RNA–Protein interactions for RNA: ENST00000498739.1

PRKCB-210, Transcript of protein kinase C beta, humanhuman

TSL 4

Gene PRKCB, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCB-210ENST00000498739 NISCHQ9Y2I1 1504 aa40.43■■■■■ 4.06
PRKCB-210ENST00000498739 CCDC180Q9P1Z9 1646 aa35.87■■■■□ 3.33
PRKCB-210ENST00000498739 ABCC9O60706 1549 aa35.01■■■■□ 3.2
PRKCB-210ENST00000498739 DCAF8L2P0C7V8 631 aa33.79■■■■□ 3
PRKCB-210ENST00000498739 ZCCHC6Q5VYS8 1495 aaKnown RBP33.72■■■□□ 2.99
PRKCB-210ENST00000498739 RB1CC1Q8TDY2 1594 aa33.72■■■□□ 2.99
PRKCB-210ENST00000498739 NACADO15069 1562 aa33.69■■■□□ 2.98
PRKCB-210ENST00000498739 MYO15BQ96JP2 1530 aa33.51■■■□□ 2.95
PRKCB-210ENST00000498739 DCAF1Q9Y4B6 1507 aa33.43■■■□□ 2.94
PRKCB-210ENST00000498739 UNC13AQ9UPW8 1703 aa32.93■■■□□ 2.86
PRKCB-210ENST00000498739 SCRIBQ14160 1630 aa32.8■■■□□ 2.84
PRKCB-210ENST00000498739 PABPN1Q86U42 306 aaKnown RBP eCLIP32.75■■■□□ 2.83
PRKCB-210ENST00000498739 BICRAQ9NZM4 1560 aa32.68■■■□□ 2.82
PRKCB-210ENST00000498739 SHROOM4Q9ULL8 1493 aa32.33■■■□□ 2.77
PRKCB-210ENST00000498739 DNAJC5BQ9UF47 199 aa31.97■■■□□ 2.71
PRKCB-210ENST00000498739 EIF4G1Q04637 1599 aaKnown RBP31.82■■■□□ 2.68
PRKCB-210ENST00000498739 CC2D2AQ9P2K1 1620 aa31.66■■■□□ 2.66
PRKCB-210ENST00000498739 CECR2Q9BXF3 1484 aa31.5■■■□□ 2.63
PRKCB-210ENST00000498739 SMARCA4P51532 1647 aa31.35■■■□□ 2.61
PRKCB-210ENST00000498739 BAZ1AQ9NRL2 1556 aaPredicted RBP31.34■■■□□ 2.61
PRKCB-210ENST00000498739 MROH2BQ7Z745 1585 aa31.17■■■□□ 2.58
PRKCB-210ENST00000498739 ATAD2BQ9ULI0 1458 aa31.14■■■□□ 2.57
PRKCB-210ENST00000498739 SMARCA2P51531 1590 aa31.11■■■□□ 2.57
PRKCB-210ENST00000498739 NCAPD3P42695 1498 aa31.08■■■□□ 2.57
PRKCB-210ENST00000498739 PEG3Q9GZU2 1588 aa31.01■■■□□ 2.56
PRKCB-210ENST00000498739 HMGXB3Q12766 1538 aa30.96■■■□□ 2.55
PRKCB-210ENST00000498739 BAZ1BQ9UIG0 1483 aaKnown RBP30.91■■■□□ 2.54
PRKCB-210ENST00000498739 RSF1Q96T23 1441 aaPredicted RBP30.86■■■□□ 2.53
PRKCB-210ENST00000498739 WIZO95785 1651 aa30.85■■■□□ 2.53
PRKCB-210ENST00000498739 TOP2AP11388 1531 aaKnown RBP30.53■■■□□ 2.48
PRKCB-210ENST00000498739 NESP48681 1621 aa30.33■■■□□ 2.45
PRKCB-210ENST00000498739 LAMC3Q9Y6N6 1575 aa30.26■■■□□ 2.43
PRKCB-210ENST00000498739 SUPT5HO00267 1087 aaKnown RBP30.24■■■□□ 2.43
PRKCB-210ENST00000498739 CADPSQ9ULU8 1353 aa30.2■■■□□ 2.43
PRKCB-210ENST00000498739 ERCC6Q03468 1493 aa30.18■■■□□ 2.42
PRKCB-210ENST00000498739 CCDC88BA6NC98 1476 aa30.17■■■□□ 2.42
PRKCB-210ENST00000498739 PDS5BQ9NTI5 1447 aa30.05■■■□□ 2.4
PRKCB-210ENST00000498739 CFTRP13569 1480 aa30.05■■■□□ 2.4
PRKCB-210ENST00000498739 KIF21AQ7Z4S6 1674 aa29.97■■■□□ 2.39
PRKCB-210ENST00000498739 FANCD2Q9BXW9 1451 aa29.87■■■□□ 2.37
PRKCB-210ENST00000498739 THOC2Q8NI27 1593 aaKnown RBP29.83■■■□□ 2.37
PRKCB-210ENST00000498739 CEP164Q9UPV0 1460 aa29.83■■■□□ 2.37
PRKCB-210ENST00000498739 PRDM2Q13029 1718 aa29.82■■■□□ 2.36
PRKCB-210ENST00000498739 CUX2O14529 1486 aa29.77■■■□□ 2.36
PRKCB-210ENST00000498739 MRC2Q9UBG0 1479 aa29.75■■■□□ 2.35
PRKCB-210ENST00000498739 WDR62O43379 1518 aa29.64■■■□□ 2.34
PRKCB-210ENST00000498739 URB2Q14146 1524 aaKnown RBP29.56■■■□□ 2.32
PRKCB-210ENST00000498739 TOPBP1Q92547 1522 aa29.4■■■□□ 2.3
PRKCB-210ENST00000498739 ABCC8Q09428 1581 aa29.39■■■□□ 2.3
PRKCB-210ENST00000498739 DNMBPQ6XZF7 1577 aa29.39■■■□□ 2.29
PRKCB-210ENST00000498739 CUX1P39880 1505 aa29.24■■■□□ 2.27
PRKCB-210ENST00000498739 IFT140Q96RY7 1462 aa29.19■■■□□ 2.26
PRKCB-210ENST00000498739 POLA1P09884 1462 aaPredicted RBP29.17■■■□□ 2.26
PRKCB-210ENST00000498739 FGD5Q6ZNL6 1462 aa29.13■■■□□ 2.25
PRKCB-210ENST00000498739 WRNQ14191 1432 aaPredicted RBP eCLIP29.11■■■□□ 2.255e-6■■■■■ 29.2
PRKCB-210ENST00000498739 TARBP1Q13395 1621 aaKnown RBP29.06■■■□□ 2.24
PRKCB-210ENST00000498739 RAD54L2Q9Y4B4 1467 aa29.05■■■□□ 2.24
PRKCB-210ENST00000498739 SOGA1O94964 1423 aa29.05■■■□□ 2.24
PRKCB-210ENST00000498739 ZNF608Q9ULD9 1512 aaPredicted RBP29.04■■■□□ 2.24
PRKCB-210ENST00000498739 SYNJ1O43426 1573 aa29.04■■■□□ 2.24
PRKCB-210ENST00000498739 TOP2BQ02880 1626 aa29.02■■■□□ 2.24
PRKCB-210ENST00000498739 BIVM-ERCC5R4GMW8 1640 aa29.02■■■□□ 2.24
PRKCB-210ENST00000498739 EIF4G3O43432 1585 aaKnown RBP28.95■■■□□ 2.22
PRKCB-210ENST00000498739 AQRO60306 1485 aaKnown RBP eCLIP28.91■■■□□ 2.225e-7■■■■□ 20.9
PRKCB-210ENST00000498739 TDRD9Q8NDG6 1382 aaKnown RBP28.88■■■□□ 2.21
PRKCB-210ENST00000498739 WDR97A6NE52 1622 aa28.87■■■□□ 2.21
PRKCB-210ENST00000498739 ABCA10Q8WWZ4 1543 aa28.83■■■□□ 2.21
PRKCB-210ENST00000498739 GAPVD1Q14C86 1478 aa28.72■■■□□ 2.19
PRKCB-210ENST00000498739 ABCA5Q8WWZ7 1642 aa28.71■■■□□ 2.19
PRKCB-210ENST00000498739 GRIN2BQ13224 1484 aa28.7■■■□□ 2.18
PRKCB-210ENST00000498739 DNAJC5Q9H3Z4 198 aa28.67■■■□□ 2.18
PRKCB-210ENST00000498739 SNAPC4Q5SXM2 1469 aa28.66■■■□□ 2.18
PRKCB-210ENST00000498739 PBRM1Q86U86 1689 aa28.65■■■□□ 2.18
PRKCB-210ENST00000498739 MAGI1Q96QZ7 1491 aaPredicted RBP28.59■■■□□ 2.17
PRKCB-210ENST00000498739 OSCARQ8IYS5 282 aa28.57■■■□□ 2.16
PRKCB-210ENST00000498739 FBLN2P98095 1184 aa28.56■■■□□ 2.16
PRKCB-210ENST00000498739 CHD1O14646 1710 aa28.55■■■□□ 2.16
PRKCB-210ENST00000498739 TRIM41Q8WV44 630 aa28.53■■■□□ 2.16
PRKCB-210ENST00000498739 SYNJ2O15056 1496 aa28.49■■■□□ 2.15
PRKCB-210ENST00000498739 CHMP7Q8WUX9 453 aaPredicted RBP28.49■■■□□ 2.15
PRKCB-210ENST00000498739 KIF27Q86VH2 1401 aa28.49■■■□□ 2.15
PRKCB-210ENST00000498739 ERICH3Q5RHP9 1530 aa28.48■■■□□ 2.15
PRKCB-210ENST00000498739 ADAMTS12P58397 1594 aa28.44■■■□□ 2.14
PRKCB-210ENST00000498739 FHAD1B1AJZ9 1412 aa28.39■■■□□ 2.14
PRKCB-210ENST00000498739 IGF1RP08069 1367 aa28.33■■■□□ 2.13
PRKCB-210ENST00000498739 GRIN2AQ12879 1464 aa28.33■■■□□ 2.13
PRKCB-210ENST00000498739 RUSC2Q8N2Y8 1516 aa28.28■■■□□ 2.12
PRKCB-210ENST00000498739 CUL7Q14999 1698 aa28.27■■■□□ 2.12
PRKCB-210ENST00000498739 CHIC1Q5VXU3 224 aa28.26■■■□□ 2.11
PRKCB-210ENST00000498739 CLASP1Q7Z460 1538 aa28.23■■■□□ 2.11
PRKCB-210ENST00000498739 CARMIL1Q5VZK9 1371 aa28.19■■■□□ 2.1
PRKCB-210ENST00000498739 CEP170Q5SW79 1584 aa28.19■■■□□ 2.1
PRKCB-210ENST00000498739 NUP160Q12769 1436 aa28.18■■■□□ 2.1
PRKCB-210ENST00000498739 ARHGEF11O15085 1522 aa28.11■■■□□ 2.09
PRKCB-210ENST00000498739 RIMBP3CA6NJZ7 1639 aa28.1■■■□□ 2.09
PRKCB-210ENST00000498739 RIMBP3BA6NNM3 1639 aa28.1■■■□□ 2.09
PRKCB-210ENST00000498739 RIMBP3Q9UFD9 1639 aa28.1■■■□□ 2.09
PRKCB-210ENST00000498739 RAPGEF2Q9Y4G8 1499 aa28.04■■■□□ 2.08
PRKCB-210ENST00000498739 EEA1Q15075 1411 aa28.02■■■□□ 2.08
PRKCB-210ENST00000498739 FAM9AQ8IZU1 332 aaPredicted RBP27.98■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms