RNA–Protein interactions for RNA: ENST00000301019.8

CDT1-201, Transcript of chromatin licensing and DNA replication factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDT1, Length 3,240 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1-201ENST00000301019 NISCHQ9Y2I1 1504 aa27.83■■■□□ 2.05
CDT1-201ENST00000301019 PPARGC1BQ86YN6 1023 aaKnown RBP24.69■■□□□ 1.54
CDT1-201ENST00000301019 HRCP23327 699 aa24.49■■□□□ 1.51
CDT1-201ENST00000301019 PCGF6Q9BYE7 350 aa24.36■■□□□ 1.49
CDT1-201ENST00000301019 CCDC180Q9P1Z9 1646 aa24.21■■□□□ 1.47
CDT1-201ENST00000301019 SUPT5HO00267 1087 aaKnown RBP24.07■■□□□ 1.44
CDT1-201ENST00000301019 SHROOM4Q9ULL8 1493 aa23.96■■□□□ 1.43
CDT1-201ENST00000301019 PELP1Q8IZL8 1130 aaKnown RBP23.85■■□□□ 1.41
CDT1-201ENST00000301019 SCAF1Q9H7N4 1312 aaKnown RBP23.69■■□□□ 1.38
CDT1-201ENST00000301019 MYO15BQ96JP2 1530 aa23.4■■□□□ 1.34
CDT1-201ENST00000301019 ZCCHC6Q5VYS8 1495 aaKnown RBP23.36■■□□□ 1.33
CDT1-201ENST00000301019 LOC105371045A0A1W2PR82 267 aa23.25■■□□□ 1.31
CDT1-201ENST00000301019 CHIC1Q5VXU3 224 aa23.2■■□□□ 1.3
CDT1-201ENST00000301019 DCAF8L2P0C7V8 631 aa23.13■■□□□ 1.29
CDT1-201ENST00000301019 ABCC9O60706 1549 aa23.06■■□□□ 1.28
CDT1-201ENST00000301019 DCAF1Q9Y4B6 1507 aa22.97■■□□□ 1.27
CDT1-201ENST00000301019 NEUROD1Q13562 356 aa22.95■■□□□ 1.26
CDT1-201ENST00000301019 EHMT2Q96KQ7 1210 aa22.94■■□□□ 1.26
CDT1-201ENST00000301019 GTF3C3Q9Y5Q9 886 aa22.93■■□□□ 1.26
CDT1-201ENST00000301019 TRIM26Q12899 539 aaPredicted RBP22.87■■□□□ 1.25
CDT1-201ENST00000301019 MYT1Q01538 1121 aa22.83■■□□□ 1.25
CDT1-201ENST00000301019 ACIN1Q9UKV3 1341 aaKnown RBP22.78■■□□□ 1.24
CDT1-201ENST00000301019 YTHDC1Q96MU7 727 aaKnown RBP22.63■■□□□ 1.21
CDT1-201ENST00000301019 NACADO15069 1562 aa22.6■■□□□ 1.21
CDT1-201ENST00000301019 ZEB1P37275 1124 aaPredicted RBP22.54■■□□□ 1.2
CDT1-201ENST00000301019 FAM9AQ8IZU1 332 aaPredicted RBP22.49■■□□□ 1.19
CDT1-201ENST00000301019 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.44■■□□□ 1.18
CDT1-201ENST00000301019 RB1CC1Q8TDY2 1594 aa22.43■■□□□ 1.18
CDT1-201ENST00000301019 CENPBP07199 599 aaPredicted RBP22.42■■□□□ 1.18
CDT1-201ENST00000301019 TTBK1Q5TCY1 1321 aaPredicted RBP22.36■■□□□ 1.17
CDT1-201ENST00000301019 SCRIBQ14160 1630 aa22.34■■□□□ 1.17
CDT1-201ENST00000301019 DIEXFQ68CQ4 756 aaKnown RBP22.33■■□□□ 1.16
CDT1-201ENST00000301019 CCER1Q8TC90 406 aaPredicted RBP22.28■■□□□ 1.16
CDT1-201ENST00000301019 BCL11AQ9H165 835 aa22.13■■□□□ 1.13
CDT1-201ENST00000301019 UNC13AQ9UPW8 1703 aa21.93■■□□□ 1.1
CDT1-201ENST00000301019 TRIM41Q8WV44 630 aa21.81■■□□□ 1.08
CDT1-201ENST00000301019 MIER1Q8N108 512 aa21.8■■□□□ 1.08
CDT1-201ENST00000301019 PABPN1Q86U42 306 aaKnown RBP eCLIP21.78■■□□□ 1.08
CDT1-201ENST00000301019 BICRAQ9NZM4 1560 aa21.76■■□□□ 1.07
CDT1-201ENST00000301019 CSRNP3Q8WYN3 585 aa21.75■■□□□ 1.07
CDT1-201ENST00000301019 CECR2Q9BXF3 1484 aa21.67■■□□□ 1.06
CDT1-201ENST00000301019 ANP32EQ9BTT0 268 aa21.67■■□□□ 1.06
CDT1-201ENST00000301019 BCANQ96GW7 911 aa21.64■■□□□ 1.05
CDT1-201ENST00000301019 RSF1Q96T23 1441 aaPredicted RBP21.61■■□□□ 1.05
CDT1-201ENST00000301019 ZNF316A6NFI3 1004 aaPredicted RBP21.59■■□□□ 1.05
CDT1-201ENST00000301019 MROH2BQ7Z745 1585 aa21.52■■□□□ 1.04
CDT1-201ENST00000301019 TSHZ2Q9NRE2 1034 aa21.51■■□□□ 1.03
CDT1-201ENST00000301019 PRKCSHP14314 528 aaPredicted RBP21.49■■□□□ 1.03
CDT1-201ENST00000301019 SUPT16HQ9Y5B9 1047 aaKnown RBP21.49■■□□□ 1.03
CDT1-201ENST00000301019 BAZ1AQ9NRL2 1556 aaPredicted RBP21.48■■□□□ 1.03
CDT1-201ENST00000301019 SMARCA4P51532 1647 aa21.39■■□□□ 1.01
CDT1-201ENST00000301019 HNRNPUL2Q1KMD3 747 aaKnown RBP21.33■■□□□ 1
CDT1-201ENST00000301019 WIZO95785 1651 aa21.32■■□□□ 1
CDT1-201ENST00000301019 ITGAEP38570 1179 aa21.21■□□□□ 0.99
CDT1-201ENST00000301019 EIF4G1Q04637 1599 aaKnown RBP21.12■□□□□ 0.97
CDT1-201ENST00000301019 PEG3Q9GZU2 1588 aa21.11■□□□□ 0.97
CDT1-201ENST00000301019 KCNH8Q96L42 1107 aa21.1■□□□□ 0.97
CDT1-201ENST00000301019 FKBP8Q14318 412 aa21.09■□□□□ 0.97
CDT1-201ENST00000301019 TOP2AP11388 1531 aaKnown RBP21.09■□□□□ 0.97
CDT1-201ENST00000301019 ATAD2BQ9ULI0 1458 aa21.08■□□□□ 0.96
CDT1-201ENST00000301019 SMARCA2P51531 1590 aa21.03■□□□□ 0.96
CDT1-201ENST00000301019 RBM19Q9Y4C8 960 aaKnown RBP21.02■□□□□ 0.95
CDT1-201ENST00000301019 RANGAP1P46060 587 aaPredicted RBP21■□□□□ 0.95
CDT1-201ENST00000301019 ANO8Q9HCE9 1232 aaPredicted RBP20.97■□□□□ 0.95
CDT1-201ENST00000301019 BAZ1BQ9UIG0 1483 aaKnown RBP20.96■□□□□ 0.95
CDT1-201ENST00000301019 ERICH6Q7L0X2 663 aa20.95■□□□□ 0.94
CDT1-201ENST00000301019 CCDC88BA6NC98 1476 aa20.91■□□□□ 0.94
CDT1-201ENST00000301019 MSH5O43196 834 aa20.9■□□□□ 0.94
CDT1-201ENST00000301019 NCAPD3P42695 1498 aa20.9■□□□□ 0.94
CDT1-201ENST00000301019 CCDC136Q96JN2 1154 aa20.87■□□□□ 0.93
CDT1-201ENST00000301019 UBTFP17480 764 aaKnown RBP20.85■□□□□ 0.93
CDT1-201ENST00000301019 HMGXB3Q12766 1538 aa20.83■□□□□ 0.93
CDT1-201ENST00000301019 CC2D2AQ9P2K1 1620 aa20.82■□□□□ 0.92
CDT1-201ENST00000301019 IRX6P78412 446 aaPredicted RBP20.8■□□□□ 0.92
CDT1-201ENST00000301019 TRIM52Q96A61 297 aa20.79■□□□□ 0.92
CDT1-201ENST00000301019 NBR1Q14596 966 aa20.75■□□□□ 0.91
CDT1-201ENST00000301019 RTN4Q9NQC3 1192 aaKnown RBP20.74■□□□□ 0.91
CDT1-201ENST00000301019 NEFLP07196 543 aa20.73■□□□□ 0.91
CDT1-201ENST00000301019 DEKP35659 375 aaKnown RBP20.69■□□□□ 0.9
CDT1-201ENST00000301019 SALL2Q9Y467 1007 aaPredicted RBP20.67■□□□□ 0.9
CDT1-201ENST00000301019 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.65■□□□□ 0.9
CDT1-201ENST00000301019 HIRIP3Q9BW71 556 aaPredicted RBP20.64■□□□□ 0.89
CDT1-201ENST00000301019 CLSPNQ9HAW4 1339 aa20.62■□□□□ 0.89
CDT1-201ENST00000301019 DDX10Q13206 875 aaKnown RBP20.57■□□□□ 0.88
CDT1-201ENST00000301019 CEP162Q5TB80 1403 aa20.53■□□□□ 0.88
CDT1-201ENST00000301019 ABCC8Q09428 1581 aa20.46■□□□□ 0.87
CDT1-201ENST00000301019 APLP2Q06481 763 aa20.46■□□□□ 0.87
CDT1-201ENST00000301019 CFTRP13569 1480 aa20.43■□□□□ 0.86
CDT1-201ENST00000301019 IL27Q8NEV9 243 aa20.42■□□□□ 0.86
CDT1-201ENST00000301019 DNAJC5BQ9UF47 199 aa20.42■□□□□ 0.86
CDT1-201ENST00000301019 CDK11AQ9UQ88 783 aaPredicted RBP20.42■□□□□ 0.86
CDT1-201ENST00000301019 CADPSQ9ULU8 1353 aa20.38■□□□□ 0.85
CDT1-201ENST00000301019 WRNQ14191 1432 aaPredicted RBP eCLIP20.34■□□□□ 0.85
CDT1-201ENST00000301019 EIF5BO60841 1220 aaKnown RBP20.31■□□□□ 0.84
CDT1-201ENST00000301019 PAK3O75914 559 aaPredicted RBP20.31■□□□□ 0.84
CDT1-201ENST00000301019 SOGA1O94964 1423 aa20.29■□□□□ 0.84
CDT1-201ENST00000301019 SENP3-EIF4A1A0A087X0R7 540 aa20.25■□□□□ 0.83
CDT1-201ENST00000301019 B4GALNT3Q6L9W6 998 aa20.25■□□□□ 0.83
CDT1-201ENST00000301019 SYNJ1O43426 1573 aa20.23■□□□□ 0.83
CDT1-201ENST00000301019 NESP48681 1621 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms