST00000011700 NACADO15069 1562 aa7.96□□□□□ -1.14
VPS13D-201ENST00000011700 PLPPR3Q6T4P5 718 aa7.96□□□□□ -1.14
VPS13D-201ENST00000011700 CHMP4AQ9BY43 222 aa7.96□□□□□ -1.14
VPS13D-201ENST00000011700 PPM1GO15355 546 aaPredicted RBP7.95□□□□□ -1.14
VPS13D-201ENST00000011700 PNNQ9H307 717 aaKnown RBP7.95□□□□□ -1.14
VPS13D-201ENST00000011700 CCDC136Q96JN2 1154 aa7.95□□□□□ -1.14
VPS13D-201ENST00000011700 NPM1P06748 294 aaKnown RBP eCLIP7.94□□□□□ -1.14
VPS13D-201ENST00000011700 WDR43Q15061 677 aaKnown RBP eCLIP7.94□□□□□ -1.14
VPS13D-201ENST00000011700 TMC1Q8TDI8 760 aa7.93□□□□□ -1.14
VPS13D-201ENST00000011700 NPM2Q86SE8 214 aaKnown RBP7.93□□□□□ -1.14
VPS13D-201ENST00000011700 ZCCHC6Q5VYS8 1495 aaKnown RBP7.92□□□□□ -1.14
VPS13D-201ENST00000011700 SCRIBQ14160 1630 aa7.9□□□□□ -1.14
VPS13D-201ENST00000011700 CCDC34Q96HJ3 373 aa7.89□□□□□ -1.15
VPS13D-201ENST00000011700 CEP162Q5TB80 1403 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms