RNA–Protein interactions for RNA: ENST00000564844.1

MAP1LC3B-206, Transcript of microtubule associated protein 1 light chain 3 beta, humanhuman

TSL 1 (best)

Gene MAP1LC3B, Length 3,085 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MAP1LC3B-206ENST00000564844 NISCHQ9Y2I1 1504 aa39.28■■■■□ 3.88
MAP1LC3B-206ENST00000564844 SHROOM4Q9ULL8 1493 aa35.46■■■■□ 3.27
MAP1LC3B-206ENST00000564844 SUPT5HO00267 1087 aaKnown RBP35.2■■■■□ 3.23
MAP1LC3B-206ENST00000564844 HRCP23327 699 aa34.37■■■■□ 3.09
MAP1LC3B-206ENST00000564844 DCAF8L2P0C7V8 631 aa34.35■■■■□ 3.09
MAP1LC3B-206ENST00000564844 PCGF6Q9BYE7 350 aa34.34■■■■□ 3.09
MAP1LC3B-206ENST00000564844 PPARGC1BQ86YN6 1023 aaKnown RBP34.24■■■■□ 3.07
MAP1LC3B-206ENST00000564844 MYO15BQ96JP2 1530 aa34.09■■■■□ 3.05
MAP1LC3B-206ENST00000564844 CHIC1Q5VXU3 224 aa34.03■■■■□ 3.04
MAP1LC3B-206ENST00000564844 LOC105371045A0A1W2PR82 267 aa33.61■■■□□ 2.97
MAP1LC3B-206ENST00000564844 ZCCHC6Q5VYS8 1495 aaKnown RBP33.25■■■□□ 2.91
MAP1LC3B-206ENST00000564844 EHMT2Q96KQ7 1210 aa33■■■□□ 2.87
MAP1LC3B-206ENST00000564844 TRIM26Q12899 539 aaPredicted RBP32.9■■■□□ 2.86
MAP1LC3B-206ENST00000564844 DCAF1Q9Y4B6 1507 aa32.79■■■□□ 2.84
MAP1LC3B-206ENST00000564844 FAM9AQ8IZU1 332 aaPredicted RBP32.72■■■□□ 2.83
MAP1LC3B-206ENST00000564844 SCAF1Q9H7N4 1312 aaKnown RBP32.48■■■□□ 2.79
MAP1LC3B-206ENST00000564844 CCDC180Q9P1Z9 1646 aa32.45■■■□□ 2.78
MAP1LC3B-206ENST00000564844 TRIM41Q8WV44 630 aa32.31■■■□□ 2.76
MAP1LC3B-206ENST00000564844 ZEB1P37275 1124 aaPredicted RBP32.26■■■□□ 2.75
MAP1LC3B-206ENST00000564844 PELP1Q8IZL8 1130 aaKnown RBP32.13■■■□□ 2.73
MAP1LC3B-206ENST00000564844 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32■■■□□ 2.71
MAP1LC3B-206ENST00000564844 TTBK1Q5TCY1 1321 aaPredicted RBP31.97■■■□□ 2.71
MAP1LC3B-206ENST00000564844 NEUROD1Q13562 356 aa31.81■■■□□ 2.68
MAP1LC3B-206ENST00000564844 CCER1Q8TC90 406 aaPredicted RBP31.81■■■□□ 2.68
MAP1LC3B-206ENST00000564844 ACIN1Q9UKV3 1341 aaKnown RBP31.68■■■□□ 2.66
MAP1LC3B-206ENST00000564844 RSF1Q96T23 1441 aaPredicted RBP31.68■■■□□ 2.66
MAP1LC3B-206ENST00000564844 GTF3C3Q9Y5Q9 886 aa31.64■■■□□ 2.66
MAP1LC3B-206ENST00000564844 RB1CC1Q8TDY2 1594 aa31.51■■■□□ 2.64
MAP1LC3B-206ENST00000564844 SCRIBQ14160 1630 aa31.51■■■□□ 2.64
MAP1LC3B-206ENST00000564844 DIEXFQ68CQ4 756 aaKnown RBP31.51■■■□□ 2.64
MAP1LC3B-206ENST00000564844 ABCC9O60706 1549 aa31.48■■■□□ 2.63
MAP1LC3B-206ENST00000564844 YTHDC1Q96MU7 727 aaKnown RBP31.4■■■□□ 2.62
MAP1LC3B-206ENST00000564844 CENPBP07199 599 aaPredicted RBP31.31■■■□□ 2.6
MAP1LC3B-206ENST00000564844 CECR2Q9BXF3 1484 aa31.1■■■□□ 2.57
MAP1LC3B-206ENST00000564844 MROH2BQ7Z745 1585 aa30.88■■■□□ 2.53
MAP1LC3B-206ENST00000564844 ZNF316A6NFI3 1004 aaPredicted RBP30.87■■■□□ 2.53
MAP1LC3B-206ENST00000564844 UBTFP17480 764 aaKnown RBP30.85■■■□□ 2.53
MAP1LC3B-206ENST00000564844 RANGAP1P46060 587 aaPredicted RBP30.85■■■□□ 2.53
MAP1LC3B-206ENST00000564844 HNRNPUL2Q1KMD3 747 aaKnown RBP30.84■■■□□ 2.53
MAP1LC3B-206ENST00000564844 MIER1Q8N108 512 aa30.83■■■□□ 2.53
MAP1LC3B-206ENST00000564844 WIZO95785 1651 aa30.75■■■□□ 2.51
MAP1LC3B-206ENST00000564844 CEP162Q5TB80 1403 aa30.64■■■□□ 2.5
MAP1LC3B-206ENST00000564844 MYT1Q01538 1121 aa30.63■■■□□ 2.49
MAP1LC3B-206ENST00000564844 ABCC8Q09428 1581 aa30.63■■■□□ 2.49
MAP1LC3B-206ENST00000564844 CCDC88BA6NC98 1476 aa30.61■■■□□ 2.49
MAP1LC3B-206ENST00000564844 SOGA1O94964 1423 aa30.58■■■□□ 2.49
MAP1LC3B-206ENST00000564844 CSRNP3Q8WYN3 585 aa30.45■■■□□ 2.46
MAP1LC3B-206ENST00000564844 RUSC2Q8N2Y8 1516 aa30.44■■■□□ 2.46
MAP1LC3B-206ENST00000564844 WRNQ14191 1432 aaPredicted RBP eCLIP30.35■■■□□ 2.45
MAP1LC3B-206ENST00000564844 PABPN1Q86U42 306 aaKnown RBP eCLIP30.32■■■□□ 2.44
MAP1LC3B-206ENST00000564844 NACADO15069 1562 aa30.3■■■□□ 2.44
MAP1LC3B-206ENST00000564844 TNIKQ9UKE5 1360 aa30.29■■■□□ 2.44
MAP1LC3B-206ENST00000564844 APLP2Q06481 763 aa30.18■■■□□ 2.42
MAP1LC3B-206ENST00000564844 BAZ1AQ9NRL2 1556 aaPredicted RBP30.16■■■□□ 2.42
MAP1LC3B-206ENST00000564844 EIF4G1Q04637 1599 aaKnown RBP30.12■■■□□ 2.41
MAP1LC3B-206ENST00000564844 SUPT16HQ9Y5B9 1047 aaKnown RBP30.04■■■□□ 2.4
MAP1LC3B-206ENST00000564844 BCANQ96GW7 911 aa29.97■■■□□ 2.39
MAP1LC3B-206ENST00000564844 GOLGA3Q08378 1498 aa29.96■■■□□ 2.39
MAP1LC3B-206ENST00000564844 ITGAEP38570 1179 aa29.92■■■□□ 2.38
MAP1LC3B-206ENST00000564844 CLIP1P30622 1438 aa29.92■■■□□ 2.38
MAP1LC3B-206ENST00000564844 KCNH8Q96L42 1107 aa29.9■■■□□ 2.38
MAP1LC3B-206ENST00000564844 SMARCA2P51531 1590 aa29.88■■■□□ 2.37
MAP1LC3B-206ENST00000564844 TOP2AP11388 1531 aaKnown RBP29.87■■■□□ 2.37
MAP1LC3B-206ENST00000564844 TSHZ2Q9NRE2 1034 aa29.8■■■□□ 2.36
MAP1LC3B-206ENST00000564844 EEA1Q15075 1411 aa29.78■■■□□ 2.36
MAP1LC3B-206ENST00000564844 KANK4Q5T7N3 995 aaPredicted RBP29.69■■■□□ 2.34
MAP1LC3B-206ENST00000564844 SMARCA4P51532 1647 aa29.69■■■□□ 2.34
MAP1LC3B-206ENST00000564844 VPS8Q8N3P4 1428 aa29.68■■■□□ 2.34
MAP1LC3B-206ENST00000564844 CEP164Q9UPV0 1460 aa29.65■■■□□ 2.34
MAP1LC3B-206ENST00000564844 RAPGEF2Q9Y4G8 1499 aa29.65■■■□□ 2.34
MAP1LC3B-206ENST00000564844 DHX57Q6P158 1386 aaKnown RBP29.65■■■□□ 2.34
MAP1LC3B-206ENST00000564844 UNC13AQ9UPW8 1703 aa29.59■■■□□ 2.33
MAP1LC3B-206ENST00000564844 FKBP8Q14318 412 aa29.55■■■□□ 2.32
MAP1LC3B-206ENST00000564844 ANP32EQ9BTT0 268 aa29.55■■■□□ 2.32
MAP1LC3B-206ENST00000564844 HIRIP3Q9BW71 556 aaPredicted RBP29.54■■■□□ 2.32
MAP1LC3B-206ENST00000564844 SYNJ1O43426 1573 aa29.5■■■□□ 2.31
MAP1LC3B-206ENST00000564844 DDX10Q13206 875 aaKnown RBP29.49■■■□□ 2.31
MAP1LC3B-206ENST00000564844 KIF21BO75037 1637 aa29.43■■■□□ 2.3
MAP1LC3B-206ENST00000564844 TRIM52Q96A61 297 aa29.39■■■□□ 2.3
MAP1LC3B-206ENST00000564844 ATP1B4Q9UN42 357 aaPredicted RBP29.37■■■□□ 2.29
MAP1LC3B-206ENST00000564844 CLSPNQ9HAW4 1339 aa29.36■■■□□ 2.29
MAP1LC3B-206ENST00000564844 SIN3AQ96ST3 1273 aa29.33■■■□□ 2.29
MAP1LC3B-206ENST00000564844 BCL11AQ9H165 835 aa29.31■■■□□ 2.28
MAP1LC3B-206ENST00000564844 BICRAQ9NZM4 1560 aa29.3■■■□□ 2.28
MAP1LC3B-206ENST00000564844 NEFLP07196 543 aa29.18■■■□□ 2.26
MAP1LC3B-206ENST00000564844 RBM19Q9Y4C8 960 aaKnown RBP29.18■■■□□ 2.26
MAP1LC3B-206ENST00000564844 FAM50AQ14320 339 aaKnown RBP29.17■■■□□ 2.26
MAP1LC3B-206ENST00000564844 BAZ1BQ9UIG0 1483 aaKnown RBP29.16■■■□□ 2.26
MAP1LC3B-206ENST00000564844 P3H3Q8IVL6 736 aa29.15■■■□□ 2.26
MAP1LC3B-206ENST00000564844 ARAP1Q96P48 1450 aa29.14■■■□□ 2.26
MAP1LC3B-206ENST00000564844 CCNB3Q8WWL7 1395 aa29.13■■■□□ 2.25
MAP1LC3B-206ENST00000564844 IRX6P78412 446 aaPredicted RBP29.13■■■□□ 2.25
MAP1LC3B-206ENST00000564844 RAB3GAP2Q9H2M9 1393 aa29.12■■■□□ 2.25
MAP1LC3B-206ENST00000564844 RRBP1Q9P2E9 1410 aaKnown RBP28.97■■■□□ 2.23
MAP1LC3B-206ENST00000564844 ANP32CO43423 234 aa28.95■■■□□ 2.22
MAP1LC3B-206ENST00000564844 PRKCSHP14314 528 aaPredicted RBP28.92■■■□□ 2.22
MAP1LC3B-206ENST00000564844 WDR97A6NE52 1622 aa28.92■■■□□ 2.22
MAP1LC3B-206ENST00000564844 ATAD2BQ9ULI0 1458 aa28.91■■■□□ 2.22
MAP1LC3B-206ENST00000564844 PPP1R15AO75807 674 aaPredicted RBP28.9■■■□□ 2.22
MAP1LC3B-206ENST00000564844 MSH5O43196 834 aa28.9■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms